Difference between revisions of "Documentation/Nightly/ModuleExtensionListing"

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Tag: 2017 source edit
 
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<noinclude>{{:Documentation/Nightly/ModuleExtensionListing/TOC}}</noinclude>
 
<noinclude>{{:Documentation/Nightly/ModuleExtensionListing/TOC}}</noinclude>
 
= Modules by category =
 
= Modules by category =
−
36 categories:
+
46 categories:
−
* [[#Modules_by_category_BRAINS|BRAINS]]
+
* [[#Modules_by_category_Astronomy|Astronomy]]
−
** [[#Modules_by_category_BRAINS_LabelStatistics|Label Statistics]]
+
* [[#Modules_by_category_Cardiac|Cardiac]]
 
* [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]]
 
* [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]]
−
* [[#Modules_by_category_CMF_Registration|CMF Registration]]
+
* [[#Modules_by_category_Chest_Imaging_Platform|Chest Imaging Platform]]
−
** [[#Modules_by_category_CMF_Registration_Voxelbase_Registration|Voxelbase Registration]]
+
** [[#Modules_by_category_Chest_Imaging_Platform_Toolkit|Toolkit]]
 +
*** [[#Modules_by_category_Toolkit_Particles|Particles]]
 +
*** [[#Modules_by_category_Toolkit_Processing|Processing]]
 +
*** [[#Modules_by_category_Toolkit_Quantification|Quantification]]
 +
*** [[#Modules_by_category_Toolkit_Registration|Registration]]
 +
*** [[#Modules_by_category_Toolkit_Segmentation|Segmentation]]
 +
*** [[#Modules_by_category_Toolkit_Utils|Utils]]
 +
* [[#Modules_by_category_CIP|CIP]]
 
* [[#Modules_by_category_Converters|Converters]]
 
* [[#Modules_by_category_Converters|Converters]]
 
* [[#Modules_by_category_Developer_Tools|Developer Tools]]
 
* [[#Modules_by_category_Developer_Tools|Developer Tools]]
Line 13: Line 20:
 
** [[#Modules_by_category_Developer_Tools_Editor_Extensions|Editor Extensions]]
 
** [[#Modules_by_category_Developer_Tools_Editor_Extensions|Editor Extensions]]
 
** [[#Modules_by_category_Developer_Tools_Matlab|Matlab]]
 
** [[#Modules_by_category_Developer_Tools_Matlab|Matlab]]
 +
** [[#Modules_by_category_Developer_Tools_Segment_Editor_Extensions|Segment Editor Extensions]]
 +
** [[#Modules_by_category_Developer_Tools_Utils|Utils]]
 
* [[#Modules_by_category_Diffusion|Diffusion]]
 
* [[#Modules_by_category_Diffusion|Diffusion]]
 
** [[#Modules_by_category_Diffusion_Diffusion_Data_Conversion|Diffusion Data Conversion]]
 
** [[#Modules_by_category_Diffusion_Diffusion_Data_Conversion|Diffusion Data Conversion]]
 
** [[#Modules_by_category_Diffusion_Diffusion_Tensor_Images|Diffusion Tensor Images]]
 
** [[#Modules_by_category_Diffusion_Diffusion_Tensor_Images|Diffusion Tensor Images]]
 
** [[#Modules_by_category_Diffusion_Diffusion_Weighted_Images|Diffusion Weighted Images]]
 
** [[#Modules_by_category_Diffusion_Diffusion_Weighted_Images|Diffusion Weighted Images]]
−
** [[#Modules_by_category_Diffusion_FiberAnalysis|Fiber Analysis]]
+
** [[#Modules_by_category_Diffusion_Import_and_Export|Import and Export]]
 +
** [[#Modules_by_category_Diffusion_Process|Process]]
 +
** [[#Modules_by_category_Diffusion_Quantify|Quantify]]
 
** [[#Modules_by_category_Diffusion_Tractography|Tractography]]
 
** [[#Modules_by_category_Diffusion_Tractography|Tractography]]
 +
*** [[#Modules_by_category_Tractography_Region-based|Region-based]]
 +
** [[#Modules_by_category_Diffusion_Utilities|Utilities]]
 
* [[#Modules_by_category_Editor_Effects|Editor Effects]]
 
* [[#Modules_by_category_Editor_Effects|Editor Effects]]
−
* [[#Modules_by_category_EditorEffect|Editor Effect]]
+
* [[#Modules_by_category_EditorEffect|EditorEffect]]
 
* [[#Modules_by_category_Endoscopy|Endoscopy]]
 
* [[#Modules_by_category_Endoscopy|Endoscopy]]
 
* [[#Modules_by_category_Examples|Examples]]
 
* [[#Modules_by_category_Examples|Examples]]
 
* [[#Modules_by_category_Exporter|Exporter]]
 
* [[#Modules_by_category_Exporter|Exporter]]
 +
* [[#Modules_by_category_Filter|Filter]]
 
* [[#Modules_by_category_Filtering|Filtering]]
 
* [[#Modules_by_category_Filtering|Filtering]]
 
** [[#Modules_by_category_Filtering_Arithmetic|Arithmetic]]
 
** [[#Modules_by_category_Filtering_Arithmetic|Arithmetic]]
Line 30: Line 44:
 
* [[#Modules_by_category_IGT|IGT]]
 
* [[#Modules_by_category_IGT|IGT]]
 
* [[#Modules_by_category_Informatics|Informatics]]
 
* [[#Modules_by_category_Informatics|Informatics]]
 +
** [[#Modules_by_category_Informatics_Converters|Converters]]
 
* [[#Modules_by_category_Legacy|Legacy]]
 
* [[#Modules_by_category_Legacy|Legacy]]
 
** [[#Modules_by_category_Legacy_Converters|Converters]]
 
** [[#Modules_by_category_Legacy_Converters|Converters]]
−
** [[#Modules_by_category_Legacy_Diffusion|Diffusion]]
 
−
*** [[#Modules_by_category_Diffusion_Denoising|Denoising]]
 
−
*** [[#Modules_by_category_Diffusion_Diffusion_Data_Conversion|Diffusion Data Conversion]]
 
 
** [[#Modules_by_category_Legacy_Filtering|Filtering]]
 
** [[#Modules_by_category_Legacy_Filtering|Filtering]]
 
** [[#Modules_by_category_Legacy_Registration|Registration]]
 
** [[#Modules_by_category_Legacy_Registration|Registration]]
Line 40: Line 52:
 
*** [[#Modules_by_category_Work_in_Progress_Diffusion_Tensor|Diffusion Tensor]]
 
*** [[#Modules_by_category_Work_in_Progress_Diffusion_Tensor|Diffusion Tensor]]
 
**** [[#Modules_by_category_Diffusion_Tensor_Test|Test]]
 
**** [[#Modules_by_category_Diffusion_Tensor_Test|Test]]
 +
* [[#Modules_by_category_Libraries|Libraries]]
 +
* [[#Modules_by_category_Machine_Learning|Machine Learning]]
 +
* [[#Modules_by_category_Margin_Calculator|Margin Calculator]]
 
* [[#Modules_by_category_Mesh_Generation|Mesh Generation]]
 
* [[#Modules_by_category_Mesh_Generation|Mesh Generation]]
−
* [[#Modules_by_category_MeshGeneration|Mesh Generation]]
+
* [[#Modules_by_category_MeshGeneration|MeshGeneration]]
 
* [[#Modules_by_category_Microscopy|Microscopy]]
 
* [[#Modules_by_category_Microscopy|Microscopy]]
−
* [[#Modules_by_category_MultiVolume_Support|Multi Volume Support]]
+
* [[#Modules_by_category_MultiVolume_Support|MultiVolume Support]]
 +
* [[#Modules_by_category_Pathology|Pathology]]
 
* [[#Modules_by_category_Perk_Tutor|Perk Tutor]]
 
* [[#Modules_by_category_Perk_Tutor|Perk Tutor]]
 
* [[#Modules_by_category_Plastimatch|Plastimatch]]
 
* [[#Modules_by_category_Plastimatch|Plastimatch]]
Line 49: Line 65:
 
** [[#Modules_by_category_Plastimatch_Utilities|Utilities]]
 
** [[#Modules_by_category_Plastimatch_Utilities|Utilities]]
 
* [[#Modules_by_category_Quantification|Quantification]]
 
* [[#Modules_by_category_Quantification|Quantification]]
−
** [[#Modules_by_category_Quantification_ChangeQuantification|Change Quantification]]
+
** [[#Modules_by_category_Quantification_ChangeQuantification|ChangeQuantification]]
 +
* [[#Modules_by_category_Radiology|Radiology]]
 
* [[#Modules_by_category_Radiotherapy|Radiotherapy]]
 
* [[#Modules_by_category_Radiotherapy|Radiotherapy]]
 
* [[#Modules_by_category_Registration|Registration]]
 
* [[#Modules_by_category_Registration|Registration]]
 +
** [[#Modules_by_category_Registration_CMF_Registration|CMF Registration]]
 +
*** [[#Modules_by_category_CMF_Registration_Voxelbase_Registration|Voxelbase Registration]]
 
** [[#Modules_by_category_Registration_Label_Registration|Label Registration]]
 
** [[#Modules_by_category_Registration_Label_Registration|Label Registration]]
 
** [[#Modules_by_category_Registration_Specialized|Specialized]]
 
** [[#Modules_by_category_Registration_Specialized|Specialized]]
Line 57: Line 76:
 
** [[#Modules_by_category_Segmentation_Specialized|Specialized]]
 
** [[#Modules_by_category_Segmentation_Specialized|Specialized]]
 
* [[#Modules_by_category_Sequences|Sequences]]
 
* [[#Modules_by_category_Sequences|Sequences]]
−
* [[#Modules_by_category_Shape_Analysis|Shape Analysis]]
 
 
* [[#Modules_by_category_Slicelets|Slicelets]]
 
* [[#Modules_by_category_Slicelets|Slicelets]]
 +
* [[#Modules_by_category_SlicerProstate|SlicerProstate]]
 
* [[#Modules_by_category_Surface_Models|Surface Models]]
 
* [[#Modules_by_category_Surface_Models|Surface Models]]
 +
* [[#Modules_by_category_TestCases|TestCases]]
 
* [[#Modules_by_category_Testing|Testing]]
 
* [[#Modules_by_category_Testing|Testing]]
 
** [[#Modules_by_category_Testing_IGT_Tests|IGT Tests]]
 
** [[#Modules_by_category_Testing_IGT_Tests|IGT Tests]]
−
** [[#Modules_by_category_Testing_TestCases|Test Cases]]
+
** [[#Modules_by_category_Testing_SlicerRT_Tests|SlicerRT Tests]]
−
* [[#Modules_by_category_Unspecified|Unspecified]]
+
** [[#Modules_by_category_Testing_TestCases|TestCases]]
 +
* [[#Modules_by_category_Ultrasound|Ultrasound]]
 +
* [[#Modules_by_category_Uncategorized|Uncategorized]]
 
