Difference between revisions of "Documentation/Nightly/ModuleExtensionListing"

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Tag: 2017 source edit
 
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** [[#Modules_by_category_Utilities_BRAINS|BRAINS]]
 
** [[#Modules_by_category_Utilities_BRAINS|BRAINS]]
 
* [[#Modules_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
 
* [[#Modules_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
 +
* [[#Modules_by_category_Virtual_Reality|Virtual Reality]]
 
* [[#Modules_by_category_Web_System_Tools|Web System Tools]]
 
* [[#Modules_by_category_Web_System_Tools|Web System Tools]]
 
* [[#Modules_by_category_Wizards|Wizards]]
 
* [[#Modules_by_category_Wizards|Wizards]]
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== Astronomy ==
 
== Astronomy ==
 
* [[Documentation/Nightly/Modules/AstroVolume|AstroVolume]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Modules/AstroVolume|AstroVolume]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroReproject|AstroReproject]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroStatistics|AstroStatistics]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroMasking|AstroMasking]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
* [[Documentation/Nightly/Extensions/SlicerAstro|AstroSampleData]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
+
* [[Documentation/Nightly/Modules/AstroSampleData|AstroSampleData]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroProfiles|AstroProfiles]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroMomentMaps|AstroMomentMaps]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroPVSlice|AstroPVSlice]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroPVDiagram|AstroPVDiagram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Modules/AstroModeling|AstroModeling]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Modules/AstroModeling|AstroModeling]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
* [[Documentation/Nightly/Extensions/SlicerAstro|AstroWelcome]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
+
* [[Documentation/Nightly/Modules/AstroWelcome|AstroWelcome]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
* [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstroDataProbe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
+
* [[Documentation/Nightly/Modules/SlicerAstroDataProbe|SlicerAstroDataProbe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
<span id='Modules_by_category_Cardiac'></span>
 
<span id='Modules_by_category_Cardiac'></span>
 +
 
== Cardiac ==
 
== Cardiac ==
 
* [[Documentation/Nightly/Extensions/SlicerHeart|Philips4dUsDicomPatcher]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerHeart|Philips4dUsDicomPatcher]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small>
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<span id='Modules_by_category_Toolkit_Registration'></span>
 
<span id='Modules_by_category_Toolkit_Registration'></span>
 
==== Registration ====
 
==== Registration ====
 +
*[[:Category:Documentation/Nightly/Modules/Registration|Introduction to Registration]] <small>(by Dominik Meier)</small>
 
* [http://www.chestimagingplatform.org RegisterLungAtlas]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org RegisterLungAtlas]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org RegisterLabelMaps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org RegisterLabelMaps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org RegisterCT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org RegisterCT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
<span id='Modules_by_category_Toolkit_Segmentation'></span>
 
<span id='Modules_by_category_Toolkit_Segmentation'></span>
 +
 
==== Segmentation ====
 
==== Segmentation ====
 
* [http://www.chestimagingplatform.org GenerateOtsuLungCast]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org GenerateOtsuLungCast]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
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<span id='Modules_by_category_Developer_Tools_Editor_Extensions'></span>
 
<span id='Modules_by_category_Developer_Tools_Editor_Extensions'></span>
 
=== Editor Extensions ===
 
=== Editor Extensions ===
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut FastGrowCutEffect]    <small>(scripted, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut FastGrowCutEffect] extension)</small>
+
* [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]]    <small>(scripted, bundled in [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter CarreraSliceEffect]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter CarreraSlice] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSliceEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGAEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGAEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
 
* [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumorSegmentationEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small>
 
* [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumorSegmentationEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small>
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<span id='Modules_by_category_Examples'></span>
 
<span id='Modules_by_category_Examples'></span>
 
== Examples ==
 
== Examples ==
* [[Documentation/Nightly/Modules/FastGrowCut|FastGrowCut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut FastGrowCutEffect] extension)</small>
+
* [[Documentation/Nightly/Modules/FastGrowCut|FastGrowCut]]    <small>(loadable, bundled in [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGA]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGA]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter FastGrowCutSegmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter CarreraSlice] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|FastGrowCutSegmenter]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerPathology|ShortCutCore]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerPathology|ShortCutCore]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
 
* [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutInteractiveSegmenter]    <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutSegment] extension)</small>
 
* [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutInteractiveSegmenter]    <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutSegment] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter CarreraSlice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter CarreraSlice] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
 
