Difference between revisions of "Documentation/Nightly/ModuleExtensionListing/Modules by type"
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(This page has been updated using script slicer_wiki_extension_module_listing.py (rev 18eb038). For more details: * https://github.com/Slicer/slicer-wiki-scripts * https://www.slicer.org/wiki/Documentation/Nightly/Developers/Build_system/SlicerBot) |
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* [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/OpenCVExample|Blend Vector Volumes]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/OpenCVExample|Open CVExample]] extension)</small> | ||
* [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small> | * [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small> | ||
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]] <small>(cli, built-in)</small> | ||
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* [http://www.chestimagingplatform.org Crop Lung] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Crop Lung] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] <small>(cli, built-in)</small> | ||
− | * [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]] <small>(cli, | + | * [[Documentation/Nightly/Extensions/SlicerDMRI|DICOMTract to VTK]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small> |
+ | * [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small> | ||
* Diffusion Tensor Test <small>(cli, built-in)</small> | * Diffusion Tensor Test <small>(cli, built-in)</small> | ||
− | * [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]] <small>(cli, | + | * [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small> |
* [[Documentation/Nightly/Modules/Downsize|Downsize]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/Downsize|Downsize]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
* [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] <small>(cli, bundled in [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] extension)</small> | * [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] <small>(cli, bundled in [http://slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DSC_MRI_Analysis DSCMRIAnalysis] extension)</small> | ||
+ | * Dump SEGFrame <small>(cli)</small> | ||
* DWIConvert <small>(cli, built-in)</small> | * DWIConvert <small>(cli, built-in)</small> | ||
− | * [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]] <small>(cli, | + | * [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small> |
* [[Documentation/Nightly/Modules/DWModeling|DWModeling]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small> | * [[Documentation/Nightly/Modules/DWModeling|DWModeling]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small> | ||
* EMSegment Command Line <small>(cli, built-in)</small> | * EMSegment Command Line <small>(cli, built-in)</small> | ||
* EMSegment Transform To New Format <small>(cli, built-in)</small> | * EMSegment Transform To New Format <small>(cli, built-in)</small> | ||
− | * [[Documentation/Nightly/Modules/EncodeSEG|Encode SEG]] <small>(cli | + | * [[Documentation/Nightly/Modules/EncodeSEG|Encode SEG]] <small>(cli)</small> |
* [http://www.chestimagingplatform.org Enhance Fissures In Image] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Enhance Fissures In Image] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org Evaluate Lung Lobe Segmentation Results] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Evaluate Lung Lobe Segmentation Results] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
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* [http://www.chestimagingplatform.org Extract Particles From Chest Region Chest Type] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Extract Particles From Chest Region Chest Type] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]] <small>(cli, built-in)</small> | ||
− | * Fiber Bundle Label Select <small>(cli, | + | * [[Documentation/Nightly/Modules/FiberBundleLabelSelect|Fiber Bundle Label Select]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small> |
− | + | * [[Documentation/Nightly/Modules/FiberTractMeasurements|Fiber Tract Measurements]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small> | |
− | * [[Documentation/Nightly/Modules/FiberTractMeasurements|Fiber Tract Measurements]] <small>(cli, | ||
* [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]] <small>(cli, built-in)</small> | ||
* [http://www.chestimagingplatform.org Filter Airway Particle Data] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Filter Airway Particle Data] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
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* [http://www.chestimagingplatform.org Filter Vessel Particle Data] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Filter Vessel Particle Data] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org Find Patch Match] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Find Patch Match] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
− | |||
− | |||
* [http://www.chestimagingplatform.org Fit Lobe Surface Models To Particle Data] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Fit Lobe Surface Models To Particle Data] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] <small>(cli, built-in)</small> | ||
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* [http://www.chestimagingplatform.org Generate Lobe Surface Models] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Generate Lobe Surface Models] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org Generate Median Filtered Image] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Generate Median Filtered Image] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
+ | * [http://www.chestimagingplatform.org Generate Model] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org Generate NLMFiltered Image] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Generate NLMFiltered Image] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org Generate Otsu Lung Cast] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Generate Otsu Lung Cast] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org Generate Overlay Images] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Generate Overlay Images] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
+ | * [http://www.chestimagingplatform.org Generate Parenchyma Phenotypes] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org Generate Partial Lung Label Map] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Generate Partial Lung Label Map] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
− | * [http://www.chestimagingplatform.org Generate | + | * [http://www.chestimagingplatform.org Generate Simple Lung Mask] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> |
* [http://www.chestimagingplatform.org Generate Stenciled Label Map From Particles] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Generate Stenciled Label Map From Particles] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org Get Structures In Label Map] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Get Structures In Label Map] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
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* [http://www.chestimagingplatform.org Get Transformation Similarity Metric] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Get Transformation Similarity Metric] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]] <small>(cli, built-in)</small> | ||
+ | * [http://www.chestimagingplatform.org Graph Cuts Optimization] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]] <small>(cli, built-in)</small> | ||
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* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small> | * [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small> | ||
* Island Removal <small>(cli, built-in)</small> | * Island Removal <small>(cli, built-in)</small> | ||