* [[#Modules_by_category_Utilities|Utilities]]
 
* [[#Modules_by_category_Utilities|Utilities]]
 
** [[#Modules_by_category_Utilities_BRAINS|BRAINS]]
 
** [[#Modules_by_category_Utilities_BRAINS|BRAINS]]
 
* [[#Modules_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
 
* [[#Modules_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
 +
* [[#Modules_by_category_Virtual_Reality|Virtual Reality]]
 +
* [[#Modules_by_category_Web_System_Tools|Web System Tools]]
 
* [[#Modules_by_category_Wizards|Wizards]]
 
* [[#Modules_by_category_Wizards|Wizards]]
−
* [[#Modules_by_category_Work_in_Progress|Work in Progress]]
 
−
** [[#Modules_by_category_Work_in_Progress_Converters|Converters]]
 
−
** [[#Modules_by_category_Work_in_Progress_Informatics|Informatics]]
 
−
*** [[#Modules_by_category_Informatics_TestCases|Test Cases]]
 
 
* [[#Modules_by_category_XNATSlicer|XNATSlicer]]
 
* [[#Modules_by_category_XNATSlicer|XNATSlicer]]
−
<span id='Modules_by_category_BRAINS'></span>
+
<span id='Modules_by_category_Astronomy'></span>
−
== BRAINS ==
+
== Astronomy ==
−
<span id='Modules_by_category_BRAINS_LabelStatistics'></span>
+
* [[Documentation/Nightly/Modules/AstroVolume|AstroVolume]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
−
=== LabelStatistics ===
+
* [[Documentation/Nightly/Modules/AstroReproject|AstroReproject]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
−
* BRAINSLabel Stats   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/AstroStatistics|AstroStatistics]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroMasking|AstroMasking]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroSampleData|AstroSampleData]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroProfiles|AstroProfiles]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroMomentMaps|AstroMomentMaps]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroPVSlice|AstroPVSlice]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroPVDiagram|AstroPVDiagram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroModeling|AstroModeling]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroWelcome|AstroWelcome]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SlicerAstroDataProbe|SlicerAstroDataProbe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
<span id='Modules_by_category_Cardiac'></span>
 +
 
 +
== Cardiac ==
 +
* [[Documentation/Nightly/Extensions/SlicerHeart|Philips4dUsDicomPatcher]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerHeart|ValveView]]   <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small>
 
<span id='Modules_by_category_Cardiac_MRI_Toolkit'></span>
 
<span id='Modules_by_category_Cardiac_MRI_Toolkit'></span>
 
== Cardiac MRI Toolkit ==
 
== Cardiac MRI Toolkit ==
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitPVAntrumCut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitBooleanREMOVEFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentationWorkflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitRegistrationBRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitAutomaticLeftAtrialScar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitConnectedThresholdFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [[Documentation/Nightly/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitWizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitIsolatedConnectedFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitInhomogeneityCorrection]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitAxialDilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [[Documentation/Nightly/Modules/ScarVisualization|ScarVisualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitRegistration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit LASegmentation Graph Cuts]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitLASegmentationGraphCuts]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
−
<span id='Modules_by_category_CMF_Registration'></span>
+
<span id='Modules_by_category_Chest_Imaging_Platform'></span>
−
== CMF Registration ==
+
== Chest Imaging Platform ==
−
* [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_MIPViewer]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_BodyComposition]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_InteractiveLobeSegmentation]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_TracheaStentPlanning]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_LesionModel]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [http://www.chestimagingplatform.org AirwayInspector]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
<span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span>
+
* [http://www.chestimagingplatform.org CIP_PAARatio]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
=== Voxelbase Registration ===
+
* [http://www.chestimagingplatform.org CIP_CalciumScoring]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_ParenchymaAnalysis]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_ParenchymaSubtypeTraining]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_PointsLabelling]   <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
<span id='Modules_by_category_Chest_Imaging_Platform_Toolkit'></span>
 +
=== Toolkit ===
 +
<span id='Modules_by_category_Toolkit_Particles'></span>
 +
==== Particles ====
 +
* [http://www.chestimagingplatform.org ExtractParticlesFromChestRegionChestType]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org FilterVesselParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org RemoveParticlesFromParticlesDataSet]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org PerturbParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org MergeParticleDataSets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org FilterAirwayParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org FitLobeSurfaceModelsToParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ClassifyFissureParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateStenciledLabelMapFromParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org FilterFissureParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
<span id='Modules_by_category_Toolkit_Processing'></span>
 +
==== Processing ====
 +
* [http://www.chestimagingplatform.org ResampleLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org RescaleLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateMedianFilteredImage]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org LabelMapFromRegionAndTypePoints]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org CropLung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateNLMFilteredImage]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org RemoveChestTypeFromLabelMapUsingParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateAtlasConvexHull]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org RemapLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ComputeFissureFeatureVectors]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateLobeSurfaceModels]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org FilterConnectedComponents]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ExtractChestLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org PerformMorphological]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ExtractFissureBoundaryFromLobeMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org EnhanceFissuresInImage]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GraphCutsOptimization]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateDistanceMapFromLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ResampleCT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ComputeFeatureStrength]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ComputeDistanceMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org QualityControl]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateImageSubVolumes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
<span id='Modules_by_category_Toolkit_Quantification'></span>
 +
==== Quantification ====
 +
* [http://www.chestimagingplatform.org EvaluateLungLobeSegmentationResults]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GetTransformationKappa]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadWriteImageData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ComputeIntensityStatistics]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ComputeCrossSectionalArea]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateParenchymaPhenotypes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org LabelParticlesByChestRegionChestType]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GetTransformationSimilarityMetric]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GetTransformationKappa2D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
<span id='Modules_by_category_Toolkit_Registration'></span>
 +
==== Registration ====
 +
*[[:Category:Documentation/Nightly/Modules/Registration|Introduction to Registration]] <small>(by Dominik Meier)</small>
 +
* [http://www.chestimagingplatform.org RegisterLungAtlas]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org RegisterLabelMaps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org RegisterCT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
<span id='Modules_by_category_Toolkit_Segmentation'></span>
 +
 
 +
==== Segmentation ====
 +
* [http://www.chestimagingplatform.org GenerateOtsuLungCast]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org SegmentLungAirways]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org SegmentLungLobes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GeneratePartialLungLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateSimpleLungMask]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org SplitLeftLungRightLung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateBinaryThinning3D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateLesionSegmentation]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
<span id='Modules_by_category_Toolkit_Utils'></span>
 +
==== Utils ====
 +
* [http://www.chestimagingplatform.org ConvertDicom]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org RegionTypeLocationsToROIVolume]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadVTKWriteNRRDs]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateModel]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateOverlayImages]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ExecuteSystemCommand]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GetStructuresInLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org FindPatchMatch]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ConvertChestRegionChestTypeToLabelMapValue]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org MaskOutLabelMapStructures]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadNRRDsWriteVTK]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ConvertLabelMapValueToChestRegionChestType]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadWriteRegionAndTypePoints]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org MergeChestLabelMaps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadVidaWriteCIP]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadDicomWriteTags]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org TransferRegionAndTypeIndicesToFromPoints]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
<span id='Modules_by_category_CIP'></span>
 +
== CIP ==
 +
* [http://www.chestimagingplatform.org CIP_]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org CIP_Common]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
<span id='Modules_by_category_Converters'></span>
 
<span id='Modules_by_category_Converters'></span>
 
== Converters ==
 
== Converters ==
−
* [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|QuadEdgeSurfaceMesher]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
−
* [[Documentation/Nightly/Modules/CropVolume|Crop Volume]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/CropVolume|CropVolume]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/OrientScalarVolume|OrientScalarVolume]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|Quad Edge Surface Mesher]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+
* [[Documentation/Nightly/Extensions/UKFTractography|ConvertVTK]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small>
−
* [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/VectorToScalarVolume|VectorToScalarVolume]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Modules/CreateDICOMSeries|CreateDICOMSeries]]    <small>(cli, built-in)</small>
 +
* [http://www.chestimagingplatform.org ParticlesDisplay]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org RegionType]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
<span id='Modules_by_category_Developer_Tools'></span>
 
<span id='Modules_by_category_Developer_Tools'></span>
 
== Developer Tools ==
 
== Developer Tools ==
−
* [[Documentation/Nightly/Modules/EventBroker|Event Broker]]
 
−
* [[Documentation/Nightly/Modules/ExecutionModelTour|Execution Model Tour]]    <small>(cli, built-in)</small>
 
−
* Double Arrays    <small>(loadable, built-in)</small>
 
−
* [[Documentation/Nightly/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] extension)</small>
 
 
* [[Documentation/Nightly/Modules/Cameras|Cameras]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Cameras|Cameras]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|Developer Tools For Extensions]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|Developer Tools For Extensions]] extension)</small>
+
* [[Documentation/Nightly/Modules/ExecutionModelTour|ExecutionModelTour]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Extensions/DebuggingTools|NodeModifiedStatistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|DebuggingTools]] extension)</small>
−
* [[Documentation/Nightly/Modules/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]] extension)</small>
+
* [[Documentation/Nightly/Extensions/DebuggingTools|PyDevRemoteDebug]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|DebuggingTools]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ExtensionWizard|ExtensionWizard]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/DebuggingTools|NodeInfo]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|DebuggingTools]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ImageMaker|ImageMaker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ImageMaker|ImageMaker]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ExtensionStats|ExtensionStats]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|DeveloperToolsForExtensions]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DeveloperToolsForExtensions|DeveloperToolsForExtensions]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|DeveloperToolsForExtensions]] extension)</small>
 +
* [[Documentation/Nightly/Modules/EventBroker|EventBroker]]
 +
* DoubleArrays    <small>(loadable, built-in)</small>
 
<span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span>
 
<span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span>
 
=== DICOM Plugins ===
 
=== DICOM Plugins ===
−
* DICOMLongitudinal PETCTPlugin
+
* DICOMParametricMapPlugin
 +
* DicomUltrasoundPlugin
 +
* DICOMSegmentationPlugin
 +
* DICOMSlicerDataBundlePlugin
 +
* DICOMTID1500Plugin
 +
* [[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
 +
* DICOMScalarVolumePlugin
 +
* DICOMDiffusionVolumePlugin
 +
* DICOMLongitudinalPETCTPlugin
 +
* DicomSroImportPlugin
 
* [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
 
* [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
−
* Multi Volume Importer Plugin
+
* DicomRtImportExportPlugin
−
* [[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
+
* MultiVolumeImporterPlugin
−
* DICOMDiffusion Volume Plugin
 