<span id='Modules_by_category_Exporter'></span>
 
<span id='Modules_by_category_Exporter'></span>
 
== Exporter ==
 
== Exporter ==
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* [[Documentation/Nightly/Modules/CheckerBoardFilter|CheckerBoardFilter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/CheckerBoardFilter|CheckerBoardFilter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
* [[Documentation/Nightly/Modules/ExtractSkeleton|ExtractSkeleton]]    <small>(cli, built-in)</small>
+
* [https://slicer.readthedocs.io/en/latest/user_guide/modules/extractskeleton.html ExtractSkeleton]    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Modules/SimpleFilters|SimpleFilters]]    <small>(scripted, built-in)</small>
+
* [https://slicer.readthedocs.io/en/latest/user_guide/modules/simplefilters.html SimpleFilters]    <small>(scripted, built-in)</small>
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|ThresholdScalarVolume]]    <small>(cli, built-in)</small>
+
* [https://slicer.readthedocs.io/en/latest/user_guide/modules/thresholdscalarvolume.html ThresholdScalarVolume]    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Modules/HistogramMatching|HistogramMatching]]    <small>(cli, built-in)</small>
+
* [https://slicer.readthedocs.io/en/latest/user_guide/modules/histogrammatching.html HistogramMatching]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Filtering_Arithmetic'></span>
 
<span id='Modules_by_category_Filtering_Arithmetic'></span>
 
=== Arithmetic ===
 
=== Arithmetic ===
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* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|GrayscaleGrindPeakImageFilter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|GrayscaleGrindPeakImageFilter]]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_IGT'></span>
 
<span id='Modules_by_category_IGT'></span>
 +
 
== IGT ==
 
== IGT ==
 
* [[Documentation/Nightly/Extensions/SlicerIGT|Viewpoint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|Viewpoint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
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* [[Documentation/Nightly/Extensions/SlicerIGT|CreateModels]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|CreateModels]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]] extension)</small>
 
* [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]] extension)</small>
* [[Documentation/Nightly/Modules/TrackerStabilizer|TrackerStabilizer]]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer TrackerStabilizer] extension)</small>
+
* [[Documentation/Nightly/Modules/TrackerStabilizer|TrackerStabilizer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/TrackerStabilizer|TrackerStabilizer]] extension)</small>
 
* [[Documentation/Nightly/Modules/PathExplorer|PathExplorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Modules/PathExplorer|PathExplorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|UltrasoundSnapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|UltrasoundSnapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
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* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|QuantitativeIndicesCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
 
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|QuantitativeIndicesCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
 
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandardUptakeValueComputation]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandardUptakeValueComputation]]    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactorCalculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactorCalculator]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETDICOM|PETDICOMExtension]] extension)</small>
 
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|SpinalCurvatureMeasurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|SpinalCurvatureMeasurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|QuantitativeIndicesTool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
 
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|QuantitativeIndicesTool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
 
* SegmentStatistics    <small>(scripted, built-in)</small>
 
* SegmentStatistics    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/LabelStatistics|LabelStatistics]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/LabelStatistics|LabelStatistics]]    <small>(scripted, built-in)</small>
* [[Documentation/Nightly/Modules/MeshStatistics|MeshStatistics]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics MeshStatisticsExtension] extension)</small>
+
* [[Documentation/Nightly/Modules/MeshStatistics|MeshStatistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MeshStatistics|MeshStatisticsExtension]] extension)</small>
 
* [[Documentation/Nightly/Modules/DWModeling|DWModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
 
* [[Documentation/Nightly/Modules/DWModeling|DWModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
 
* BRAINSLabelStats    <small>(cli, built-in)</small>
 
* BRAINSLabelStats    <small>(cli, built-in)</small>
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* [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]] extension)</small>
 
* [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]] extension)</small>
 
* [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small>
 
* [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small>
* [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstroDataProbe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
+
* [[Documentation/Nightly/Modules/SlicerAstroDataProbe|SlicerAstroDataProbe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Modules/AnglePlanes|AnglePlanes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
 
* [[Documentation/Nightly/Modules/AnglePlanes|AnglePlanes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
 
* [[Documentation/Nightly/Modules/dPetBrainQuantification|dPetBrainQuantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis PetSpectAnalysis] extension)</small>
 
* [[Documentation/Nightly/Modules/dPetBrainQuantification|dPetBrainQuantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis PetSpectAnalysis] extension)</small>
* [[Documentation/Nightly/Modules/PickAndPaint|PickAndPaint]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint PickAndPaintExtension] extension)</small>
+
* [[Documentation/Nightly/Modules/PickAndPaint|PickAndPaint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PickAndPaint|PickAndPaintExtension]] extension)</small>
 
