Documentation/Nightly/Extensions/MeshToLabelMap

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For the stable Slicer documentation, visit the 4.6 page.

Introduction and Acknowledgements

Author: Francois Budin (UNC)
Contributors: Ipek Oguz (University of Iowa)
Contact: Francois Budin,
Website: https://github.com/NIRALUser/MeshToLabelMap
License: Apache License, Version 2.0

Extension Description

Quick Tour of Features and Use

This extension computes a label map from a 3D model.

A list panels in the interface, their features, what they mean, and how to use them. A list panels in the interface, their features, what they mean, and how to use them.

  • I/O parameters:
    • Input Mesh [--input_mesh] [--m]: Input mesh to convert into a label map
    • Output Label Map [--output_labelmap] [-l]: Output label map
  • Output label map information:
    • Reference Image [--reference_volume] [-R]: Reference image: used to set the output image size, orientation, spacing and dimensions
    • Pixel Value [--pixel_value] : Label map pixel value (needs to be an integer between 1 and 255 included) Default value: 1
    • Spacing [--spacing] [-s]: Output label map volume spacing (in mm) Default value: -1,-1,-1
    • Boundary Extension [--boundary_extension] [-e]: Extension (in number of voxel) of the boundary box computed from the input mesh Default value: 1,1,1
  • Post-processing parameters:
    • Apply smoothing [--median] : Select if a median image filter smoothing is applied to the output label map Default value: 0
    • Smoothing kernel radius [--median_radius] : Radius (in number of voxel) of the kernel of the median smoothing Default value: -1,-1,-1
  • Advanced parameters:
    • Verbose [--verbose] : Print information while tool in running Default value: 0
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Use Cases

Similar Extensions

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Information for Developers

More information as well as the source code can found on the project webpage: https://github.com/NIRALUser/MeshToLabelMap