Documentation/Nightly/Modules/Growing

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Growing

Growing

User Interface
Baseline CBCT Scan - Input Scan
Follow up CBCT Scan - Input Scan
Baseline Segmentation Mask - Input Seg
Followup Segmentation Mask - Input Seg
Baseline Input Scan + Followup Input Scan
Baseline and Followup CBCT Scans - Baseline and Followup CBCT Scans Registered - Baseline Input Scan + Output Scan

General Information

Module Type & Category

Type: Extension

Category: CBCT Scan Registration


Authors, Collaborators & Contact

Author: Vinicius Boen

Contributors: Francois Budin (NIRAL, University of North Carolina), Martin Styner (NIRAL, University Of North Carolina), Beatriz Paniagua (NIRAL, University Of North Carolina), Lucia Cevidanes (University of Michigan - School of Dentistry)

Contact: vboen@umich.edu

Module Description

  • Input Parameters:
    • Baseline Scan (fixed) [-f --fixedVolume] : The fixed scan image for registration.
    • Follow up Scan (moving) [-m --movingVolume] : The moving scan image for registration.
    • Baseline Segmentation (fixed) [--fixedBinaryVolume] : The fixed one label segmentation image for registration used to specify the region of interest.
    • Follow up Segmentation (moving) [--movingBinaryVolume] : The moving one label segmentation image for registration used to specify the region of interest.
  • Voxel Based Registration Options:
    • Rigid + Scale (7DOF) [--useScaleVersor3D] : Perform a ScaleVersor3D registration as part of the sequential registration steps.
    • Rigid + Skew + Scale (10DOF) [--useScaleSkewVersor3D] : Perform a ScaleSkewVersor3D registration as part of the sequential registration steps.
    • Affine (12DOF) [--useAffine] : Perform an Affine registration as part of the sequential registration steps.
  • Output Registration Matrix:
    • Registration Matrix [-t --transformPath] : File name for the rigid component of the estimated registration matrix. Can be used to rigidly register the moving image to the fixed image.
  • Apply Registration Matrix:
    • Input Segmentatiton to be Registered [--segmentation] : Input segmentation image to be modified with the registration matrix.
    • Output Registered Scan [--segmentationOut] : Output segmentation image. This segmentaiton image is the 'Input Segmentation to be Registered' with the registration matrix already applied.
    • Output Registered Scan [--outputVolume] : Output image for registration. This image is the Follow up Scan with the registration matrix already applied.
User Interface