* [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] extension)</small>
 
* [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] extension)</small>
 
* [[Documentation/Nightly/Modules/DiceComputation|DiceComputation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|DiceComputation]] extension)</small>
 
* [[Documentation/Nightly/Modules/DiceComputation|DiceComputation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|DiceComputation]] extension)</small>
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* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|IntensityDifferenceMetric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|ChangeTracker]] extension)</small>
 
* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|IntensityDifferenceMetric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|ChangeTracker]] extension)</small>
 
<span id='Modules_by_category_Radiology'></span>
 
<span id='Modules_by_category_Radiology'></span>
 +
 
== Radiology ==
 
== Radiology ==
 
* [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
Line 583: Line 596:
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [[Documentation/Nightly/Extensions/SliceTracker|VolumeClipToLabel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SliceTracker|VolumeClipToLabel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation AirwaySegmentationCLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation AirwaySegmentation] extension)</small>
+
* [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentationCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small>
 
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScarSegmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScarSegmenter]] extension)</small>
 
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScarSegmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScarSegmenter]] extension)</small>
 
* [[Documentation/Nightly/Modules/SegmentEditor|SegmentEditor]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/SegmentEditor|SegmentEditor]]    <small>(scripted, built-in)</small>
* [[Documentation/Nightly/Modules/AirwaySegmentation|AirwaySegmentation]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation AirwaySegmentation] extension)</small>
+
* [[Documentation/Nightly/Modules/AirwaySegmentation|AirwaySegmentation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small>
 
* [[Documentation/Nightly/Modules/SkullStripper|SkullStripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|SkullStripper]] extension)</small>
 
* [[Documentation/Nightly/Modules/SkullStripper|SkullStripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|SkullStripper]] extension)</small>
 
* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorFastMarching]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small>
 
* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorFastMarching]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small>
Line 613: Line 626:
 
<span id='Modules_by_category_Slicelets'></span>
 
<span id='Modules_by_category_Slicelets'></span>
 
== Slicelets ==
 
== Slicelets ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/FilmDosimetry FilmDosimetryAnalysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/FilmDosimetry FilmDosimetryAnalysis] extension)</small>
+
* [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry GelDosimetryAnalysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry GelDosimetryAnalysis] extension)</small>
+
* [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry GelDosimetryAnalysisAlgo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry GelDosimetryAnalysis] extension)</small>
+
* [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysisAlgo]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small>
 
<span id='Modules_by_category_SlicerProstate'></span>
 
<span id='Modules_by_category_SlicerProstate'></span>
 
== SlicerProstate ==
 
== SlicerProstate ==
Line 721: Line 734:
 
* [http://slicer.vmtk.org/ LevelSetSegmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ LevelSetSegmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ VesselnessFiltering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ VesselnessFiltering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 +
<span id='Modules_by_category_Virtual_Reality'></span>
 +
== Virtual Reality ==
 +
* [[Documentation/Nightly/Modules/VirtualReality|VirtualReality]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerVirtualReality|SlicerVirtualReality]] extension)</small>
 
<span id='Modules_by_category_Web_System_Tools'></span>
 
<span id='Modules_by_category_Web_System_Tools'></span>
 
== Web System Tools ==
 
== Web System Tools ==
Line 731: Line 747:
 
== XNATSlicer ==
 
== XNATSlicer ==
 
* [[Documentation/Nightly/Extensions/XNATSlicer|XnatSlicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
* [[Documentation/Nightly/Extensions/XNATSlicer|XnatSlicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 +
 
= Modules by name =
 
= Modules by name =
 
367 modules:
 
367 modules:
Line 737: Line 754:
 
* [[Documentation/Nightly/Modules/AddScalarVolumes|AddScalarVolumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/AddScalarVolumes|AddScalarVolumes]]    <small>(cli, built-in)</small>
 
* [http://www.chestimagingplatform.org AirwayInspector]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org AirwayInspector]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
* [[Documentation/Nightly/Modules/AirwaySegmentation|AirwaySegmentation]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation AirwaySegmentation] extension)</small>
+
* [[Documentation/Nightly/Modules/AirwaySegmentation|AirwaySegmentation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation AirwaySegmentationCLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation AirwaySegmentation] extension)</small>
+
* [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentationCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small>
 
* [[Documentation/Nightly/Modules/AnglePlanes|AnglePlanes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
 