+ | * [[Documentation/Nightly/Extensions/DCMQI|itkimage2paramap]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/DCMQI|itkimage2segimage]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> | ||
* [[Documentation/Nightly/Modules/LabelAddition|Label Addition]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/LabelAddition|Label Addition]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
* [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
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* [[Documentation/Nightly/Modules/MergeModels|Merge Models]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/MergeModels|Merge Models]] <small>(cli, built-in)</small> | ||
* [http://www.chestimagingplatform.org Merge Particle Data Sets] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Merge Particle Data Sets] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
− | |||
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small> | * [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small> | ||
* [[Documentation/Nightly/Modules/ModelMaker|Model Maker]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ModelMaker|Model Maker]] <small>(cli, built-in)</small> | ||
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* [[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]] <small>(cli, built-in)</small> | ||
+ | * [[Documentation/Nightly/Extensions/DCMQI|paramap2itkimage]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small> | * [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small> | ||
* Perform Metric Test <small>(cli, built-in)</small> | * Perform Metric Test <small>(cli, built-in)</small> | ||
* [http://www.chestimagingplatform.org Perform Morphological] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Perform Morphological] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org Perturb Particles] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Perturb Particles] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
+ | * [[Documentation/Nightly/Modules/PETLiverUptakeMeasurement|PETLiver Uptake Measurement]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETLiverUptakeMeasurement|PETLiver Uptake Measurement]] extension)</small> | ||
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImage Maker]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small> | * [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImage Maker]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small> | ||
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* [[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]] <small>(cli, built-in)</small> | ||
* [http://www.chestimagingplatform.org Rescale Label Map] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Rescale Label Map] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
+ | * [[Documentation/Nightly/Modules/ROBEXBrainExtraction|ROBEXBrain Extraction]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ROBEXBrainExtraction|ROBEXBrain Extraction]] extension)</small> | ||
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] <small>(cli, built-in)</small> | ||
− | * [[Documentation/Nightly/Modules/SEG2NRRD|SEG2NRRD]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ | + | * [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Scan Convert Curvilinear Array] <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Slicer ITKUltrasound] extension)</small> |
+ | * [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Scan Convert Phased Array3D] <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Slicer ITKUltrasound] extension)</small> | ||
+ | * [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Scan Convert Slice Series] <small>(cli, bundled in [https://kitwaremedical.github.io/SlicerITKUltrasoundDoc/ Slicer ITKUltrasound] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/ScatteredTransform|Scattered Transform]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/ScatteredTransform|Scattered Transform]] extension)</small> | ||
+ | * [[Documentation/Nightly/Modules/SEG2NRRD|SEG2NRRD]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Extensions/DCMQI|segimage2itkimage]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> | ||
* [[Documentation/Nightly/Modules/SegmentationSmoothing|Segmentation Smoothing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small> | * [[Documentation/Nightly/Modules/SegmentationSmoothing|Segmentation Smoothing]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small> | ||
+ | * [http://www.chestimagingplatform.org Segment Lung Airways] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org Segment Lung Lobes] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Segment Lung Lobes] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/SkullStripper|Skull Stripper]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]] extension)</small> | * [[Documentation/Nightly/Modules/SkullStripper|Skull Stripper]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]] extension)</small> | ||
+ | * [[Documentation/Nightly/Modules/SobolevSegmenter|Sobolev Segmenter]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/IASEM|Spacing Aware Curvature Diffusion]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/Nightly/Extensions/IASEM|Spacing Aware Curvature Diffusion]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
* [http://www.chestimagingplatform.org Split Left Lung Right Lung] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Split Left Lung Right Lung] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
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* Test Grid Transform Registration <small>(cli, built-in)</small> | * Test Grid Transform Registration <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]] <small>(cli, built-in)</small> | ||
− | * [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]] <small>(cli, | + | * [[Documentation/Nightly/Extensions/DCMQI|tid1500reader]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> |
+ | * [[Documentation/Nightly/Extensions/DCMQI|tid1500writer]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/DCMQI|DCMQI]] extension)</small> | ||
+ | * [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small> | ||
* [http://www.chestimagingplatform.org Transfer Region And Type Indices To From Points] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Transfer Region And Type Indices To From Points] <small>(cli, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small> | * [[Documentation/Nightly/Modules/UKFTractography|UKFTractography]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] extension)</small> | ||
* VBRAINSDemon Warp <small>(cli, built-in)</small> | * VBRAINSDemon Warp <small>(cli, built-in)</small> | ||
* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]] <small>(cli, built-in)</small> | * [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]] <small>(cli, built-in)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SlicerDMRI|VTK to DICOMTract]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SliceTracker|ZFrame Calibration]] <small>(cli, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small> | ||
== loadable == | == loadable == | ||
* [http://www.chestimagingplatform.org Airway Inspector] <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Airway Inspector] <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable, built-in)</small> | ||
+ | * [[Documentation/Nightly/Modules/AstroModeling|Astro Modeling]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small> | ||
+ | * [[Documentation/Nightly/Modules/AstroSmoothing|Astro Smoothing]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small> | ||
+ | * [[Documentation/Nightly/Modules/AstroVolume|Astro Volume]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SlicerAstro|Astro Welcome]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerRT|Beams]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerRT|Beams]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerIGT|Breach Warning]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerIGT|Breach Warning]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