−
* Dicom Rt Import Export Plugin
 
−
* DICOMSegmentation Plugin
 
−
* Dicom Sro Import Plugin
 
−
* DICOMScalar Volume Plugin
 
−
* DICOMSlicer Data Bundle Plugin
 
 
<span id='Modules_by_category_Developer_Tools_Editor_Extensions'></span>
 
<span id='Modules_by_category_Developer_Tools_Editor_Extensions'></span>
 
=== Editor Extensions ===
 
=== Editor Extensions ===
−
* [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]]    <small>(scripted, bundled in [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]] extension)</small>
−
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]    <small>(scripted, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSliceEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
−
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice Effect]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGAEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumorSegmentationEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small>
−
* [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
+
* [[Documentation/Nightly/Extensions/IASEM|BinaryWatershedEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/IASEM|DoubleThresholdEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerPathology|ShortCutEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
 
<span id='Modules_by_category_Developer_Tools_Matlab'></span>
 
<span id='Modules_by_category_Developer_Tools_Matlab'></span>
 
=== Matlab ===
 
=== Matlab ===
−
* [[Documentation/Nightly/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
+
* [[Documentation/Nightly/Modules/MatlabModuleGenerator|MatlabModuleGenerator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|MatlabBridge]] extension)</small>
−
* [[Documentation/Nightly/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
+
* [[Documentation/Nightly/Modules/MatlabCommander|MatlabCommander]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|MatlabBridge]] extension)</small>
 +
<span id='Modules_by_category_Developer_Tools_Segment_Editor_Extensions'></span>
 +
=== Segment Editor Extensions ===
 +
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|SegmentEditorPETTumor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small>
 +
<span id='Modules_by_category_Developer_Tools_Utils'></span>
 +
=== Utils ===
 +
* [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
 
<span id='Modules_by_category_Diffusion'></span>
 
<span id='Modules_by_category_Diffusion'></span>
 
== Diffusion ==
 
== Diffusion ==
−
* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]   <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/DMRIInstall|DMRIInstall]]    <small>(scripted, built-in)</small>
−
* DICOM2Full Brain Tractography   <small>(scripted, built-in)</small>
 
 
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 
=== Diffusion Data Conversion ===
 
=== Diffusion Data Conversion ===
Line 155: Line 296:
 
<span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span>
 
<span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span>
 
=== Diffusion Tensor Images ===
 
=== Diffusion Tensor Images ===
−
* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] extension)</small>
−
* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]   <small>(cli, built-in)</small>
 
−
* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
 
−
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
 
<span id='Modules_by_category_Diffusion_Diffusion_Weighted_Images'></span>
 
<span id='Modules_by_category_Diffusion_Diffusion_Weighted_Images'></span>
 
=== Diffusion Weighted Images ===
 
=== Diffusion Weighted Images ===
−
* [[Documentation/Nightly/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]   <small>(cli, built-in)</small>
+
* BRAINSDWICleanup   <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
+
<span id='Modules_by_category_Diffusion_Import_and_Export'></span>
−
* [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
+
=== Import and Export ===
−
* [[Documentation/Nightly/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]   <small>(cli, built-in)</small>
+
* DWIConvert   <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerDMRI|DICOMTract_to_VTK]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerDMRI|VTK_to_DICOMTract]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
+
<span id='Modules_by_category_Diffusion_Process'></span>
−
<span id='Modules_by_category_Diffusion_FiberAnalysis'></span>
+
=== Process ===
−
=== FiberAnalysis ===
+
* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|DiffusionWeightedVolumeMasking]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
+
* [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWIToDTIEstimation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
+
<span id='Modules_by_category_Diffusion_Quantify'></span>
−
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
+
=== Quantify ===
−
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
+
* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|DiffusionTensorScalarMeasurements]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
* [[Documentation/Nightly/Modules/FiberTractMeasurements|FiberTractMeasurements]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 
<span id='Modules_by_category_Diffusion_Tractography'></span>
 
<span id='Modules_by_category_Diffusion_Tractography'></span>
 
=== Tractography ===
 
=== Tractography ===
−
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|TractographyInteractiveSeeding]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* Fiber Tract Measurements   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/TractographyDisplay|TractographyDisplay]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* Fiber Bundle Label Select   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small>
 +
<span id='Modules_by_category_Tractography_Region-based'></span>
 +
==== Region-based ====
 +
* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|TractographyLabelMapSeeding]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
* [[Documentation/Nightly/Modules/FiberBundleLabelSelect|FiberBundleLabelSelect]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
<span id='Modules_by_category_Diffusion_Utilities'></span>
 +
=== Utilities ===
 +
* BRAINSDWICleanup   <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/ResampleDTIVolume|ResampleDTIVolume]]   <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|FiberBundleToLabelMap]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|ResampleScalarVectorDWIVolume]]   <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerDMRI|DICOM2FullBrainTractography]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 
<span id='Modules_by_category_Editor_Effects'></span>
 
<span id='Modules_by_category_Editor_Effects'></span>
 
== Editor Effects ==
 
== Editor Effects ==
−
* [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
+
* [[Documentation/Nightly/Extensions/WindowLevelEffect|WindowLevelEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|WindowLevelEffect]] extension)</small>
 
<span id='Modules_by_category_EditorEffect'></span>
 
<span id='Modules_by_category_EditorEffect'></span>
 
== EditorEffect ==
 
== EditorEffect ==
−
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
+
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small>
 
<span id='Modules_by_category_Endoscopy'></span>
 
<span id='Modules_by_category_Endoscopy'></span>
 
== Endoscopy ==
 
== Endoscopy ==
Line 190: Line 340:
 
<span id='Modules_by_category_Examples'></span>
 
<span id='Modules_by_category_Examples'></span>
 
== Examples ==
 
== Examples ==
−
* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/Nightly/Modules/FastGrowCut|FastGrowCut]]    <small>(loadable, bundled in [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]] extension)</small>
−
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGA]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
−
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|FastGrowCutSegmenter]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerPathology|ShortCutCore]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
 +
* [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutInteractiveSegmenter]    <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutSegment] extension)</small>
 +
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
 
<span id='Modules_by_category_Exporter'></span>
 
<span id='Modules_by_category_Exporter'></span>
 
== Exporter ==
 
== Exporter ==
−
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
+
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|SlicerToKiwiExporter]] extension)</small>
 +
<span id='Modules_by_category_Filter'></span>
 +
== Filter ==
 +
* IslandRemoval    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Filtering'></span>
 
<span id='Modules_by_category_Filtering'></span>
 
== Filtering ==
 
== Filtering ==
−
* [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/SegmentationSmoothing|SegmentationSmoothing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
−
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBiasFieldCorrection]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/SegmentationSmoothing|Segmentation Smoothing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+
* [[Documentation/Nightly/Modules/ImageLabelCombine|ImageLabelCombine]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|VotingBinaryHoleFillingImageFilter]]   <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/CheckerBoardFilter|CheckerBoardFilter]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/ImageLabelCombine|Image Label Combine]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
−
* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
+
* [https://slicer.readthedocs.io/en/latest/user_guide/modules/extractskeleton.html ExtractSkeleton]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]]    <small>(cli, built-in)</small>
+
* [https://slicer.readthedocs.io/en/latest/user_guide/modules/simplefilters.html SimpleFilters]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli, built-in)</small>
+
* [https://slicer.readthedocs.io/en/latest/user_guide/modules/thresholdscalarvolume.html ThresholdScalarVolume]    <small>(cli, built-in)</small>
 +
* [https://slicer.readthedocs.io/en/latest/user_guide/modules/histogrammatching.html HistogramMatching]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Filtering_Arithmetic'></span>
 
<span id='Modules_by_category_Filtering_Arithmetic'></span>
 
=== Arithmetic ===
 
=== Arithmetic ===
−
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|MultiplyScalarVolumes]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/AddScalarVolumes|AddScalarVolumes]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MaskScalarVolume|MaskScalarVolume]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|SubtractScalarVolumes]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/CastScalarVolume|CastScalarVolume]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/OpenCVExample|BlendVectorVolumes]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/OpenCVExample|OpenCVExample]] extension)</small>
 
<span id='Modules_by_category_Filtering_Denoising'></span>
 
<span id='Modules_by_category_Filtering_Denoising'></span>
 
=== Denoising ===
 
=== Denoising ===
−
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|CurvatureAnisotropicDiffusion]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|GradientAnisotropicDiffusion]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MedianImageFilter|MedianImageFilter]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|GaussianBlurImageFilter]]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Filtering_Morphology'></span>
 
<span id='Modules_by_category_Filtering_Morphology'></span>
 
=== Morphology ===
 
=== Morphology ===
−
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|GrayscaleFillHoleImageFilter]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|GrayscaleGrindPeakImageFilter]]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_IGT'></span>
 
<span id='Modules_by_category_IGT'></span>
 +
 
== IGT ==
 
== IGT ==
−
* [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|Viewpoint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/CollectFiducials|CollectFiducials]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|TransformFusion]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/GyroGuide|GyroGuide]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|GyroGuide]] extension)</small>
−
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|Open IGTLink IF]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|PlusModelCatalogBrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|CreateModels]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/TrackerStabilizer|TrackerStabilizer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/TrackerStabilizer|TrackerStabilizer]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/PathExplorer|PathExplorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|UltrasoundSnapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Markups To Model]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|BreachWarning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|FiducialRegistrationWizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|ModelRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Watchdog]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/ResectionVolume|ResectionVolume]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ResectionPlanner|ResectionPlanner]] extension)</small>
−
* [[Documentation/Nightly/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|PivotCalibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/VolumeResliceDriver|VolumeResliceDriver]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|i Gyne]] extension)</small>
+
* [[Documentation/Nightly/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|FiducialsToModelRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/Watchdog|Watchdog]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] extension)</small>
+
* [[Documentation/Nightly/Modules/CornerAnnotation|CornerAnnotation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|CornerAnnotation]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|OpenIGTLinkIF]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|MarkupsToModel]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/iGyne|iGyne]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|iGyne]] extension)</small>
 +
* [[Documentation/Nightly/Modules/PlusRemote|PlusRemote]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
<span id='Modules_by_category_Informatics'></span>
 
<span id='Modules_by_category_Informatics'></span>
 
== Informatics ==
 
== Informatics ==
−
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/DCMQI|tid1500writer]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
−
* [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/mpReview|mpReviewPreprocessor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mpReview]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SEG2NRRD|SEG2NRRD]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/DCMQI|segimage2itkimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/mpReview|mpReview]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mpReview]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Tables|Tables]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable, built-in)</small>
 +
* DumpSEGFrame    <small>(cli)</small>
 +
* [[Documentation/Nightly/Extensions/DCMQI|tid1500reader]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 +
* Terminologies   <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/SampleData|Sample Data]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/SampleData|SampleData]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable, built-in)</small>
 