* [[Documentation/Nightly/Modules/AnglePlanes|AnglePlanes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
 
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Extensions/CMFreg|ApplyMatrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Extensions/CMFreg|ApplyMatrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroMasking|AstroMasking]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Modules/AstroModeling|AstroModeling]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Modules/AstroModeling|AstroModeling]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroMomentMaps|AstroMomentMaps]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroProfiles|AstroProfiles]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroPVDiagram|AstroPVDiagram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroPVSlice|AstroPVSlice]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroReproject|AstroReproject]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerAstro|AstroSampleData]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerAstro|AstroSampleData]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroStatistics|AstroStatistics]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Modules/AstroVolume|AstroVolume]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Modules/AstroVolume|AstroVolume]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerAstro|AstroWelcome]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerAstro|AstroWelcome]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
Line 761: Line 785:
 
* BRAINSTransformConvert    <small>(cli, built-in)</small>
 
* BRAINSTransformConvert    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|BreachWarning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|BreachWarning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter CarreraSlice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter CarreraSlice] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
 
* [[Documentation/Nightly/Modules/CastScalarVolume|CastScalarVolume]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/CastScalarVolume|CastScalarVolume]]    <small>(cli, built-in)</small>
 
* [http://slicer.vmtk.org/ CenterlineComputation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ CenterlineComputation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
Line 856: Line 880:
 
* [http://www.chestimagingplatform.org ExtractParticlesFromChestRegionChestType]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org ExtractParticlesFromChestRegionChestType]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [[Documentation/Nightly/Modules/ExtractSkeleton|ExtractSkeleton]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ExtractSkeleton|ExtractSkeleton]]    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Modules/FastGrowCut|FastGrowCut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut FastGrowCutEffect] extension)</small>
+
* [[Documentation/Nightly/Modules/FastGrowCut|FastGrowCut]]    <small>(loadable, bundled in [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter FastGrowCutSegmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter CarreraSlice] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|FastGrowCutSegmenter]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
 
* [[Documentation/Nightly/Modules/FiberBundleLabelSelect|FiberBundleLabelSelect]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 
* [[Documentation/Nightly/Modules/FiberBundleLabelSelect|FiberBundleLabelSelect]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|FiberBundleToLabelMap]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|FiberBundleToLabelMap]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
Line 864: Line 888:
 
* [[Documentation/Nightly/Extensions/SlicerIGT|FiducialRegistrationWizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|FiducialRegistrationWizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|FiducialsToModelRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|FiducialsToModelRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/FilmDosimetry FilmDosimetryAnalysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/FilmDosimetry FilmDosimetryAnalysis] extension)</small>
+
* [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]] extension)</small>
 
* [http://www.chestimagingplatform.org FilterAirwayParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org FilterAirwayParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org FilterConnectedComponents]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org FilterConnectedComponents]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
Line 872: Line 896:
 
* [http://www.chestimagingplatform.org FitLobeSurfaceModelsToParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org FitLobeSurfaceModelsToParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|GaussianBlurImageFilter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|GaussianBlurImageFilter]]    <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry GelDosimetryAnalysis]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry GelDosimetryAnalysis] extension)</small>
+
* [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry GelDosimetryAnalysisAlgo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry GelDosimetryAnalysis] extension)</small>
+
* [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysisAlgo]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small>
 
* [http://www.chestimagingplatform.org GenerateAtlasConvexHull]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org GenerateAtlasConvexHull]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org GenerateBinaryThinning3D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org GenerateBinaryThinning3D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
Line 913: Line 937:
 
* [[Documentation/Nightly/Extensions/DCMQI|itkimage2paramap]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 
* [[Documentation/Nightly/Extensions/DCMQI|itkimage2paramap]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 
* [[Documentation/Nightly/Extensions/DCMQI|itkimage2segimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 
* [[Documentation/Nightly/Extensions/DCMQI|itkimage2segimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter CarreraSlice] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|KUtil]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
 
* [[Documentation/Nightly/Modules/LabelAddition|LabelAddition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/LabelAddition|LabelAddition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/LabelExtraction|LabelExtraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/LabelExtraction|LabelExtraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
Line 935: Line 959:
 
* [[Documentation/Nightly/Modules/MergeModels|MergeModels]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/MergeModels|MergeModels]]    <small>(cli, built-in)</small>
 