Line 207: | Line 229: | ||
* [[Documentation/Nightly/Modules/DoseComparison|Dose Comparison]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Modules/DoseComparison|Dose Comparison]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/MarginCalculator|Dose Morphology]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | * [[Documentation/Nightly/Extensions/MarginCalculator|Dose Morphology]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
− | |||
* [[Documentation/Nightly/Modules/DoseVolumeHistogram|Dose Volume Histogram]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Modules/DoseVolumeHistogram|Dose Volume Histogram]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* Double Arrays <small>(loadable, built-in)</small> | * Double Arrays <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/EMSegment|EMSegment]] <small>(loadable, built-in)</small> | ||
* EMSegment Quick <small>(loadable, built-in)</small> | * EMSegment Quick <small>(loadable, built-in)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SlicerRT|External Beam Planning]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]] <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small> | * [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]] <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small> | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
Line 223: | Line 245: | ||
* [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | * [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Models|Models]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Models|Models]] <small>(loadable, built-in)</small> | ||
− | |||
− | |||
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]] <small>(loadable, built-in)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SlicerOpenCV|Open CV]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerOpenCV|Slicer Open CV]] extension)</small> | ||
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|Open IGTLink IF]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/OpenIGTLinkIF|Open IGTLink IF]] <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Modules/OpenIGTLinkRemote|Open IGTLink Remote]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Modules/OpenIGTLinkRemote|Open IGTLink Remote]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
* [http://www.chestimagingplatform.org Particles Display] <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Particles Display] <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [[Documentation/Nightly/Modules/PathExplorer|Path Explorer]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Modules/PathExplorer|Path Explorer]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
+ | * [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small> | * [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerRT|Planar Image]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerRT|Planar Image]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerRT|Plastimatch Py]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerRT|Plastimatch Py]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SlicerPathology|Quick TCGA]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Reformat|Reformat]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Reformat|Reformat]] <small>(loadable, built-in)</small> | ||
* [http://www.chestimagingplatform.org Region Type] <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org Region Type] <small>(loadable, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [[Documentation/Nightly/Modules/SceneViews|Scene Views]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/SceneViews|Scene Views]] <small>(loadable, built-in)</small> | ||
− | * [[Documentation/Nightly/Modules/Segmentations|Segmentations]] <small>(loadable, | + | * [[Documentation/Nightly/Modules/Segmentations|Segmentations]] <small>(loadable, built-in)</small> |
* [[Documentation/Nightly/Modules/SegmentComparison|Segment Comparison]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Modules/SegmentComparison|Segment Comparison]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/Nightly/Modules/SegmentMorphology|Segment Morphology]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Modules/SegmentMorphology|Segment Morphology]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | * [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/Sequences|Sequences]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | * [[Documentation/Nightly/Extensions/Sequences|Sequences]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SlicerPathology|Short Cut Core]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]] extension)</small> | ||
* [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]] <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Modules/Tables|Tables]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Tables|Tables]] <small>(loadable, built-in)</small> | ||
+ | * Terminologies <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small> | * [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small> | ||
− | * [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]] <small>(loadable, | + | * [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small> |
− | * Tractography Interactive Seeding <small>(loadable, | + | * [[Documentation/Nightly/Modules/TractographyInteractiveSeeding|Tractography Interactive Seeding]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small> |
* [[Documentation/Nightly/Extensions/SlicerIGT|Transform Fusion]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerIGT|Transform Fusion]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
+ | * [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Transforms|Transforms]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Transforms|Transforms]] <small>(loadable, built-in)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerIGT|Ultrasound Snapshots]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerIGT|Ultrasound Snapshots]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
Line 258: | Line 284: | ||
* [[Documentation/Nightly/Modules/Watchdog|Watchdog]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Modules/Watchdog|Watchdog]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
* [[Documentation/Nightly/Modules/Welcome|Welcome]] <small>(loadable, built-in)</small> | * [[Documentation/Nightly/Modules/Welcome|Welcome]] <small>(loadable, built-in)</small> | ||
+ | * [[Documentation/Nightly/Modules/WorkflowSegmentation|Workflow Segmentation]] <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> | ||
== scripted == | == scripted == | ||
* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small> | * [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small> | ||
− | * [ | + | * [[Documentation/Nightly/Modules/AnglePlanes|Angle Planes]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|Shape Quantifier]] extension)</small> |
+ | * [[Documentation/Nightly/Extensions/SlicerAstro|Astro Sample Data]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerRT|Batch Structure Set Conversion]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerRT|Batch Structure Set Conversion]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
− | |||
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures] <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures] extension)</small> | * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures] <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures] extension)</small> | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice Effect] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice Effect] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
Line 269: | Line 296: | ||
* [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small> | * [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small> | ||
* Charting <small>(scripted, built-in)</small> | * Charting <small>(scripted, built-in)</small> | ||
+ | * [http://www.chestimagingplatform.org CIP ] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org CIP Body Composition] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org CIP Body Composition] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
+ | * [http://www.chestimagingplatform.org CIP Calcium Scoring] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org CIP Common] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org CIP Common] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
+ | * [http://www.chestimagingplatform.org CIP Interactive Lobe Segmentation] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org CIP Lesion Model] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org CIP Lesion Model] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org CIP MIPViewer] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org CIP MIPViewer] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org CIP PAARatio] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org CIP PAARatio] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
+ | * [http://www.chestimagingplatform.org CIP Parenchyma Analysis] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org CIP Parenchyma Subtype Training] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org CIP Parenchyma Subtype Training] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
+ | * [http://www.chestimagingplatform.org CIP Points Labelling] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://www.chestimagingplatform.org CIP Trachea Stent Planning] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | * [http://www.chestimagingplatform.org CIP Trachea Stent Planning] <small>(scripted, bundled in [http://www.chestimagingplatform.org Chest Imaging Platform] extension)</small> | ||
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
Line 282: | Line 314: | ||
* [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small> | * [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] extension)</small> | * [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] extension)</small> | ||
+ | * [[Documentation/Nightly/Modules/DatabaseInteractor|Database Interactor]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|Database Interactor]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/DatabaseInteractor|Database Interactor Lib]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DatabaseInteractor|Database Interactor]] extension)</small> | ||
* [[Documentation/Nightly/Modules/DataProbe|Data Probe]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/DataProbe|Data Probe]] <small>(scripted, built-in)</small> | ||
+ | * [[Documentation/Nightly/Modules/DeepInfer|Deep Infer]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeepInfer|Deep Infer]] extension)</small> | ||
* [[Documentation/Nightly/Modules/DeveloperToolsForExtensions|Developer Tools For Extensions]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|Developer Tools For Extensions]] extension)</small> | * [[Documentation/Nightly/Modules/DeveloperToolsForExtensions|Developer Tools For Extensions]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|Developer Tools For Extensions]] extension)</small> | ||
* [[Documentation/Nightly/Modules/DICOM|DICOM]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/DICOM|DICOM]] <small>(scripted, built-in)</small> | ||
− | * DICOM2Full Brain Tractography <small>(scripted, built-in)</small> | + | * [[Documentation/Nightly/Extensions/SlicerDMRI|DICOM2Full Brain Tractography]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small> |
+ | * DICOMPatcher <small>(scripted, built-in)</small> | ||
* [[Documentation/Nightly/Modules/DicomSroExport|Dicom Sro Export]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Modules/DicomSroExport|Dicom Sro Export]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
* [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|Distance Map Based Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small> | * [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|Distance Map Based Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small> | ||
+ | * [[Documentation/Nightly/Modules/DMRIInstall|DMRIInstall]] <small>(scripted, built-in)</small> | ||
* [[Documentation/Nightly/Extensions/IASEM|Double Threshold Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/Nightly/Extensions/IASEM|Double Threshold Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
* [[Documentation/Nightly/Modules/dPetBrainQuantification|d Pet Brain Quantification]] <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small> | * [[Documentation/Nightly/Modules/dPetBrainQuantification|d Pet Brain Quantification]] <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerRT|Dvh Comparison]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerRT|Dvh Comparison]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
− | * [[Documentation/Nightly/ | + | * [[Documentation/Nightly/Modules/EasyClip|Easy Clip]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/EasyClip|Easy Clip]] extension)</small> |
* [[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted, built-in)</small> | ||
* [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]] <small>(scripted, built-in)</small> | ||
Line 297: | Line 334: | ||
* [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]] <small>(scripted, built-in)</small> | ||
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] <small>(scripted, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small> | * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] <small>(scripted, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small> | ||
− | * [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]] <small>(scripted, | + | * [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small> |
* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducials To Model Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerIGT|Fiducials To Model Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
+ | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/FilmDosimetry Film Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/FilmDosimetry Film Dosimetry Analysis] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
* [[Documentation/Nightly/Modules/GyroGuide|Gyro Guide]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]] extension)</small> | * [[Documentation/Nightly/Modules/GyroGuide|Gyro Guide]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]] extension)</small> | ||
* [[Documentation/Nightly/Modules/HeterogeneityCAD|Heterogeneity CAD]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small> | * [[Documentation/Nightly/Modules/HeterogeneityCAD|Heterogeneity CAD]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/iGyne|i Gyne]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|i Gyne]] extension)</small> | * [[Documentation/Nightly/Extensions/iGyne|i Gyne]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|i Gyne]] extension)</small> | ||
− | |||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
* [[Documentation/Nightly/Extensions/IASEM|Label Object Statistics]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | * [[Documentation/Nightly/Extensions/IASEM|Label Object Statistics]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small> | ||
Line 310: | Line 347: | ||
* [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentation Workflow]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentation Workflow]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | * [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
− | |||
* [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | * [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
+ | * [[Documentation/Nightly/Modules/MeshStatistics|Mesh Statistics]] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshStatistics Mesh Statistics Extension] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerIGT|Model Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerIGT|Model Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/mpReview|mp Review]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mp Review]] extension)</small> | * [[Documentation/Nightly/Extensions/mpReview|mp Review]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/mpReview|mp Review]] extension)</small> | ||
Line 317: | Line 354: | ||
* [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]] <small>(scripted, built-in)</small> | ||
* [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] extension)</small> | * [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/DebuggingTools|Node Info]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|Debugging Tools]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/DebuggingTools|Node Modified Statistics]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|Debugging Tools]] extension)</small> | * [[Documentation/Nightly/Extensions/DebuggingTools|Node Modified Statistics]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|Debugging Tools]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SlicerDMRI|Nsg Plan Tracto]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerDMRI|Slicer DMRI]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | * [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | ||
* [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small> | * [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerHeart|Philips4d Us Dicom Patcher]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerHeart|Philips4d Us Dicom Patcher]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]] extension)</small> | ||
− | * [ | + | * [[Documentation/Nightly/Modules/PickAndPaint|Pick And Paint]] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PickAndPaint Pick And Paint Extension] extension)</small> |
* [[Documentation/Nightly/Extensions/SlicerRT|Plm Register]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerRT|Plm Register]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SlicerIGT|Plus Model Catalog Browser]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
* [[Documentation/Nightly/Modules/PlusRemote|Plus Remote]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | * [[Documentation/Nightly/Modules/PlusRemote|Plus Remote]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/DebuggingTools|Py Dev Remote Debug]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|Debugging Tools]] extension)</small> | * [[Documentation/Nightly/Extensions/DebuggingTools|Py Dev Remote Debug]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/DebuggingTools|Debugging Tools]] extension)</small> | ||
− | * [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small> | + | * [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small> |
+ | * [[Documentation/Nightly/Modules/Q3DC|Q3DC]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Q3DC|Q3DC]] extension)</small> | ||
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | * [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/QuantitativeReporting|Quantitative Reporting]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/QuantitativeReporting|Quantitative Reporting]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SlicerPathology|Quick TCGAEffect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]] extension)</small> | ||
+ | * [[Documentation/Nightly/Modules/ResectionVolume|Resection Volume]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ResectionPlanner|Resection Planner]] extension)</small> | ||
* [[Documentation/Nightly/Modules/SampleData|Sample Data]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/SampleData|Sample Data]] <small>(scripted, built-in)</small> | ||
* [[Documentation/Nightly/Modules/ScarVisualization|Scar Visualization]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | * [[Documentation/Nightly/Modules/ScarVisualization|Scar Visualization]] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* Scene Performance <small>(scripted, built-in)</small> | * Scene Performance <small>(scripted, built-in)</small> | ||
* [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis Monitoring]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small> | * [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis Monitoring]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small> | ||
+ | * [[Documentation/Nightly/Modules/ScreenCapture|Screen Capture]] <small>(scripted, built-in)</small> | ||
* [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small> | * [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small> | ||
− | * [[Documentation/Nightly/Extensions/ | + | * [[Documentation/Nightly/Modules/SegmentEditor|Segment Editor]] <small>(scripted, built-in)</small> |
+ | * [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Fast Marching] <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Extra Effects] extension)</small> | ||
+ | * [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Flood Filling] <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Extra Effects] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/PETTumorSegmentation|Segment Editor PETTumor]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small> | ||
+ | * [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Watershed] <small>(scripted, bundled in [https://github.com/lassoan/SlicerSegmentEditorExtraEffects Segment Editor Extra Effects] extension)</small> | ||
+ | * Segment Statistics <small>(scripted, built-in)</small> | ||
+ | * [[Documentation/Nightly/Modules/ShapeQuantifier|Shape Quantifier]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|Shape Quantifier]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/ShapeQuantifier|Shape Quantifier Core]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ShapeQuantifier|Shape Quantifier]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SlicerPathology|Short Cut Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]] extension)</small> | ||
* [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]] <small>(scripted, built-in)</small> | ||
* Slice Link Logic <small>(scripted, built-in)</small> | * Slice Link Logic <small>(scripted, built-in)</small> | ||
* Slicer4Minute <small>(scripted, built-in)</small> | * Slicer4Minute <small>(scripted, built-in)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro Data Probe]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerAstro|Slicer Astro]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerPathology|Slicer Pathology]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small> | ||
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small> | * [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker ZFrame Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small> | ||
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small> | * [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small> | ||
* [[Documentation/Nightly/Modules/SurfaceRegistration|Surface Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | * [[Documentation/Nightly/Modules/SurfaceRegistration|Surface Registration]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small> | ||
Line 342: | Line 401: | ||
* [[Documentation/Nightly/Extensions/MarginCalculator|Synthetic RTDose]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | * [[Documentation/Nightly/Extensions/MarginCalculator|Synthetic RTDose]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/MarginCalculator|Margin Calculator]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small> | * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/SlicerIGT|Texture Model]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/SlicerHeart|Valve View]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]] extension)</small> | * [[Documentation/Nightly/Extensions/SlicerHeart|Valve View]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerHeart|Slicer Heart]] extension)</small> | ||
* [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]] <small>(scripted, built-in)</small> | * [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]] <small>(scripted, built-in)</small> | ||
* [http://slicer.vmtk.org/ Vesselness Filtering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | * [http://slicer.vmtk.org/ Vesselness Filtering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
− | * [ | + | * [[Documentation/Nightly/Extensions/SlicerIGT|Viewpoint]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small> |
+ | * [[Documentation/Nightly/Extensions/SliceTracker|Volume Clip To Label]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SliceTracker|Slice Tracker]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Model]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small> | * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Model]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small> | ||
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Roi]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small> | * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Roi]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small> | ||
Line 351: | Line 412: | ||
* [https://github.com/Tomnl/Slicer-Wasp Wasp] <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small> | * [https://github.com/Tomnl/Slicer-Wasp Wasp] <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small> | ||
* [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small> | * [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small> | ||
+ | * [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]] <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small> | ||
__NOTOC__ | __NOTOC__ |
Revision as of 21:08, 18 April 2017
Home < Documentation < Nightly < ModuleExtensionListing < Modules by typeModules by type
3 types:
cli
- ABC (cli, bundled in ABC extension)
- ACPCTransform (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- Apply Matrix (cli, bundled in CMFreg extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Blend Vector Volumes (cli, bundled in Open CVExample extension)
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- BRAINSDemon Warp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabel Stats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSStrip Rotation (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- BSpline To Deformation Field (cli, built-in)
- Cast Scalar Volume (cli, built-in)
- Checker Board Filter (cli, built-in)
- Classify Fissure Particles (cli, bundled in Chest Imaging Platform extension)
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
- CLIROITest (cli, built-in)
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit LASegmentation Graph Cuts (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- Compute Cross Sectional Area (cli, bundled in Chest Imaging Platform extension)
- Compute Distance Map (cli, bundled in Chest Imaging Platform extension)
- Compute Feature Strength (cli, bundled in Chest Imaging Platform extension)
- Compute Fissure Feature Vectors (cli, bundled in Chest Imaging Platform extension)
- Compute Intensity Statistics (cli, bundled in Chest Imaging Platform extension)
- Convert Chest Region Chest Type To Label Map Value (cli, bundled in Chest Imaging Platform extension)
- Convert Dicom (cli, bundled in Chest Imaging Platform extension)
- Convert Label Map Value To Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- Convert VTK (cli, bundled in UKFTractography extension)
- Create DICOMSeries (cli, built-in)
- Crop Lung (cli, bundled in Chest Imaging Platform extension)
- Curvature Anisotropic Diffusion (cli, built-in)
- DICOMTract to VTK (cli, bundled in Slicer DMRI extension)
- Diffusion Tensor Scalar Measurements (cli, bundled in Slicer DMRI extension)
- Diffusion Tensor Test (cli, built-in)
- Diffusion Weighted Volume Masking (cli, bundled in Slicer DMRI extension)
- Downsize (cli, bundled in CMFreg extension)
- DSCMRIAnalysis (cli, bundled in DSCMRIAnalysis extension)
- Dump SEGFrame (cli)
- DWIConvert (cli, built-in)
- DWITo DTIEstimation (cli, bundled in Slicer DMRI extension)
- DWModeling (cli, bundled in Slicer Prostate extension)
- EMSegment Command Line (cli, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Encode SEG (cli)
- Enhance Fissures In Image (cli, bundled in Chest Imaging Platform extension)
- Evaluate Lung Lobe Segmentation Results (cli, bundled in Chest Imaging Platform extension)
- Execute System Command (cli, bundled in Chest Imaging Platform extension)
- Execution Model Tour (cli, built-in)
- Expert Automated Registration (cli, built-in)
- Extract Chest Label Map (cli, bundled in Chest Imaging Platform extension)
- Extract Fissure Boundary From Lobe Map (cli, bundled in Chest Imaging Platform extension)
- Extract Particles From Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- Extract Skeleton (cli, built-in)
- Fiber Bundle Label Select (cli, bundled in Slicer DMRI extension)
- Fiber Tract Measurements (cli, bundled in Slicer DMRI extension)
- Fiducial Registration (cli, built-in)
- Filter Airway Particle Data (cli, bundled in Chest Imaging Platform extension)
- Filter Connected Components (cli, bundled in Chest Imaging Platform extension)
- Filter Fissure Particle Data (cli, bundled in Chest Imaging Platform extension)
- Filter Vessel Particle Data (cli, bundled in Chest Imaging Platform extension)
- Find Patch Match (cli, bundled in Chest Imaging Platform extension)
- Fit Lobe Surface Models To Particle Data (cli, bundled in Chest Imaging Platform extension)
- Gaussian Blur Image Filter (cli, built-in)
- Generate Atlas Convex Hull (cli, bundled in Chest Imaging Platform extension)
- Generate Binary Thinning3D (cli, bundled in Chest Imaging Platform extension)
- Generate Distance Map From Label Map (cli, bundled in Chest Imaging Platform extension)
- Generate Image Sub Volumes (cli, bundled in Chest Imaging Platform extension)
- Generate Lesion Segmentation (cli, bundled in Chest Imaging Platform extension)
- Generate Lobe Surface Models (cli, bundled in Chest Imaging Platform extension)
- Generate Median Filtered Image (cli, bundled in Chest Imaging Platform extension)
- Generate Model (cli, bundled in Chest Imaging Platform extension)
- Generate NLMFiltered Image (cli, bundled in Chest Imaging Platform extension)
- Generate Otsu Lung Cast (cli, bundled in Chest Imaging Platform extension)
- Generate Overlay Images (cli, bundled in Chest Imaging Platform extension)
- Generate Parenchyma Phenotypes (cli, bundled in Chest Imaging Platform extension)
- Generate Partial Lung Label Map (cli, bundled in Chest Imaging Platform extension)
- Generate Simple Lung Mask (cli, bundled in Chest Imaging Platform extension)
- Generate Stenciled Label Map From Particles (cli, bundled in Chest Imaging Platform extension)
- Get Structures In Label Map (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Kappa (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Kappa2D (cli, bundled in Chest Imaging Platform extension)
- Get Transformation Similarity Metric (cli, bundled in Chest Imaging Platform extension)
- Gradient Anisotropic Diffusion (cli, built-in)
- Graph Cuts Optimization (cli, bundled in Chest Imaging Platform extension)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Growing (cli, bundled in CMFreg extension)
- Histogram Matching (cli, built-in)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- Image Label Combine (cli, built-in)
- Image Maker (cli, bundled in Image Maker extension)
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- Island Removal (cli, built-in)
- itkimage2paramap (cli, bundled in DCMQI extension)
- itkimage2segimage (cli, bundled in DCMQI extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Map From Region And Type Points (cli, bundled in Chest Imaging Platform extension)
- Label Map Smoothing (cli, built-in)
- Label Particles By Chest Region Chest Type (cli, bundled in Chest Imaging Platform extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Mask Out Label Map Structures (cli, bundled in Chest Imaging Platform extension)
- Mask Scalar Volume (cli, built-in)
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Median Image Filter (cli, built-in)
- Merge Chest Label Maps (cli, bundled in Chest Imaging Platform extension)
- Merge Models (cli, built-in)
- Merge Particle Data Sets (cli, bundled in Chest Imaging Platform extension)
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
- Model Maker (cli, built-in)
- Model To Label Map (cli, built-in)
- Model To Model Distance (cli, bundled in Model To Model Distance extension)
- Multiply Scalar Volumes (cli, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Non Growing (cli, bundled in CMFreg extension)
- Orient Scalar Volume (cli, built-in)
- Otsu Threshold Image Filter (cli, built-in)
- paramap2itkimage (cli, bundled in DCMQI extension)
- PBNRR (cli, bundled in PBNRR extension)
- Perform Metric Test (cli, built-in)
- Perform Morphological (cli, bundled in Chest Imaging Platform extension)
- Perturb Particles (cli, bundled in Chest Imaging Platform extension)
- PETLiver Uptake Measurement (cli, bundled in PETLiver Uptake Measurement extension)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- plastimatch slicer bspline (cli, bundled in Slicer RT extension)
- plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
- Probe Volume With Model (cli, built-in)
- Quad Edge Surface Mesher (cli, bundled in Slicer Prostate extension)
- Quality Control (cli, bundled in Chest Imaging Platform extension)
- Quantitative Indices CLI (cli, bundled in PET-Indi C extension)
- Read Dicom Write Tags (cli, bundled in Chest Imaging Platform extension)
- Read NRRDs Write VTK (cli, bundled in Chest Imaging Platform extension)
- Read Vida Write CIP (cli, bundled in Chest Imaging Platform extension)
- Read VTKWrite NRRDs (cli, bundled in Chest Imaging Platform extension)
- Read Write Image Data (cli, bundled in Chest Imaging Platform extension)
- Read Write Region And Type Points (cli, bundled in Chest Imaging Platform extension)
- Region Type Locations To ROIVolume (cli, bundled in Chest Imaging Platform extension)
- Register CT (cli, bundled in Chest Imaging Platform extension)
- Register Label Maps (cli, bundled in Chest Imaging Platform extension)
- Register Lung Atlas (cli, bundled in Chest Imaging Platform extension)
- Remap Label Map (cli, bundled in Chest Imaging Platform extension)
- Remove Chest Type From Label Map Using Particles (cli, bundled in Chest Imaging Platform extension)
- Remove Particles From Particles Data Set (cli, bundled in Chest Imaging Platform extension)
- Resample CT (cli, bundled in Chest Imaging Platform extension)
- Resample DTIlog Euclidean (cli, bundled in Resample DTIlog Euclidean extension)
- Resample DTIVolume (cli, built-in)
- Resample Label Map (cli, bundled in Chest Imaging Platform extension)
- Resample Scalar Vector DWIVolume (cli, built-in)
- Resample Scalar Volume (cli, built-in)
- Rescale Label Map (cli, bundled in Chest Imaging Platform extension)
- ROBEXBrain Extraction (cli, bundled in ROBEXBrain Extraction extension)
- Robust Statistics Segmenter (cli, built-in)
- Scan Convert Curvilinear Array (cli, bundled in Slicer ITKUltrasound extension)
- Scan Convert Phased Array3D (cli, bundled in Slicer ITKUltrasound extension)
- Scan Convert Slice Series (cli, bundled in Slicer ITKUltrasound extension)
- Scattered Transform (cli, bundled in Scattered Transform extension)
- SEG2NRRD (cli)
- segimage2itkimage (cli, bundled in DCMQI extension)
- Segmentation Smoothing (cli, bundled in Slicer Prostate extension)
- Segment Lung Airways (cli, bundled in Chest Imaging Platform extension)
- Segment Lung Lobes (cli, bundled in Chest Imaging Platform extension)
- Simple Region Growing Segmentation (cli, built-in)
- Skull Stripper (cli, bundled in Skull Stripper extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Split Left Lung Right Lung (cli, bundled in Chest Imaging Platform extension)
- Subtract Scalar Volumes (cli, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- T1Mapping (cli, bundled in T1Mapping extension)
- Test Grid Transform Registration (cli, built-in)
- Threshold Scalar Volume (cli, built-in)
- tid1500reader (cli, bundled in DCMQI extension)
- tid1500writer (cli, bundled in DCMQI extension)
- Tractography Label Map Seeding (cli, bundled in Slicer DMRI extension)
- Transfer Region And Type Indices To From Points (cli, bundled in Chest Imaging Platform extension)
- UKFTractography (cli, bundled in UKFTractography extension)
- VBRAINSDemon Warp (cli, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- VTK to DICOMTract (cli, bundled in Slicer DMRI extension)
- ZFrame Calibration (cli, bundled in Slice Tracker extension)
loadable
- Airway Inspector (loadable, bundled in Chest Imaging Platform extension)
- Annotations (loadable, built-in)
- Astro Modeling (loadable, bundled in Slicer Astro extension)
- Astro Smoothing (loadable, bundled in Slicer Astro extension)
- Astro Volume (loadable, bundled in Slicer Astro extension)
- Astro Welcome (loadable, bundled in Slicer Astro extension)
- Beams (loadable, bundled in Slicer RT extension)
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Cameras (loadable, built-in)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Colors (loadable, built-in)
- Create Models (loadable, bundled in Slicer IGT extension)
- Crop Volume (loadable, built-in)
- Data (loadable, built-in)
- Data Store (loadable, built-in)
- Dice Computation (loadable, bundled in Dice Computation extension)
- Dicom Rt Import Export (loadable, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Dose Morphology (loadable, bundled in Margin Calculator extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
- Double Arrays (loadable, built-in)
- EMSegment (loadable, built-in)
- EMSegment Quick (loadable, built-in)
- External Beam Planning (loadable, bundled in Slicer RT extension)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Graph Cut Interactive Segmenter (loadable, bundled in Graph Cut Segment extension)
- Isodose (loadable, bundled in Slicer RT extension)
- Markups (loadable, built-in)
- Markups To Model (loadable, bundled in Slicer IGT extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Metafile Importer (loadable, bundled in Sequences extension)
- Models (loadable, built-in)
- Multi Volume Explorer (loadable, built-in)
- Open CV (loadable, bundled in Slicer Open CV extension)
- Open IGTLink IF (loadable, built-in)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Particles Display (loadable, bundled in Chest Imaging Platform extension)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- PETTumor Segmentation (loadable, bundled in PETTumor Segmentation extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Planar Image (loadable, bundled in Slicer RT extension)
- Plastimatch Py (loadable, bundled in Slicer RT extension)
- Quick TCGA (loadable, bundled in Slicer Pathology extension)
- Reformat (loadable, built-in)
- Region Type (loadable, bundled in Chest Imaging Platform extension)
- Scene Views (loadable, built-in)
- Segmentations (loadable, built-in)
- Segment Comparison (loadable, bundled in Slicer RT extension)
- Segment Morphology (loadable, bundled in Slicer RT extension)
- Sequence Browser (loadable, bundled in Sequences extension)
- Sequences (loadable, bundled in Sequences extension)
- Short Cut Core (loadable, bundled in Slicer Pathology extension)
- Subject Hierarchy (loadable, built-in)
- Tables (loadable, built-in)
- Terminologies (loadable, built-in)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Tractography Display (loadable, bundled in Slicer DMRI extension)
- Tractography Interactive Seeding (loadable, bundled in Slicer DMRI extension)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Transforms (loadable, built-in)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Units (loadable, built-in)
- Vff File Reader (loadable, bundled in Slicer RT extension)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
- Volumes (loadable, built-in)
- Watchdog (loadable, bundled in Slicer IGT extension)
- Welcome (loadable, built-in)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
scripted
- Airway Segmentation (scripted, bundled in Airway Segmentation extension)
- Angle Planes (scripted, bundled in Shape Quantifier extension)
- Astro Sample Data (scripted, bundled in Slicer Astro extension)
- Batch Structure Set Conversion (scripted, bundled in Slicer RT extension)
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Cardiac Agatston Measures (scripted, bundled in Cardiac Agatston Measures extension)
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Centerline Computation (scripted, bundled in VMTK extension)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Charting (scripted, built-in)
- CIP (scripted, bundled in Chest Imaging Platform extension)
- CIP Body Composition (scripted, bundled in Chest Imaging Platform extension)
- CIP Calcium Scoring (scripted, bundled in Chest Imaging Platform extension)
- CIP Common (scripted, bundled in Chest Imaging Platform extension)
- CIP Interactive Lobe Segmentation (scripted, bundled in Chest Imaging Platform extension)
- CIP Lesion Model (scripted, bundled in Chest Imaging Platform extension)
- CIP MIPViewer (scripted, bundled in Chest Imaging Platform extension)
- CIP PAARatio (scripted, bundled in Chest Imaging Platform extension)
- CIP Parenchyma Analysis (scripted, bundled in Chest Imaging Platform extension)
- CIP Parenchyma Subtype Training (scripted, bundled in Chest Imaging Platform extension)
- CIP Points Labelling (scripted, bundled in Chest Imaging Platform extension)
- CIP Trachea Stent Planning (scripted, bundled in Chest Imaging Platform extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- Compare Volumes (scripted, built-in)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Database Interactor (scripted, bundled in Database Interactor extension)
- Database Interactor Lib (scripted, bundled in Database Interactor extension)
- Data Probe (scripted, built-in)
- Deep Infer (scripted, bundled in Deep Infer extension)
- Developer Tools For Extensions (scripted, bundled in Developer Tools For Extensions extension)
- DICOM (scripted, built-in)
- DICOM2Full Brain Tractography (scripted, bundled in Slicer DMRI extension)
- DICOMPatcher (scripted, built-in)
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Distance Map Based Registration (scripted, bundled in Slicer Prostate extension)
- DMRIInstall (scripted, built-in)
- Double Threshold Effect (scripted, bundled in IASEM extension)
- d Pet Brain Quantification (scripted, bundled in Pet Spect Analysis extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- Easy Clip (scripted, bundled in Easy Clip extension)
- Editor (scripted, built-in)
- Endoscopy (scripted, built-in)
- Extension Stats (scripted, bundled in Developer Tools For Extensions extension)
- Extension Wizard (scripted, built-in)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- Fiber Bundle To Label Map (scripted, bundled in Slicer DMRI extension)
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
- Film Dosimetry Analysis (scripted, bundled in Film Dosimetry Analysis extension)
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- i Gyne (scripted, bundled in i Gyne extension)
- KUtil (scripted, bundled in Carrera Slice extension)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Label Statistics (scripted, built-in)
- Landmark Registration (scripted, built-in)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
- Margin Calculator (scripted, bundled in Margin Calculator extension)
- Mesh Statistics (scripted, bundled in Mesh Statistics Extension extension)
- Model Registration (scripted, bundled in Slicer IGT extension)
- mp Review (scripted, bundled in mp Review extension)
- mp Review Preprocessor (scripted, bundled in mp Review extension)
- Multi Volume Importer (scripted, built-in)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Node Info (scripted, bundled in Debugging Tools extension)
- Node Modified Statistics (scripted, bundled in Debugging Tools extension)
- Nsg Plan Tracto (scripted, bundled in Slicer DMRI extension)
- PETIndi C (scripted, bundled in PET-Indi C extension)
- PETTumor Segmentation Effect (scripted, bundled in PETTumor Segmentation extension)
- Philips4d Us Dicom Patcher (scripted, bundled in Slicer Heart extension)
- Pick And Paint (scripted, bundled in Pick And Paint Extension extension)
- Plm Register (scripted, bundled in Slicer RT extension)
- Plus Model Catalog Browser (scripted, bundled in Slicer IGT extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- Py Dev Remote Debug (scripted, bundled in Debugging Tools extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Q3DC (scripted, bundled in Q3DC extension)
- Quantitative Indices Tool (scripted, bundled in PET-Indi C extension)
- Quantitative Reporting (scripted, bundled in Quantitative Reporting extension)
- Quick TCGAEffect (scripted, bundled in Slicer Pathology extension)
- Resection Volume (scripted, bundled in Resection Planner extension)
- Sample Data (scripted, built-in)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- Scene Performance (scripted, built-in)
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Screen Capture (scripted, built-in)
- Segment CAD (scripted, bundled in Open CAD extension)
- Segment Editor (scripted, built-in)
- Segment Editor Fast Marching (scripted, bundled in Segment Editor Extra Effects extension)
- Segment Editor Flood Filling (scripted, bundled in Segment Editor Extra Effects extension)
- Segment Editor PETTumor (scripted, bundled in PETTumor Segmentation extension)
- Segment Editor Watershed (scripted, bundled in Segment Editor Extra Effects extension)
- Segment Statistics (scripted, built-in)
- Shape Quantifier (scripted, bundled in Shape Quantifier extension)
- Shape Quantifier Core (scripted, bundled in Shape Quantifier extension)
- Short Cut Effect (scripted, bundled in Slicer Pathology extension)
- Simple Filters (scripted, built-in)
- Slice Link Logic (scripted, built-in)
- Slicer4Minute (scripted, built-in)
- Slicer Astro Data Probe (scripted, bundled in Slicer Astro extension)
- Slicer Pathology (scripted, bundled in Slicer Pathology extension)
- Slicer Prostate (scripted, bundled in Slicer Prostate extension)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Slice Tracker (scripted, bundled in Slice Tracker extension)
- Slice Tracker Registration (scripted, bundled in Slice Tracker extension)
- Slice Tracker ZFrame Registration (scripted, bundled in Slice Tracker extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Surface Registration (scripted, bundled in CMFreg extension)
- Surface Toolbox (scripted, built-in)
- Synthetic RTDose (scripted, bundled in Margin Calculator extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Texture Model (scripted, bundled in Slicer IGT extension)
- Valve View (scripted, bundled in Slicer Heart extension)
- Vector To Scalar Volume (scripted, built-in)
- Vesselness Filtering (scripted, bundled in VMTK extension)
- Viewpoint (scripted, bundled in Slicer IGT extension)
- Volume Clip To Label (scripted, bundled in Slice Tracker extension)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Volume Rendering Scene Close (scripted, built-in)
- Wasp (scripted, bundled in Wasp extension)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
- Xnat Slicer (scripted, bundled in XNATSlicer extension)