 
* [[Documentation/Nightly/Modules/Colors|Colors]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Colors|Colors]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] extension)</small>
+
* [[Documentation/Nightly/Extensions/CurveMaker|CurveMaker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|CurveMaker]] extension)</small>
−
* [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
+
* [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SubjectHierarchy|SubjectHierarchy]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] extension)</small>
 +
<span id='Modules_by_category_Informatics_Converters'></span>
 +
=== Converters ===
 +
* [[Documentation/Nightly/Extensions/DCMQI|itkimage2paramap]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/DCMQI|paramap2itkimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/DCMQI|itkimage2segimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 +
* [[Documentation/Nightly/Modules/EncodeSEG|EncodeSEG]]    <small>(cli)</small>
 
<span id='Modules_by_category_Legacy'></span>
 
<span id='Modules_by_category_Legacy'></span>
 
== Legacy ==
 
== Legacy ==
 
<span id='Modules_by_category_Legacy_Converters'></span>
 
<span id='Modules_by_category_Legacy_Converters'></span>
 
=== Converters ===
 
=== Converters ===
−
* [[Documentation/Nightly/Modules/BSplineToDeformationField|BSpline To Deformation Field]]   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/BSplineToDeformationField|BSplineToDeformationField]]    <small>(cli, built-in)</small>
−
<span id='Modules_by_category_Legacy_Diffusion'></span>
 
−
=== Diffusion ===
 
−
<span id='Modules_by_category_Diffusion_Denoising'></span>
 
−
==== Denoising ====
 
−
* [[Documentation/Nightly/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]    <small>(cli, built-in)</small>
 
−
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 
−
==== Diffusion Data Conversion ====
 
−
* DTIimport    <small>(cli, built-in)</small>
 
−
* DTIexport   <small>(cli, built-in)</small>
 
 
<span id='Modules_by_category_Legacy_Filtering'></span>
 
<span id='Modules_by_category_Legacy_Filtering'></span>
 
=== Filtering ===
 
=== Filtering ===
−
* [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|OtsuThresholdImageFilter]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ResampleScalarVolume|ResampleScalarVolume]]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Legacy_Registration'></span>
 
<span id='Modules_by_category_Legacy_Registration'></span>
 
=== Registration ===
 
=== Registration ===
−
* Test Grid Transform Registration   <small>(cli, built-in)</small>
+
* TestGridTransformRegistration   <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|ExpertAutomatedRegistration]]    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Legacy_Work_in_Progress'></span>
 
<span id='Modules_by_category_Legacy_Work_in_Progress'></span>
 
=== Work in Progress ===
 
=== Work in Progress ===
Line 288: Line 456:
 
<span id='Modules_by_category_Diffusion_Tensor_Test'></span>
 
<span id='Modules_by_category_Diffusion_Tensor_Test'></span>
 
===== Test =====
 
===== Test =====
−
* Diffusion Tensor Test   <small>(cli, built-in)</small>
+
* DiffusionTensorTest   <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Libraries'></span>
 +
== Libraries ==
 +
* [[Documentation/Nightly/Extensions/SlicerOpenCV|OpenCV]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerOpenCV|SlicerOpenCV]] extension)</small>
 +
<span id='Modules_by_category_Machine_Learning'></span>
 +
== Machine Learning ==
 +
* [[Documentation/Nightly/Modules/DeepInfer|DeepInfer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeepInfer|DeepInfer]] extension)</small>
 +
<span id='Modules_by_category_Margin_Calculator'></span>
 +
== Margin Calculator ==
 +
* [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/MarginCalculator|DoseMorphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/MarginCalculator|SyntheticRTDose]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small>
 
<span id='Modules_by_category_Mesh_Generation'></span>
 
<span id='Modules_by_category_Mesh_Generation'></span>
 
== Mesh Generation ==
 
== Mesh Generation ==
−
* [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
+
* [[Documentation/Nightly/Extensions/CleaverExtension|CleaverCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|CleaverExtension]] extension)</small>
 
<span id='Modules_by_category_MeshGeneration'></span>
 
<span id='Modules_by_category_MeshGeneration'></span>
 
== MeshGeneration ==
 
== MeshGeneration ==
−
* [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
+
* [[Documentation/Nightly/Modules/BodyCentricCubicMesh|BodyCentricCubicMesh]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC_3D_I2MConversion]] extension)</small>
−
* [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 
 
<span id='Modules_by_category_Microscopy'></span>
 
<span id='Modules_by_category_Microscopy'></span>
 
== Microscopy ==
 
== Microscopy ==
−
* [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Extensions/IASEM|IASEMImportSeries]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
−
* [[Documentation/Nightly/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
−
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
 
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/IASEM|BinShrink]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/IASEM|LabelObjectStatistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/IASEM|SpacingAwareCurvatureDiffusion]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
<span id='Modules_by_category_MultiVolume_Support'></span>
 
<span id='Modules_by_category_MultiVolume_Support'></span>
 
== MultiVolume Support ==
 
== MultiVolume Support ==
−
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/MultiVolumeImporter|MultiVolumeImporter]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|MultiVolumeExplorer]]    <small>(loadable, built-in)</small>
 +
<span id='Modules_by_category_Pathology'></span>
 +
== Pathology ==
 +
* [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
 
<span id='Modules_by_category_Perk_Tutor'></span>
 
<span id='Modules_by_category_Perk_Tutor'></span>
 
== Perk Tutor ==
 
== Perk Tutor ==
−
* [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Extensions/PerkTutor|PythonMetricsCalculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
−
* [[Documentation/Nightly/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Modules/TransformRecorder|TransformRecorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
−
* [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Modules/PerkEvaluator|PerkEvaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
−
* [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Modules/WorkflowSegmentation|WorkflowSegmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
 
<span id='Modules_by_category_Plastimatch'></span>
 
<span id='Modules_by_category_Plastimatch'></span>
 
== Plastimatch ==
 
== Plastimatch ==
−
* [[Documentation/Nightly/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/DicomSroExport|DicomSroExport]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|PlmRegister]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 
<span id='Modules_by_category_Plastimatch_Registration'></span>
 
<span id='Modules_by_category_Plastimatch_Registration'></span>
 
=== Registration ===
 
=== Registration ===
−
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch_slicer_bspline]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch_slicer_landwarp]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 
<span id='Modules_by_category_Plastimatch_Utilities'></span>
 
<span id='Modules_by_category_Plastimatch_Utilities'></span>
 
=== Utilities ===
 
=== Utilities ===
−
* [[Documentation/Nightly/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|PlastimatchPy]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 
<span id='Modules_by_category_Quantification'></span>
 
<span id='Modules_by_category_Quantification'></span>
 
== Quantification ==
 
== Quantification ==
−
* [[Documentation/Nightly/Modules/dPetBrainQuantification|d Pet Brain Quantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small>
+
* [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis]    <small>(cli, bundled in [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] extension)</small>
−
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+
* [[Documentation/Nightly/Modules/PETLiverUptakeMeasurement|PETLiverUptakeMeasurement]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETLiverUptakeMeasurement|PETLiverUptakeMeasurement]] extension)</small>
−
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndiC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
−
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/Nightly/Modules/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small>
−
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
+
* [[Documentation/Nightly/Modules/HeterogeneityCAD|HeterogeneityCAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|OpenCAD]] extension)</small>
−
* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+
* [[Documentation/Nightly/Modules/ShapeQuantifier|ShapeQuantifier]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
−
* [[Documentation/Nightly/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]] extension)</small>
+
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|QuantitativeIndicesCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
−
* [[Documentation/Nightly/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
+
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandardUptakeValueComputation]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/LabelStatistics|Label Statistics]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactorCalculator]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETDICOM|PETDICOMExtension]] extension)</small>
−
* [[Documentation/Nightly/Modules/T1_Mapping|T1 Mapping]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/T1_Mapping|T1 Mapping]] extension)</small>
+
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|SpinalCurvatureMeasurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
−
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
+
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|QuantitativeIndicesTool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
−
* [[Documentation/Nightly/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]] extension)</small>
+
* SegmentStatistics    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/LabelStatistics|LabelStatistics]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+
* [[Documentation/Nightly/Modules/MeshStatistics|MeshStatistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MeshStatistics|MeshStatisticsExtension]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DWModeling|DWModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
 +
* BRAINSLabelStats    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/PkModeling|PkModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|PkModeling]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImageMaker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|LongitudinalPETCT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DataProbe|DataProbe]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]] extension)</small>
 +
* [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SlicerAstroDataProbe|SlicerAstroDataProbe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AnglePlanes|AnglePlanes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
 +
* [[Documentation/Nightly/Modules/dPetBrainQuantification|dPetBrainQuantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis PetSpectAnalysis] extension)</small>
 +
* [[Documentation/Nightly/Modules/PickAndPaint|PickAndPaint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PickAndPaint|PickAndPaintExtension]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DiceComputation|DiceComputation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|DiceComputation]] extension)</small>
 
<span id='Modules_by_category_Quantification_ChangeQuantification'></span>
 
<span id='Modules_by_category_Quantification_ChangeQuantification'></span>
 
=== ChangeQuantification ===
 
=== ChangeQuantification ===
−
* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+
* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|IntensityDifferenceMetric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|ChangeTracker]] extension)</small>
 +
<span id='Modules_by_category_Radiology'></span>
 +
 
 +
== Radiology ==
 +
* [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SliceTracker|SliceTrackerRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SliceTracker|SliceTrackerZFrameRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
 
<span id='Modules_by_category_Radiotherapy'></span>
 
<span id='Modules_by_category_Radiotherapy'></span>
 
== Radiotherapy ==
 
== Radiotherapy ==
−
* [[Documentation/Nightly/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|DvhComparison]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/DoseVolumeHistogram|DoseVolumeHistogram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|DicomRtImportExport]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/DoseAccumulation|DoseAccumulation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|ExternalBeamPlanning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SegmentComparison|SegmentComparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerRT|PlanarImage]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DoseComparison|DoseComparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SegmentMorphology|SegmentMorphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DicomSroImport|DicomSroImport]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 
<span id='Modules_by_category_Registration'></span>
 
<span id='Modules_by_category_Registration'></span>
 
== Registration ==
 
== Registration ==
−
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]    <small>(cli, built-in)</small>
 
 
* [[Documentation/Nightly/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
−
* Perform Metric Test   <small>(cli, built-in)</small>
+
* PerformMetricTest    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/LandmarkRegistration|LandmarkRegistration]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small>
 +
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]   <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small>
+
<span id='Modules_by_category_Registration_CMF_Registration'></span>
 +
=== CMF Registration ===
 +
* [[Documentation/Nightly/Extensions/CMFreg|ApplyMatrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/LabelExtraction|LabelExtraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/LabelAddition|LabelAddition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SurfaceRegistration|SurfaceRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
<span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span>
 +
==== Voxelbase Registration ====
 +
* [[Documentation/Nightly/Modules/NonGrowing|NonGrowing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/MaskCreation|MaskCreation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
<span id='Modules_by_category_Registration_Label_Registration'></span>
 
<span id='Modules_by_category_Registration_Label_Registration'></span>
 
=== Label Registration ===
 
=== Label Registration ===
−
* [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|Distance Map Based Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+
* [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|DistanceMapBasedRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
 
<span id='Modules_by_category_Registration_Specialized'></span>
 
<span id='Modules_by_category_Registration_Specialized'></span>
 
=== Specialized ===
 
=== Specialized ===
 
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]]   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/FiducialRegistration|FiducialRegistration]]    <small>(cli, built-in)</small>
−
* VBRAINSDemon Warp   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemonWarp]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]    <small>(cli, built-in)</small>
 
 
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/ScatteredTransform|ScatteredTransform]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ScatteredTransform|ScatteredTransform]] extension)</small>
 +
* VBRAINSDemonWarp    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Segmentation'></span>
 
<span id='Modules_by_category_Segmentation'></span>
 
== Segmentation ==
 
== Segmentation ==
−
* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/Nightly/Modules/ROBEXBrainExtraction|ROBEXBrainExtraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ROBEXBrainExtraction|ROBEXBrainExtraction]] extension)</small>
 +
* EMSegmentQuick    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/VolumeClip|VolumeClipWithModel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|VolumeClip]] extension)</small>
 +
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SliceTracker|VolumeClipToLabel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentationCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small>
 +
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScarSegmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScarSegmenter]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SegmentEditor|SegmentEditor]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Modules/AirwaySegmentation|AirwaySegmentation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SkullStripper|SkullStripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|SkullStripper]] extension)</small>
 +
* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorFastMarching]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small>
 +
* [[Documentation/Nightly/Modules/SobolevSegmenter|SobolevSegmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|SobolevSegmenter]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/VolumeClip|VolumeClipWithRoi]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|VolumeClip]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SegmentCAD|SegmentCAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|OpenCAD]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SwissSkullStripper|SwissSkullStripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|SwissSkullStripper]] extension)</small>
 +
* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorFloodFilling]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small>
 +
* [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
 
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
−
* EMSegment Quick    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|SimpleRegionGrowingSegmentation]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/SkullStripper|Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]] extension)</small>
 
−
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
 
 
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
+
* [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] extension)</small>
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/Nightly/Extensions/IntensitySegmenter|IntensitySegmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|IntensitySegmenter]] extension)</small>
−
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
+
* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorWatershed]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small>
−
* [[Documentation/Nightly/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 
−
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
 
−
* [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
 
−
* [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 
−
* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 
 
<span id='Modules_by_category_Segmentation_Specialized'></span>
 
<span id='Modules_by_category_Segmentation_Specialized'></span>
 
=== Specialized ===
 
=== Specialized ===
−
* EMSegment Command Line    <small>(cli, built-in)</small>
 
−
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli, built-in)</small>
 
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|RobustStatisticsSegmenter]]    <small>(cli, built-in)</small>
 +
* EMSegmentCommandLine    <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Sequences'></span>
 
<span id='Modules_by_category_Sequences'></span>
 
== Sequences ==
 
== Sequences ==
−
* [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
−
* [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
 
* [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
−
<span id='Modules_by_category_Shape_Analysis'></span>
+
* [[Documentation/Nightly/Extensions/Sequences|SequenceBrowser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
−
== Shape Analysis ==
+
* [[Documentation/Nightly/Extensions/Sequences|MetafileImporter]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
−
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 
 
<span id='Modules_by_category_Slicelets'></span>
 
<span id='Modules_by_category_Slicelets'></span>
 
== Slicelets ==
 
== Slicelets ==
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]] extension)</small>
 +
* [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small>
 +
* [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysisAlgo]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small>
 +
<span id='Modules_by_category_SlicerProstate'></span>
 +
== SlicerProstate ==
 +
* [[Documentation/Nightly/Extensions/SliceTracker|ZFrameCalibration]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
 
<span id='Modules_by_category_Surface_Models'></span>
 
<span id='Modules_by_category_Surface_Models'></span>
 
== Surface Models ==
 
== Surface Models ==
−
* [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/SurfaceToolbox|SurfaceToolbox]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/MergeModels|Merge Models]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/GrayscaleModelMaker|GrayscaleModelMaker]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/ModelMaker|ModelMaker]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ModelToLabelMap|ModelToLabelMap]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MergeModels|MergeModels]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/EasyClip|EasyClip]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|EasyClip]] extension)</small>
−
* [[Documentation/Nightly/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/LabelMapSmoothing|LabelMapSmoothing]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ProbeVolumeWithModel|ProbeVolumeWithModel]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerIGT|TextureModel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 +
<span id='Modules_by_category_TestCases'></span>
 +
== TestCases ==
 +
* SEGExporterSelfTest
 
<span id='Modules_by_category_Testing'></span>
 
<span id='Modules_by_category_Testing'></span>
 
== Testing ==
 
== Testing ==
−
* Slicer MRBTest
+
* CLI4Test
−
* Self Tests
+
* ThresholdThreadingTest
 +
* [[Documentation/Nightly/Extensions/Scoliosis|ScoliosisMonitoring]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 +
* SlicerMRBSaveRestoreCheckPathsTest
 
* CLIROITest    <small>(cli, built-in)</small>
 
* CLIROITest    <small>(cli, built-in)</small>
−
* CLI4Test
+
* PerformanceTests
−
* Threshold Threading Test
+
* SlicerMRBMultipleSaveRestoreTest
−
* [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis Monitoring]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
+
* SlicerMRBTest
−
* Performance Tests
+
* SEGExporterSelfTest
 +
* SelfTests
 +
* SlicerMRBMultipleSaveRestoreLoopTest
 
<span id='Modules_by_category_Testing_IGT_Tests'></span>
 
<span id='Modules_by_category_Testing_IGT_Tests'></span>
 
=== IGT Tests ===
 
=== IGT Tests ===
−
* Watchdog Self Test
+
* BreachWarningSelfTest
−
* Breach Warning Self Test
+
* WatchdogSelfTest
 +
<span id='Modules_by_category_Testing_SlicerRT_Tests'></span>
 +
=== SlicerRT Tests ===
 +
* IGRTWorkflow_SelfTest
 +
* [[Documentation/Nightly/Extensions/SlicerRT|BatchStructureSetConversion]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 
<span id='Modules_by_category_Testing_TestCases'></span>
 
<span id='Modules_by_category_Testing_TestCases'></span>
 
=== TestCases ===
 
=== TestCases ===
−
* Slice Link Logic    <small>(scripted, built-in)</small>
+
* AtlasTests
−
* Atlas Tests
+
* AddStorableDataAfterSceneViewTest
−
* RSNAQuant Tutorial
+
* test_tractography_display
−
* Volume Rendering Scene Close    <small>(scripted, built-in)</small>
+
* SlicerTransformInteractionTest1
−
* test tractography display
+
* RSNAQuantTutorial
−
* slicer Close Crash Bug2590
+
* NeurosurgicalPlanningTutorialMarkupsSelfTest
−
* Subject Hierarchy Generic Self Test
+
* ChangeTrackerSelfTest
 +
* FiducialLayoutSwitchBug1914
 +
* GraphCutSegmentSelfTest
 +
* SlicerBoundsTest
 +
* UtilTest
 
* Charting    <small>(scripted, built-in)</small>
 
* Charting    <small>(scripted, built-in)</small>
−
* Scene Performance    <small>(scripted, built-in)</small>
+
* [http://brainsia.github.io/CardiacAgatstonMeasures/ CardiacAgatstonMeasures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ CardiacAgatstonMeasures] extension)</small>
−
* Neurosurgical Planning Tutorial Markups Self Test
+
* fiber_visibility_crash2438
−
* Markups In Compare Viewers Self Test
+
* RSNAVisTutorial
−
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures]    <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small>
 
−
* fiber visibility crash2438
 
−
* scene Import2428
 
−
* RSNAVis Tutorial
 
 
* JRC2013Vis
 
* JRC2013Vis
−
* RSNA2012Prostate Demo
+
* AddManyMarkupsFiducialTest
−
* Add Many Markups Fiducial Test
+
* CropVolumeSelfTest
−
* Colors Scalar Bar Self Test
+
* SliceLinkLogic    <small>(scripted, built-in)</small>
−
* Markups In Views Self Test
+
* VolumeRenderingSceneClose    <small>(scripted, built-in)</small>
−
* Change Tracker Self Test
+
* slicerCloseCrashBug2590
−
* Fiducial Layout Switch Bug1914
+
* CLIEventTest
−
* Subject Hierarchy Core Plugins Self Test
+
* [[Documentation/Nightly/Extensions/SlicerDMRI|NsgPlanTracto]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* View Controllers Slice Interpolation Bug1926
+
* MarkupsWidgetsSelfTest
 +
* TablesSelfTest
 +
* SlicerOrientationSelectorTest
 +
* MarkupsInViewsSelfTest
 +
* TwoCLIsInParallelTest
 +
* SubjectHierarchyCorePluginsSelfTest
 +
* SubjectHierarchyGenericSelfTest
 +
* ScenePerformance    <small>(scripted, built-in)</small>
 +
* MarkupsInCompareViewersSelfTest
 +
* sceneImport2428
 +
* RSNA2012ProstateDemo
 +
* DTINotReproducibleIssue3977
 +
* TwoCLIsInARowTest
 +
* ColorsScalarBarSelfTest
 +
* BRAINSFitRigidRegistrationCrashIssue4139
 
* Slicer4Minute    <small>(scripted, built-in)</small>
 
* Slicer4Minute    <small>(scripted, built-in)</small>
−
* Crop Volume Self Test
+
* ViewControllersSliceInterpolationBug1926
−
* label Toggle Bug2049
+
<span id='Modules_by_category_Ultrasound'></span>
−
<span id='Modules_by_category_Unspecified'></span>
+
== Ultrasound ==
−
== Unspecified ==
+
* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertCurvilinearArray]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small>
−
* BRAINSDWICleanup   <small>(cli, built-in)</small>
+
* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertPhasedArray3D]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small>
 +
* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertSliceSeries]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small>
 +
<span id='Modules_by_category_Uncategorized'></span>
 +
== Uncategorized ==
 +
* [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifierCore]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractorLib]]   <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractor]] extension)</small>
 
<span id='Modules_by_category_Utilities'></span>
 
<span id='Modules_by_category_Utilities'></span>
 
== Utilities ==
 
== Utilities ==
−
* [[Documentation/Nightly/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
+
* [[Documentation/Nightly/Modules/ScreenCapture|ScreenCapture]]    <small>(scripted, built-in)</small>
−
* BRAINSStrip Rotation   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/DataStore|DataStore]]   <small>(loadable, built-in)</small>
−
* EMSegment Transform To New Format   <small>(cli, built-in)</small>
+
* DICOMPatcher   <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
+
* BRAINSStripRotation   <small>(cli, built-in)</small>
 +
* EMSegmentTransformToNewFormat   <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Utilities_BRAINS'></span>
 
<span id='Modules_by_category_Utilities_BRAINS'></span>
 
=== BRAINS ===
 
=== BRAINS ===
−
* BRAINSTransform Convert   <small>(cli, built-in)</small>
+
* BRAINSTransformConvert   <small>(cli, built-in)</small>
 
<span id='Modules_by_category_Vascular_Modeling_Toolkit'></span>
 
<span id='Modules_by_category_Vascular_Modeling_Toolkit'></span>
 
== Vascular Modeling Toolkit ==
 
== Vascular Modeling Toolkit ==
−
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [http://slicer.vmtk.org/ CenterlineComputation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
−
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [http://slicer.vmtk.org/ LevelSetSegmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
−
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [http://slicer.vmtk.org/ VesselnessFiltering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 +
<span id='Modules_by_category_Virtual_Reality'></span>
 +
== Virtual Reality ==
 +
* [[Documentation/Nightly/Modules/VirtualReality|VirtualReality]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerVirtualReality|SlicerVirtualReality]] extension)</small>
 +
<span id='Modules_by_category_Web_System_Tools'></span>
 +
== Web System Tools ==
 +
* [[Documentation/Nightly/Modules/DatabaseInteractor|DatabaseInteractor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractor]] extension)</small>
 
<span id='Modules_by_category_Wizards'></span>
 
<span id='Modules_by_category_Wizards'></span>
 
== Wizards ==
 
== Wizards ==
−
* [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Modules/CompareVolumes|CompareVolumes]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+
* [[Documentation/Nightly/Modules/ChangeTracker|ChangeTracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|ChangeTracker]] extension)</small>
−
<span id='Modules_by_category_Work_in_Progress'></span>
 
−
== Work in Progress ==
 
−
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
−
<span id='Modules_by_category_Work_in_Progress_Converters'></span>
 
−
=== Converters ===
 
−
* [[Documentation/Nightly/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
 
−
<span id='Modules_by_category_Work_in_Progress_Informatics'></span>
 
−
=== Informatics ===
 
−
* [[Documentation/Nightly/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
 
−
<span id='Modules_by_category_Informatics_TestCases'></span>
 
−
==== TestCases ====
 
−
* Reporting Self Test
 
−
* Label To DICOMSEGConverter Self Test
 
 
<span id='Modules_by_category_XNATSlicer'></span>
 
<span id='Modules_by_category_XNATSlicer'></span>
 
== XNATSlicer ==
 
== XNATSlicer ==
−
* [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
+
* [[Documentation/Nightly/Extensions/XNATSlicer|XnatSlicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 +
 
 
= Modules by name =
 
= Modules by name =
−
212 modules:
+
367 modules:
 +
* [http://www.nitrc.org/projects/abc ABC]    <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small>
 
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/AddScalarVolumes|AddScalarVolumes]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [http://www.chestimagingplatform.org AirwayInspector]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/Nightly/Modules/AirwaySegmentation|AirwaySegmentation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentationCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|AirwaySegmentation]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AnglePlanes|AnglePlanes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
 
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Extensions/CMFreg|ApplyMatrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/AstroMasking|AstroMasking]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Modules/AstroModeling|AstroModeling]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
−
* [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
+
* [[Documentation/Nightly/Modules/AstroMomentMaps|AstroMomentMaps]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
−
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/AstroProfiles|AstroProfiles]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroPVDiagram|AstroPVDiagram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroPVSlice|AstroPVSlice]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroReproject|AstroReproject]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerAstro|AstroSampleData]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroSmoothing|AstroSmoothing]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroStatistics|AstroStatistics]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Modules/AstroVolume|AstroVolume]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerAstro|AstroWelcome]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/IASEM|BinShrink]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/OpenCVExample|BlendVectorVolumes]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/OpenCVExample|OpenCVExample]] extension)</small>
 +
* [[Documentation/Nightly/Modules/BodyCentricCubicMesh|BodyCentricCubicMesh]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC_3D_I2MConversion]] extension)</small>
 +
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemonWarp]]    <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
−
* BRAINSLabel Stats   <small>(cli, built-in)</small>
+
* BRAINSLabelStats   <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]    <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSResize    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
−
* BRAINSStrip Rotation   <small>(cli, built-in)</small>
+
* BRAINSStripRotation   <small>(cli, built-in)</small>
−
* BRAINSTransform Convert   <small>(cli, built-in)</small>
+
* BRAINSTransformConvert   <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Breach Warning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|BreachWarning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
−
* [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/CastScalarVolume|CastScalarVolume]]    <small>(cli, built-in)</small>
−
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [http://slicer.vmtk.org/ CenterlineComputation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
−
* [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+
* [[Documentation/Nightly/Modules/ChangeTracker|ChangeTracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|ChangeTracker]] extension)</small>
−
* [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/CheckerBoardFilter|CheckerBoardFilter]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_BodyComposition]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_CalciumScoring]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_Common]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_InteractiveLobeSegmentation]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_LesionModel]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_MIPViewer]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit LASegmentation Graph Cuts]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_PAARatio]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_ParenchymaAnalysis]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_ParenchymaSubtypeTraining]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_PointsLabelling]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org CIP_TracheaStentPlanning]    <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/CollectFiducials|Collect Fiducials]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [http://www.chestimagingplatform.org ClassifyFissureParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Extensions/CleaverExtension|CleaverCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|CleaverExtension]] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitAutomaticLeftAtrialScar]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitAxialDilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitBooleanREMOVEFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitConnectedThresholdFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitInhomogeneityCorrection]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitIsolatedConnectedFilter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitLASegmentationGraphCuts]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitPVAntrumCut]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitRegistration]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitRegistrationBRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkitWizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [[Documentation/Nightly/Modules/CollectFiducials|CollectFiducials]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Modules/Colors|Colors]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Colors|Colors]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Modules/CompareVolumes|CompareVolumes]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
+
* [http://www.chestimagingplatform.org ComputeCrossSectionalArea]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org ComputeDistanceMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Create Models]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [http://www.chestimagingplatform.org ComputeFeatureStrength]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/CropVolume|Crop Volume]]    <small>(loadable, built-in)</small>
+
* [http://www.chestimagingplatform.org ComputeFissureFeatureVectors]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org ComputeIntensityStatistics]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] extension)</small>
+
* [http://www.chestimagingplatform.org ConvertChestRegionChestTypeToLabelMapValue]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ConvertDicom]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ConvertLabelMapValueToChestRegionChestType]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Extensions/UKFTractography|ConvertVTK]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small>
 +
* [[Documentation/Nightly/Modules/CornerAnnotation|CornerAnnotation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|CornerAnnotation]] extension)</small>
 +
* [[Documentation/Nightly/Modules/CreateDICOMSeries|CreateDICOMSeries]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerIGT|CreateModels]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 +
* [http://www.chestimagingplatform.org CropLung]   <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Modules/CropVolume|CropVolume]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|CurvatureAnisotropicDiffusion]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/CurveMaker|CurveMaker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|CurveMaker]] extension)</small>
 
* [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Data|Data]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/DatabaseInteractor|DatabaseInteractor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractor]] extension)</small>
−
* [[Documentation/Nightly/Modules/DataStore|Data Store]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractorLib]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|DatabaseInteractor]] extension)</small>
−
* [[Documentation/Nightly/Modules/DiceComputation|Dice Computation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]] extension)</small>
+
* [[Documentation/Nightly/Modules/DataProbe|DataProbe]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Modules/DataStore|DataStore]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/DeepInfer|DeepInfer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeepInfer|DeepInfer]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DiceComputation|DiceComputation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|DiceComputation]] extension)</small>
 
* [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/DICOM|DICOM]]    <small>(scripted, built-in)</small>
−
* DICOM2Full Brain Tractography   <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerDMRI|DICOM2FullBrainTractography]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* DICOMPatcher   <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|DicomRtImportExport]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/DicomSroExport|DicomSroExport]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/DicomSroImport|DicomSroImport]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|Distance Map Based Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerDMRI|DICOMTract_to_VTK]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|DiffusionTensorScalarMeasurements]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|DiffusionWeightedVolumeMasking]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|DistanceMapBasedRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DMRIInstall|DMRIInstall]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Modules/DoseAccumulation|DoseAccumulation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DoseComparison|DoseComparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/MarginCalculator|DoseMorphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small>
 +
* [[Documentation/Nightly/Modules/DoseVolumeHistogram|DoseVolumeHistogram]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 
* [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
−
* [[Documentation/Nightly/Modules/dPetBrainQuantification|d Pet Brain Quantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small>
+
* [[Documentation/Nightly/Modules/dPetBrainQuantification|dPetBrainQuantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis PetSpectAnalysis] extension)</small>
−
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
+
* [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis]    <small>(cli, bundled in [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] extension)</small>
−
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]   <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
+
* DumpSEGFrame   <small>(cli)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|DvhComparison]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWIToDTIEstimation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/DWModeling|DWModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
−
* [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/EasyClip|EasyClip]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|EasyClip]] extension)</small>
 
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
−
* EMSegment Command Line   <small>(cli, built-in)</small>
+
* EMSegmentCommandLine   <small>(cli, built-in)</small>
−
* EMSegment Quick   <small>(loadable, built-in)</small>
+
* EMSegmentQuick   <small>(loadable, built-in)</small>
−
* EMSegment Transform To New Format   <small>(cli, built-in)</small>
+
* EMSegmentTransformToNewFormat   <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/EncodeSEG|EncodeSEG]]    <small>(cli)</small>
 
* [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org EnhanceFissuresInImage]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [http://www.chestimagingplatform.org EvaluateLungLobeSegmentationResults]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [http://www.chestimagingplatform.org ExecuteSystemCommand]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* Fiber Bundle Label Select   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|ExternalBeamPlanning]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
+
* [http://www.chestimagingplatform.org ExtractChestLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
+
* [http://www.chestimagingplatform.org ExtractFissureBoundaryFromLobeMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* Fiber Tract Measurements   <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org ExtractParticlesFromChestRegionChestType]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ExtractSkeleton|ExtractSkeleton]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/FastGrowCut|FastGrowCut]]    <small>(loadable, bundled in [[Documentation/4.3/Modules/FastGrowCut|FastGrowCutEffect]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|FastGrowCutSegmenter]]   <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
−
* [[Documentation/Nightly/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
+
* [[Documentation/Nightly/Modules/FiberBundleLabelSelect|FiberBundleLabelSelect]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
+
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|FiberBundleToLabelMap]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/FiberTractMeasurements|FiberTractMeasurements]]   <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [[Documentation/Nightly/Modules/FiducialRegistration|FiducialRegistration]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|FiducialRegistrationWizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|FiducialsToModelRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/FilmDosimetry|FilmDosimetryAnalysis]] extension)</small>
−
* [[Documentation/Nightly/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org FilterAirwayParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org FilterConnectedComponents]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org FilterFissureParticleData]   <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org FilterVesselParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org FindPatchMatch]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org FitLobeSurfaceModelsToParticleData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|GaussianBlurImageFilter]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small>
 +
* [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysisAlgo]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/GelDosimetry|GelDosimetryAnalysis]] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateAtlasConvexHull]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateBinaryThinning3D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateDistanceMapFromLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateImageSubVolumes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateLesionSegmentation]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateLobeSurfaceModels]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateMedianFilteredImage]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateModel]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateNLMFilteredImage]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateOtsuLungCast]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateOverlayImages]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateParenchymaPhenotypes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GeneratePartialLungLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateSimpleLungMask]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GenerateStenciledLabelMapFromParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GetStructuresInLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GetTransformationKappa]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GetTransformationKappa2D]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org GetTransformationSimilarityMetric]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|GradientAnisotropicDiffusion]]    <small>(cli, built-in)</small>
 +
* [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutInteractiveSegmenter]    <small>(loadable, bundled in [http://publish.uwo.ca/~dchen285/GraphCutSegment/GraphCutSegment.html GraphCutSegment] extension)</small>
 +
* [http://www.chestimagingplatform.org GraphCutsOptimization]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|GrayscaleFillHoleImageFilter]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|GrayscaleGrindPeakImageFilter]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/GrayscaleModelMaker|GrayscaleModelMaker]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
−
* [[Documentation/Nightly/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]] extension)</small>
+
* [[Documentation/Nightly/Modules/GyroGuide|GyroGuide]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|GyroGuide]] extension)</small>
−
* [[Documentation/Nightly/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
+
* [[Documentation/Nightly/Modules/HeterogeneityCAD|HeterogeneityCAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|OpenCAD]] extension)</small>
−
* [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/HistogramMatching|HistogramMatching]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Extensions/IASEM|IASEMImportSeries]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
−
* [[Documentation/Nightly/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|i Gyne]] extension)</small>
+
* [[Documentation/Nightly/Extensions/iGyne|iGyne]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|iGyne]] extension)</small>
−
* [[Documentation/Nightly/Modules/ImageLabelCombine|Image Label Combine]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ImageLabelCombine|ImageLabelCombine]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
+
* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|IntensityDifferenceMetric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|ChangeTracker]] extension)</small>
−
* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
+
* [[Documentation/Nightly/Extensions/IntensitySegmenter|IntensitySegmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|IntensitySegmenter]] extension)</small>
−
* [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* IslandRemoval    <small>(cli, built-in)</small>
−
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Extensions/DCMQI|itkimage2paramap]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
−
* [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Extensions/DCMQI|itkimage2segimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
−
* [[Documentation/Nightly/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|KUtil]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|CarreraSlice]] extension)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Modules/LabelAddition|LabelAddition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
−
* [[Documentation/Nightly/Modules/LabelStatistics|Label Statistics]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/LabelExtraction|LabelExtraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
−
* [[Documentation/Nightly/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
+
* [http://www.chestimagingplatform.org LabelMapFromRegionAndTypePoints]   <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Modules/LabelMapSmoothing|LabelMapSmoothing]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
+
* [[Documentation/Nightly/Extensions/IASEM|LabelObjectStatistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
−
* [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org LabelParticlesByChestRegionChestType]   <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [[Documentation/Nightly/Modules/LabelStatistics|LabelStatistics]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/LandmarkRegistration|LandmarkRegistration]]   <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
+
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScarSegmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScarSegmenter]] extension)</small>
 +
* [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentationWorkflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [http://slicer.vmtk.org/ LevelSetSegmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 +
* [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small>
 
* [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Markups To Model]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|MarkupsToModel]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Modules/MaskCreation|MaskCreation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
−
* [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org MaskOutLabelMapStructures]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MaskScalarVolume|MaskScalarVolume]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/MergeModels|Merge Models]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MedianImageFilter|MedianImageFilter]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
+
* [http://www.chestimagingplatform.org MergeChestLabelMaps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
+
* [[Documentation/Nightly/Modules/MergeModels|MergeModels]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
+
* [http://www.chestimagingplatform.org MergeParticleDataSets]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
+
* [[Documentation/Nightly/Modules/MeshStatistics|MeshStatistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MeshStatistics|MeshStatisticsExtension]] extension)</small>
−
* [[Documentation/Nightly/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|MeshToLabelMap]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/Sequences|MetafileImporter]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ModelMaker|ModelMaker]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerIGT|ModelRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Modules/Models|Models]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Models|Models]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/ModelToLabelMap|ModelToLabelMap]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ModelToModelDistance|ModelToModelDistance]] extension)</small>
−
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/mpReview|mpReview]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mpReview]] extension)</small>
−
* [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Extensions/mpReview|mpReviewPreprocessor]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mpReview]] extension)</small>
−
* [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|MultiplyScalarVolumes]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] extension)</small>
+
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|MultiVolumeExplorer]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Modules/MultiVolumeImporter|MultiVolumeImporter]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|Open IGTLink IF]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBiasFieldCorrection]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|NeedleFinder]] extension)</small>
−
* [[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/NonGrowing|NonGrowing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
−
* [[Documentation/Nightly/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerOpenCV|OpenCV]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerOpenCV|SlicerOpenCV]] extension)</small>
 +
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|OpenIGTLinkIF]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/OpenIGTLinkRemote|OpenIGTLinkRemote]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/OrientScalarVolume|OrientScalarVolume]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/DCMQI|paramap2itkimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 +
* [http://www.chestimagingplatform.org ParticlesDisplay]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Modules/PathExplorer|PathExplorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small>
 
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small>
−
* Perform Metric Test   <small>(cli, built-in)</small>
+
* PerformMetricTest   <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [http://www.chestimagingplatform.org PerformMorphological]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+
* [[Documentation/Nightly/Modules/PerkEvaluator|PerkEvaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
−
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org PerturbParticles]   <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndiC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
−
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
+
* [[Documentation/Nightly/Modules/PETLiverUptakeMeasurement|PETLiverUptakeMeasurement]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETLiverUptakeMeasurement|PETLiverUptakeMeasurement]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandardUptakeValueComputation]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]] extension)</small>
+
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImageMaker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|LongitudinalPETCT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumorSegmentation]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerHeart|Philips4dUsDicomPatcher]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/PickAndPaint|PickAndPaint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PickAndPaint|PickAndPaintExtension]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|PivotCalibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [[Documentation/Nightly/Modules/PkModeling|PkModeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|PkModeling]] extension)</small>
−
* [[Documentation/Nightly/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|PlanarImage]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch_slicer_bspline]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch_slicer_landwarp]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|Quad Edge Surface Mesher]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|PlastimatchPy]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|PlmRegister]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|PlusModelCatalogBrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/PlusRemote|PlusRemote]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ProbeVolumeWithModel|ProbeVolumeWithModel]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/PerkTutor|PythonMetricsCalculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Q3DC|Q3DC]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small>
 +
* [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|QuadEdgeSurfaceMesher]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
 +
* [http://www.chestimagingplatform.org QualityControl]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|QuantitativeIndicesCLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
 +
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|QuantitativeIndicesTool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-IndiC]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|QuantitativeReporting]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerPathology|QuickTCGA]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadDicomWriteTags]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadNRRDsWriteVTK]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadVidaWriteCIP]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadVTKWriteNRRDs]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadWriteImageData]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org ReadWriteRegionAndTypePoints]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
+
* [http://www.chestimagingplatform.org RegionType]    <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org RegionTypeLocationsToROIVolume]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org RegisterCT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli, built-in)</small>
+
* [http://www.chestimagingplatform.org RegisterLabelMaps]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/SampleData|Sample Data]]    <small>(scripted, built-in)</small>
+
* [http://www.chestimagingplatform.org RegisterLungAtlas]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
+
* [http://www.chestimagingplatform.org RemapLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/SceneViews|Scene Views]]    <small>(loadable, built-in)</small>
+
* [http://www.chestimagingplatform.org RemoveChestTypeFromLabelMapUsingParticles]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/SegmentationSmoothing|Segmentation Smoothing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
+
* [http://www.chestimagingplatform.org RemoveParticlesFromParticlesDataSet]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
+
* [http://www.chestimagingplatform.org ResampleCT]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
−
* [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
+
* [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ResampleDTIlogEuclidean|ResampleDTIlogEuclidean]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ResampleDTIVolume|ResampleDTIVolume]]    <small>(cli, built-in)</small>
 +
* [http://www.chestimagingplatform.org ResampleLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|ResampleScalarVectorDWIVolume]]    <small>(cli, built-in)</small>
 +
* [http://www.chestimagingplatform.org RescaleLabelMap]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Modules/ResectionVolume|ResectionVolume]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ResectionPlanner|ResectionPlanner]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ROBEXBrainExtraction|ROBEXBrainExtraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ROBEXBrainExtraction|ROBEXBrainExtraction]] extension)</small>
 +
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|RobustStatisticsSegmenter]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SampleData|SampleData]]    <small>(scripted, built-in)</small>
 +
* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertCurvilinearArray]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small>
 +
* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertPhasedArray3D]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small>
 +
* [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ ScanConvertSliceSeries]    <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ SlicerITKUltrasound] extension)</small>
 +
* [[Documentation/Nightly/Modules/ScarVisualization|ScarVisualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac_MRI_Toolkit] extension)</small>
 +
* [[Documentation/Nightly/Extensions/ScatteredTransform|ScatteredTransform]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ScatteredTransform|ScatteredTransform]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SceneViews|SceneViews]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/ScreenCapture|ScreenCapture]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SEG2NRRD|SEG2NRRD]]    <small>(cli)</small>
 +
* [[Documentation/Nightly/Extensions/DCMQI|segimage2itkimage]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Segmentations|Segmentations]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SegmentationSmoothing|SegmentationSmoothing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|SlicerProstate]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SegmentCAD|SegmentCAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|OpenCAD]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SegmentComparison|SegmentComparison]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SegmentEditor|SegmentEditor]]    <small>(scripted, built-in)</small>
 +
* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorFastMarching]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small>
 +
* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorFloodFilling]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small>
 +
* [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorWatershed]    <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects SegmentEditorExtraEffects] extension)</small>
 +
* [http://www.chestimagingplatform.org SegmentLungAirways]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [http://www.chestimagingplatform.org SegmentLungLobes]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Modules/SegmentMorphology|SegmentMorphology]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
 +
* SegmentStatistics    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/Sequences|SequenceBrowser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
−
* [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Modules/ShapeQuantifier|ShapeQuantifier]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
−
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifierCore]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|ShapeQuantifier]] extension)</small>
−
* [[Documentation/Nightly/Modules/SkullStripper|Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SlicerPathology|ShortCutCore]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
−
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
+
* [[Documentation/Nightly/Modules/SimpleFilters|SimpleFilters]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
+
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|SimpleRegionGrowingSegmentation]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
+
* [[Documentation/Nightly/Modules/SkullStripper|SkullStripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|SkullStripper]] extension)</small>
−
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
+
* [[Documentation/Nightly/Modules/SlicerAstroDataProbe|SlicerAstroDataProbe]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|SlicerAstro]] extension)</small>
−
* [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|SlicerPathology]] extension)</small>
−
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|SlicerToKiwiExporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|SlicerToKiwiExporter]] extension)</small>
−
* [[Documentation/Nightly/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
+
* [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
−
* [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SliceTracker|SliceTrackerRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
−
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/Nightly/Extensions/SliceTracker|SliceTrackerZFrameRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
−
* [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
+
* [[Documentation/Nightly/Modules/SobolevSegmenter|SobolevSegmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|SobolevSegmenter]] extension)</small>
−
* [[Documentation/Nightly/Modules/T1_Mapping|T1 Mapping]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/T1_Mapping|T1 Mapping]] extension)</small>
+
* [[Documentation/Nightly/Extensions/IASEM|SpacingAwareCurvatureDiffusion]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|SpinalCurvatureMeasurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 +
* [http://www.chestimagingplatform.org SplitLeftLungRightLung]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Modules/SubjectHierarchy|SubjectHierarchy]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|SubtractScalarVolumes]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SurfaceRegistration|SurfaceRegistration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SurfaceToolbox|SurfaceToolbox]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactorCalculator]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETDICOM|PETDICOMExtension]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SwissSkullStripper|SwissSkullStripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|SwissSkullStripper]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/MarginCalculator|SyntheticRTDose]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|MarginCalculator]] extension)</small>
 +
* [[Documentation/Nightly/Modules/T1Mapping|T1Mapping]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/T1Mapping|T1Mapping]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Tables|Tables]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
−
* [[Documentation/Nightly/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
+
* Terminologies    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|TextureModel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
+
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|ThresholdScalarVolume]]    <small>(cli, built-in)</small>
−
* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/DCMQI|tid1500reader]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
−
* Tractography Interactive Seeding   <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/DCMQI|tid1500writer]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small>
−
* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/TrackerStabilizer|TrackerStabilizer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/TrackerStabilizer|TrackerStabilizer]] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/TractographyDisplay|TractographyDisplay]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
−
* [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|TractographyInteractiveSeeding]]   <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|TractographyLabelMapSeeding]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 +
* [http://www.chestimagingplatform.org TransferRegionAndTypeIndicesToFromPoints]    <small>(cli, bundled in [http://www.chestimagingplatform.org Chest_Imaging_Platform] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerIGT|TransformFusion]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/TransformRecorder|TransformRecorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
 
* [[Documentation/Nightly/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerIGT|UltrasoundSnapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable, built-in)</small>
−
* VBRAINSDemon Warp   <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerHeart|ValveView]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|SlicerHeart]] extension)</small>
−
* [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
+
* VBRAINSDemonWarp   <small>(cli, built-in)</small>
−
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
+
* [[Documentation/Nightly/Modules/VectorToScalarVolume|VectorToScalarVolume]]    <small>(scripted, built-in)</small>
−
* [[Documentation/Nightly/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
+
* [http://slicer.vmtk.org/ VesselnessFiltering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
−
* [[Documentation/Nightly/Modules/ViewControllers|View Controllers]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerRT|VffFileReader]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|SlicerRT]] extension)</small>
−
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
+
* [[Documentation/Nightly/Modules/ViewControllers|ViewControllers]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/VolumeRendering|Volume Rendering]]    <small>(loadable, built-in)</small>
+
* [[Documentation/Nightly/Extensions/SlicerIGT|Viewpoint]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
−
* [[Documentation/Nightly/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/VirtualReality|VirtualReality]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerVirtualReality|SlicerVirtualReality]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SliceTracker|VolumeClipToLabel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/VolumeClip|VolumeClipWithModel]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|VolumeClip]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/VolumeClip|VolumeClipWithRoi]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|VolumeClip]] extension)</small>
 +
* [[Documentation/Nightly/Modules/VolumeRendering|VolumeRendering]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/VolumeResliceDriver|VolumeResliceDriver]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
+
* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|VotingBinaryHoleFillingImageFilter]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerDMRI|VTK_to_DICOMTract]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|SlicerDMRI]] extension)</small>
 
* [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
 
* [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
−
* [[Documentation/Nightly/Extensions/SlicerIGT|Watchdog]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
+
* [[Documentation/Nightly/Modules/Watchdog|Watchdog]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|SlicerIGT]] extension)</small>
 
* [[Documentation/Nightly/Modules/Welcome|Welcome]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Welcome|Welcome]]    <small>(loadable, built-in)</small>
−
* [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
+
* [[Documentation/Nightly/Extensions/WindowLevelEffect|WindowLevelEffect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|WindowLevelEffect]] extension)</small>
−
* [[Documentation/Nightly/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
+
* [[Documentation/Nightly/Modules/WorkflowSegmentation|WorkflowSegmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|PerkTutor]] extension)</small>
−
* [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
+
* [[Documentation/Nightly/Extensions/XNATSlicer|XnatSlicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SliceTracker|ZFrameCalibration]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SliceTracker|SliceTracker]] extension)</small>

Latest revision as of 18:02, 13 November 2022

Home < Documentation < Nightly < ModuleExtensionListing


Modules by category

46 categories:

Astronomy

Cardiac

Cardiac MRI Toolkit

Chest Imaging Platform

Toolkit

Particles

Processing

Quantification

Registration

Segmentation

Utils

CIP

Converters

Developer Tools

DICOM Plugins

  • DICOMParametricMapPlugin
  • DicomUltrasoundPlugin
  • DICOMSegmentationPlugin
  • DICOMSlicerDataBundlePlugin
  • DICOMTID1500Plugin
  • DICOMPETSUVPlugin
  • DICOMScalarVolumePlugin
  • DICOMDiffusionVolumePlugin
  • DICOMLongitudinalPETCTPlugin
  • DicomSroImportPlugin
  • DICOMRWVMPlugin
  • DicomRtImportExportPlugin
  • MultiVolumeImporterPlugin

Editor Extensions

Matlab

Segment Editor Extensions

Utils

Diffusion

Diffusion Data Conversion

  • DWIConvert (cli, built-in)

Diffusion Tensor Images

Diffusion Weighted Images

  • BRAINSDWICleanup (cli, built-in)

Import and Export

Process

Quantify

Tractography

Region-based

Utilities

Editor Effects

EditorEffect

Endoscopy

Examples

Exporter

Filter

  • IslandRemoval (cli, built-in)

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Converters

Legacy

Converters

Filtering

Registration

Work in Progress

Diffusion Tensor

Test
  • DiffusionTensorTest (cli, built-in)

Libraries

Machine Learning

Margin Calculator

Mesh Generation

MeshGeneration

Microscopy

MultiVolume Support

Pathology

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiology

Radiotherapy

Registration

CMF Registration

Voxelbase Registration

Label Registration

Specialized

Segmentation

Specialized

Sequences

Slicelets

SlicerProstate

Surface Models

TestCases

  • SEGExporterSelfTest

Testing

  • CLI4Test
  • ThresholdThreadingTest
  • ScoliosisMonitoring (scripted, bundled in Scoliosis extension)
  • SlicerMRBSaveRestoreCheckPathsTest
  • CLIROITest (cli, built-in)
  • PerformanceTests
  • SlicerMRBMultipleSaveRestoreTest
  • SlicerMRBTest
  • SEGExporterSelfTest
  • SelfTests
  • SlicerMRBMultipleSaveRestoreLoopTest

IGT Tests

  • BreachWarningSelfTest
  • WatchdogSelfTest

SlicerRT Tests

TestCases

  • AtlasTests
  • AddStorableDataAfterSceneViewTest
  • test_tractography_display
  • SlicerTransformInteractionTest1
  • RSNAQuantTutorial
  • NeurosurgicalPlanningTutorialMarkupsSelfTest
  • ChangeTrackerSelfTest
  • FiducialLayoutSwitchBug1914
  • GraphCutSegmentSelfTest
  • SlicerBoundsTest
  • UtilTest
  • Charting (scripted, built-in)
  • CardiacAgatstonMeasures (scripted, bundled in CardiacAgatstonMeasures extension)
  • fiber_visibility_crash2438
  • RSNAVisTutorial
  • JRC2013Vis
  • AddManyMarkupsFiducialTest
  • CropVolumeSelfTest
  • SliceLinkLogic (scripted, built-in)
  • VolumeRenderingSceneClose (scripted, built-in)
  • slicerCloseCrashBug2590
  • CLIEventTest
  • NsgPlanTracto (scripted, bundled in SlicerDMRI extension)
  • MarkupsWidgetsSelfTest
  • TablesSelfTest
  • SlicerOrientationSelectorTest
  • MarkupsInViewsSelfTest
  • TwoCLIsInParallelTest
  • SubjectHierarchyCorePluginsSelfTest
  • SubjectHierarchyGenericSelfTest
  • ScenePerformance (scripted, built-in)
  • MarkupsInCompareViewersSelfTest
  • sceneImport2428
  • RSNA2012ProstateDemo
  • DTINotReproducibleIssue3977
  • TwoCLIsInARowTest
  • ColorsScalarBarSelfTest
  • BRAINSFitRigidRegistrationCrashIssue4139
  • Slicer4Minute (scripted, built-in)
  • ViewControllersSliceInterpolationBug1926

Ultrasound

Uncategorized

Utilities

  • ScreenCapture (scripted, built-in)
  • DataStore (loadable, built-in)
  • DICOMPatcher (scripted, built-in)
  • BRAINSStripRotation (cli, built-in)
  • EMSegmentTransformToNewFormat (cli, built-in)

BRAINS

  • BRAINSTransformConvert (cli, built-in)

Vascular Modeling Toolkit

Virtual Reality

Web System Tools

Wizards

XNATSlicer

Modules by name

367 modules:

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