* [http://www.chestimagingplatform.org MergeParticleDataSets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [http://www.chestimagingplatform.org MergeParticleDataSets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
* [[Documentation/Nightly/Modules/MeshStatistics|MeshStatistics]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics MeshStatisticsExtension] extension)</small>
+
* [[Documentation/Nightly/Modules/MeshStatistics|MeshStatistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MeshStatistics|MeshStatisticsExtension]] extension)</small>
 
* [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]] extension)</small>
 
* [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|MetafileImporter]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|MetafileImporter]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
Line 969: Line 993:
 
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small>
 
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerHeart|Philips4dUsDicomPatcher]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerHeart|Philips4dUsDicomPatcher]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small>
* [[Documentation/Nightly/Modules/PickAndPaint|PickAndPaint]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint PickAndPaintExtension] extension)</small>
+
* [[Documentation/Nightly/Modules/PickAndPaint|PickAndPaint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PickAndPaint|PickAndPaintExtension]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|PivotCalibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|PivotCalibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Modules/PkModeling|PkModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|PkModeling]] extension)</small>
 
* [[Documentation/Nightly/Modules/PkModeling|PkModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|PkModeling]] extension)</small>
Line 1,042: Line 1,066:
 
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|SimpleRegionGrowingSegmentation]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|SimpleRegionGrowingSegmentation]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/SkullStripper|SkullStripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|SkullStripper]] extension)</small>
 
* [[Documentation/Nightly/Modules/SkullStripper|SkullStripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|SkullStripper]] extension)</small>
* [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstroDataProbe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
+
* [[Documentation/Nightly/Modules/SlicerAstroDataProbe|SlicerAstroDataProbe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
 
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|SlicerToKiwiExporter]] extension)</small>
 
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|SlicerToKiwiExporter]] extension)</small>
Line 1,056: Line 1,080:
 
* [[Documentation/Nightly/Modules/SurfaceRegistration|SurfaceRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/SurfaceRegistration|SurfaceRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/SurfaceToolbox|SurfaceToolbox]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/SurfaceToolbox|SurfaceToolbox]]    <small>(scripted, built-in)</small>
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactorCalculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactorCalculator]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETDICOM|PETDICOMExtension]] extension)</small>
 
* [[Documentation/Nightly/Modules/SwissSkullStripper|SwissSkullStripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|SwissSkullStripper]] extension)</small>
 
* [[Documentation/Nightly/Modules/SwissSkullStripper|SwissSkullStripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|SwissSkullStripper]] extension)</small>
 
* [[Documentation/Nightly/Extensions/MarginCalculator|SyntheticRTDose]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small>
 
* [[Documentation/Nightly/Extensions/MarginCalculator|SyntheticRTDose]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small>
Line 1,067: Line 1,091:
 
* [[Documentation/Nightly/Extensions/DCMQI|tid1500reader]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 
* [[Documentation/Nightly/Extensions/DCMQI|tid1500reader]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 
* [[Documentation/Nightly/Extensions/DCMQI|tid1500writer]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 
* [[Documentation/Nightly/Extensions/DCMQI|tid1500writer]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
* [[Documentation/Nightly/Modules/TrackerStabilizer|TrackerStabilizer]]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer TrackerStabilizer] extension)</small>
+
* [[Documentation/Nightly/Modules/TrackerStabilizer|TrackerStabilizer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/TrackerStabilizer|TrackerStabilizer]] extension)</small>
 
* [[Documentation/Nightly/Modules/TractographyDisplay|TractographyDisplay]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 
* [[Documentation/Nightly/Modules/TractographyDisplay|TractographyDisplay]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 
* [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|TractographyInteractiveSeeding]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 
* [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|TractographyInteractiveSeeding]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
Line 1,085: Line 1,109:
 
* [[Documentation/Nightly/Modules/ViewControllers|ViewControllers]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/ViewControllers|ViewControllers]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|Viewpoint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|Viewpoint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/VirtualReality|VirtualReality]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerVirtualReality|SlicerVirtualReality]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SliceTracker|VolumeClipToLabel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SliceTracker|VolumeClipToLabel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
 
* [[Documentation/Nightly/Extensions/VolumeClip|VolumeClipWithModel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|VolumeClip]] extension)</small>
 
* [[Documentation/Nightly/Extensions/VolumeClip|VolumeClipWithModel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|VolumeClip]] extension)</small>

Latest revision as of 18:02, 13 November 2022

Home < Documentation < Nightly < ModuleExtensionListing


Modules by category

46 categories:

Astronomy

Cardiac

Cardiac MRI Toolkit

Chest Imaging Platform

Toolkit

Particles

Processing

Quantification

Registration

Segmentation

Utils

CIP

Converters

Developer Tools

DICOM Plugins

  • DICOMParametricMapPlugin
  • DicomUltrasoundPlugin
  • DICOMSegmentationPlugin
  • DICOMSlicerDataBundlePlugin
  • DICOMTID1500Plugin
  • DICOMPETSUVPlugin
  • DICOMScalarVolumePlugin
  • DICOMDiffusionVolumePlugin
  • DICOMLongitudinalPETCTPlugin
  • DicomSroImportPlugin
  • DICOMRWVMPlugin
  • DicomRtImportExportPlugin
  • MultiVolumeImporterPlugin

Editor Extensions

Matlab

Segment Editor Extensions

Utils

Diffusion

Diffusion Data Conversion

  • DWIConvert (cli, built-in)

Diffusion Tensor Images

Diffusion Weighted Images

  • BRAINSDWICleanup (cli, built-in)

Import and Export

Process

Quantify

Tractography

Region-based

Utilities

Editor Effects

EditorEffect

Endoscopy

Examples

Exporter

Filter

  • IslandRemoval (cli, built-in)

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Converters

Legacy

Converters

Filtering

Registration

Work in Progress

Diffusion Tensor

Test
  • DiffusionTensorTest (cli, built-in)

Libraries

Machine Learning

Margin Calculator

Mesh Generation

MeshGeneration

Microscopy

MultiVolume Support

Pathology

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiology

Radiotherapy

Registration

CMF Registration

Voxelbase Registration

Label Registration

Specialized

Segmentation

Specialized

Sequences

Slicelets

SlicerProstate

Surface Models

TestCases

  • SEGExporterSelfTest

Testing

  • CLI4Test
  • ThresholdThreadingTest
  • ScoliosisMonitoring (scripted, bundled in Scoliosis extension)
  • SlicerMRBSaveRestoreCheckPathsTest
  • CLIROITest (cli, built-in)
  • PerformanceTests
  • SlicerMRBMultipleSaveRestoreTest
  • SlicerMRBTest
  • SEGExporterSelfTest
  • SelfTests
  • SlicerMRBMultipleSaveRestoreLoopTest

IGT Tests

  • BreachWarningSelfTest
  • WatchdogSelfTest

SlicerRT Tests

TestCases

  • AtlasTests
  • AddStorableDataAfterSceneViewTest
  • test_tractography_display
  • SlicerTransformInteractionTest1
  • RSNAQuantTutorial
  • NeurosurgicalPlanningTutorialMarkupsSelfTest
  • ChangeTrackerSelfTest
  • FiducialLayoutSwitchBug1914
  • GraphCutSegmentSelfTest
  • SlicerBoundsTest
  • UtilTest
  • Charting (scripted, built-in)
  • CardiacAgatstonMeasures (scripted, bundled in CardiacAgatstonMeasures extension)
  • fiber_visibility_crash2438
  • RSNAVisTutorial
  • JRC2013Vis
  • AddManyMarkupsFiducialTest
  • CropVolumeSelfTest
  • SliceLinkLogic (scripted, built-in)
  • VolumeRenderingSceneClose (scripted, built-in)
  • slicerCloseCrashBug2590
  • CLIEventTest
  • NsgPlanTracto (scripted, bundled in SlicerDMRI extension)
  • MarkupsWidgetsSelfTest
  • TablesSelfTest
  • SlicerOrientationSelectorTest
  • MarkupsInViewsSelfTest
  • TwoCLIsInParallelTest
  • SubjectHierarchyCorePluginsSelfTest
  • SubjectHierarchyGenericSelfTest
  • ScenePerformance (scripted, built-in)
  • MarkupsInCompareViewersSelfTest
  • sceneImport2428
  • RSNA2012ProstateDemo
  • DTINotReproducibleIssue3977
  • TwoCLIsInARowTest
  • ColorsScalarBarSelfTest
  • BRAINSFitRigidRegistrationCrashIssue4139
  • Slicer4Minute (scripted, built-in)
  • ViewControllersSliceInterpolationBug1926

Ultrasound

Uncategorized

Utilities

  • ScreenCapture (scripted, built-in)
  • DataStore (loadable, built-in)
  • DICOMPatcher (scripted, built-in)
  • BRAINSStripRotation (cli, built-in)
  • EMSegmentTransformToNewFormat (cli, built-in)

BRAINS

  • BRAINSTransformConvert (cli, built-in)

Vascular Modeling Toolkit

Virtual Reality

Web System Tools

Wizards

XNATSlicer

Modules by name

367 modules: