Difference between revisions of "Documentation/Nightly"
From Slicer Wiki
(19 intermediate revisions by 3 users not shown) | |||
Line 15: | Line 15: | ||
<span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span> | <span style="color: #555555; font-size: 18px; font-weight: bold;">Where to start ?</span> | ||
---- | ---- | ||
+ | * [[New_users|Getting started]] | ||
+ | : Quick overview about Slicer | ||
+ | |||
* [[Documentation/{{documentation/version}}/Training|Training pages]] | * [[Documentation/{{documentation/version}}/Training|Training pages]] | ||
: Information on how to use Slicer {{documentation/version}} | : Information on how to use Slicer {{documentation/version}} | ||
Line 20: | Line 23: | ||
* [[Documentation/{{documentation/version}}/FAQ|FAQ]] | * [[Documentation/{{documentation/version}}/FAQ|FAQ]] | ||
: Set of common questions/answers | : Set of common questions/answers | ||
− | * [ | + | |
+ | * [https://discourse.slicer.org Discussion Forum] | ||
+ | : The most effective way to get help from the community | ||
+ | |||
+ | <!-- | ||
+ | * [http://slicer-users.65878.n3.nabble.com/ Search users mailing list] | ||
+ | --> | ||
---- | ---- | ||
<span style="color: #555555; font-size: 18px; font-weight: bold;">How to</span> | <span style="color: #555555; font-size: 18px; font-weight: bold;">How to</span> | ||
Line 31: | Line 40: | ||
|valign="top"| | |valign="top"| | ||
---- | ---- | ||
− | <span style="color: #555555; font-size: 18px; font-weight: bold;">Modules | + | <span style="color: #555555; font-size: 18px; font-weight: bold;">Modules</span> |
---- | ---- | ||
+ | |||
+ | {| width="100%" cellspacing="7" cellpadding="2" | ||
+ | |||
+ | |- style="vertical-align:top; border-style:hidden;" | ||
+ | |||
+ | | width="5%" | | ||
+ | | ||
+ | |||
+ | | width="45%" | | ||
+ | |||
+ | [[Image:SlicerAnnotationsV2-Small.png|32px]] [[{{FULLPAGENAME}}/Modules/Annotations|Annotations]] | ||
+ | <br/> | ||
+ | |||
+ | [[Image:DataIcon.png|32px]] [[{{FULLPAGENAME}}/Modules/Data|Data]] | ||
+ | <br/> | ||
+ | |||
+ | [[Image:DataStoreIcon_128.png|32px]] [[{{FULLPAGENAME}}/Modules/DataStore|Data Store]] | ||
+ | <br/> | ||
+ | |||
+ | [[Image:DICOM.png|32px]] [[{{FULLPAGENAME}}/Modules/DICOM|DICOM]] | ||
+ | <br/> | ||
+ | |||
+ | [[Image:Editor.png|32px]] [[{{FULLPAGENAME}}/Modules/Editor|Editor]] | ||
+ | <br/> | ||
+ | |||
+ | [[Image:Markups.png|32px]] [[{{FULLPAGENAME}}/Modules/Markups|Markups]] | ||
+ | <br/> | ||
+ | |||
+ | [[Image:SlicerModels-Small.png|32px]] [[{{FULLPAGENAME}}/Modules/Models|Models]] | ||
+ | <br/> | ||
+ | |||
+ | [[Image:SceneViews.png|32px]] [[{{FULLPAGENAME}}/Modules/SceneViews|Scene Views]] | ||
+ | <br/> | ||
+ | |||
+ | [[Image:Segmentations.png|32px]] [[{{FULLPAGENAME}}/Modules/Segmentations|Segmentations]] | ||
+ | <br/> | ||
+ | |||
+ | [[Image:SegmentEditor.png|32px]] [http://slicer.readthedocs.io/en/latest/user_guide/module_segmenteditor.html Segment Editor] | ||
+ | <br/> | ||
+ | |||
+ | [[Image:Transforms.png|32px]] [[{{FULLPAGENAME}}/Modules/Transforms|Transforms]] | ||
+ | <br/> | ||
+ | |||
+ | [[Image:ViewControllersIcon.png|32px]] [[{{FULLPAGENAME}}/Modules/ViewControllers|View Controllers]] | ||
+ | <br/> | ||
+ | |||
+ | [[Image:VolumeRendering.png|32px]] [[{{FULLPAGENAME}}/Modules/VolumeRendering|Volume Rendering]] | ||
+ | <br/> | ||
+ | |||
+ | [[Image:SlicerVolume-Small.png|32px]] [[{{FULLPAGENAME}}/Modules/Volumes|Volumes]] | ||
+ | <br/> | ||
+ | |||
+ | [[Image:Welcome.png|32px]] [[{{FULLPAGENAME}}/Modules/Welcome|Welcome to Slicer]] | ||
+ | <br/> | ||
+ | |||
+ | | width="50%" | | ||
+ | |||
{{:{{FULLPAGENAME}}/ModuleExtensionListing/TOC}} | {{:{{FULLPAGENAME}}/ModuleExtensionListing/TOC}} | ||
+ | |||
+ | |} | ||
+ | |||
<!-- | <!-- | ||
Line 47: | Line 116: | ||
<span style="color: #555555; font-size: 18px; font-weight: bold;">Developers Corner</span> | <span style="color: #555555; font-size: 18px; font-weight: bold;">Developers Corner</span> | ||
---- | ---- | ||
− | * [[Documentation/ | + | * [[Documentation/Nightly/Developers | Information for Software Developers]]{{updated}} |
: Source code, contribute patch, develop modules | : Source code, contribute patch, develop modules | ||
+ | <!-- | ||
* [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-devel Developers mailing list] / [http://slicer-devel.65872.n3.nabble.com/ Browse archives] | * [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-devel Developers mailing list] / [http://slicer-devel.65872.n3.nabble.com/ Browse archives] | ||
: Intended for discussion of programming related questions | : Intended for discussion of programming related questions | ||
+ | --> | ||
---- | ---- | ||
<span style="color: #555555; font-size: 18px; font-weight: bold;">Miscellaneous</span> | <span style="color: #555555; font-size: 18px; font-weight: bold;">Miscellaneous</span> | ||
Line 66: | Line 137: | ||
: Platform specific issues and considerations | : Platform specific issues and considerations | ||
− | * [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [ | + | * [[Documentation/{{documentation/version}}/Announcements|Announcements]] & [[Documentation/{{documentation/version}}/Acknowledgments|Acknowledgments]] |
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Registration/RegistrationLibrary Registration Library] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Registration/RegistrationLibrary Registration Library] | ||
Line 72: | Line 143: | ||
---- | ---- | ||
− | <span style="color: #555555; font-size: 18px; font-weight: bold;"> | + | <span style="color: #555555; font-size: 18px; font-weight: bold;">Documentation in other languages</span> |
---- | ---- | ||
− | + | {{:{{FULLPAGENAME}}/Lang/ES}} | |
− | + | ||
+ | |} | ||
+ | |||
+ | <!-- | ||
+ | {{:{{FULLPAGENAME}}/ModuleExtensionListing}} | ||
+ | --> | ||
− | |||
− | |||
− | + | {| border="0" align="center" width="100%" valign="top" cellspacing="7" cellpadding="2" | |
− | |||
− | + | |- style="vertical-align:top; border-style:hidden;" | |
− | : | ||
− | * [ | + | | |
− | : | + | |
+ | {{:{{FULLPAGENAME}}/ModuleExtensionListing/Extensions_by_name}} | ||
+ | |||
+ | | | ||
+ | |||
+ | <br/> | ||
+ | <br/> | ||
+ | = Modules by category = | ||
+ | |||
+ | == Converters == | ||
+ | * [[Documentation/Nightly/Modules/CropVolume|Crop Volume]] <small>(loadable)</small> | ||
+ | * [[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]] <small>(scripted)</small> | ||
+ | * [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOM Series]] <small>(cli)</small> | ||
+ | == Diffusion == | ||
+ | * [[Documentation/Nightly/Modules/DMRIInstall|DMRI Install]] <small>(scripted)</small> | ||
+ | <span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span> | ||
+ | === Diffusion Data Conversion === | ||
+ | * DWI Convert <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span> | ||
+ | === Diffusion Weighted Images === | ||
+ | * BRAINS DWI Cleanup <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Diffusion_Import_and_Export'></span> | ||
+ | === Import and Export === | ||
+ | * DWI Convert <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Diffusion_Process'></span> | ||
+ | === Utilities === | ||
+ | * BRAINS DWI Cleanup <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTI Volume]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWI Volume]] <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Endoscopy'></span> | ||
+ | == Endoscopy == | ||
+ | * [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]] <small>(scripted)</small> | ||
+ | <span id='Modules_by_category_Filter'></span> | ||
+ | == Filter == | ||
+ | * IslandRemoval <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Filtering'></span> | ||
+ | == Filtering == | ||
+ | * [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4 ITK Bias Field Correction]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/ImageLabelCombine|Image Label Combine]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]] <small>(scripted)</small> | ||
+ | * [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]] <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Filtering_Arithmetic'></span> | ||
+ | === Arithmetic === | ||
+ | * [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]] <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Filtering_Denoising'></span> | ||
+ | === Denoising === | ||
+ | * [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/MedianImageFilter|Median Image Filter]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Filtering_Morphology'></span> | ||
+ | === Morphology === | ||
+ | * [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]] <small>(cli)</small> | ||
+ | <span id='Modules_by_category_IGT'></span> | ||
+ | == IGT == | ||
+ | * [[Documentation/Nightly/Modules/OpenIGTLinkIF|OpenIGTLink IF]] <small>(loadable)</small> | ||
+ | <span id='Modules_by_category_Informatics'></span> | ||
+ | == Informatics == | ||
+ | * [[Documentation/Nightly/Modules/SEG2NRRD|SEG 2 NRRD]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/Tables|Tables]] <small>(loadable)</small> | ||
+ | * [[Documentation/Nightly/Modules/Data|Data]] <small>(loadable)</small> | ||
+ | * DumpSEGFrame <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/Terminologies|Terminologies]] <small>(loadable)</small> | ||
+ | * [[Documentation/Nightly/Modules/Units|Units]] <small>(loadable)</small> | ||
+ | * [[Documentation/Nightly/Modules/DICOM|DICOM]] <small>(scripted)</small> | ||
+ | * [[Documentation/Nightly/Modules/SampleData|Sample Data]] <small>(scripted)</small> | ||
+ | * [[Documentation/Nightly/Modules/Colors|Colors]] <small>(loadable)</small> | ||
+ | * [[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable)</small> | ||
+ | * [[Documentation/Nightly/Modules/Markups|Markups]] <small>(loadable)</small> | ||
+ | <span id='Modules_by_category_Informatics_Converters'></span> | ||
+ | === Converters === | ||
+ | * [[Documentation/Nightly/Modules/EncodeSEG|Encode SEG]] <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Legacy'></span> | ||
+ | == Legacy == | ||
+ | <span id='Modules_by_category_Legacy_Converters'></span> | ||
+ | === Converters === | ||
+ | * [[Documentation/Nightly/Modules/BSplineToDeformationField|BSpline To Deformation Field]] <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Legacy_Filtering'></span> | ||
+ | === Filtering === | ||
+ | * [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]] <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Legacy_Registration'></span> | ||
+ | === Registration === | ||
+ | * Test Grid Transform Registration <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|Expert Automated Registration]] <small>(cli)</small> | ||
+ | == MultiVolume Support == | ||
+ | * [[Documentation/Nightly/Modules/MultiVolumeImporter|MultiVolume Importer]] <small>(scripted)</small> | ||
+ | * [[Documentation/Nightly/Modules/MultiVolumeExplorer|MultiVolume Explorer]] <small>(loadable)</small> | ||
+ | <span id='Modules_by_category_Quantification'></span> | ||
+ | == Quantification == | ||
+ | * [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PET Standard Uptake Value Computation]] <small>(cli)</small> | ||
+ | * SegmentStatistics <small>(scripted)</small> | ||
+ | * [[Documentation/Nightly/Modules/LabelStatistics|Label Statistics]] <small>(scripted)</small> | ||
+ | * BRAINSLabelStats <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/DataProbe|Data Probe]] <small>(scripted)</small> | ||
+ | <span id='Modules_by_category_Registration'></span> | ||
+ | == Registration == | ||
+ | * [[Documentation/Nightly/Modules/Transforms|Transforms]] <small>(loadable)</small> | ||
+ | * BRAINSResize <small>(cli)</small> | ||
+ | * PerformMetricTest <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/LandmarkRegistration|Landmark Registration]] <small>(scripted)</small> | ||
+ | * [[Documentation/Nightly/Modules/BRAINSResample|BRAINS Resample]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/BRAINSFit|General registration (BRAINS)]] <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Registration_Specialized'></span> | ||
+ | === Specialized === | ||
+ | * [[Documentation/Nightly/Modules/ACPCTransform|AC-PC Transform]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINS Demon Warp]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/Reformat|Reformat]] <small>(loadable)</small> | ||
+ | * VBRAINSDemonWarp <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Segmentation'></span> | ||
+ | == Segmentation == | ||
+ | * [[Documentation/Nightly/Modules/Segmentations|Segmentations]] <small>(loadable)</small> | ||
+ | * [http://slicer.readthedocs.io/en/latest/user_guide/module_segmenteditor.html Segment Editor] <small>(scripted)</small> | ||
+ | * [[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted)</small> | ||
+ | * [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/EMSegment|EMSegment]] <small>(loadable)</small> | ||
+ | * EMSegmentQuick <small>(loadable)</small> | ||
+ | <span id='Modules_by_category_Segmentation_Specialized'></span> | ||
+ | === Specialized === | ||
+ | * BRAINS ROI Auto <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] <small>(cli)</small> | ||
+ | * EMSegment CommandLine <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Surface_Models'></span> | ||
+ | == Surface Models == | ||
+ | * [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]] <small>(scripted)</small> | ||
+ | * [[Documentation/Nightly/Modules/GrayscaleModelMaker|Grayscale Model Maker]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/ModelMaker|Model Maker]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/ModelToLabelMap|Model To LabelMap]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/MergeModels|Merge Models]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/LabelMapSmoothing|LabelMap Smoothing]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]] <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Utilities'></span> | ||
+ | == Utilities == | ||
+ | * [[Documentation/Nightly/Modules/ScreenCapture|Screen Capture]] <small>(scripted)</small> | ||
+ | * [[Documentation/Nightly/Modules/DataStore|Data Store]] <small>(loadable)</small> | ||
+ | * DICOM Patcher <small>(scripted)</small> | ||
+ | * BRAINS Strip Rotation <small>(cli)</small> | ||
+ | * EMSegment Transform To New Format <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Utilities_BRAINS'></span> | ||
+ | === BRAINS === | ||
+ | * BRAINS Transform Convert <small>(cli)</small> | ||
+ | <span id='Modules_by_category_Wizards'></span> | ||
+ | == Wizards == | ||
+ | * [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]] <small>(scripted)</small> | ||
+ | |||
+ | <span id='Modules_by_category_Developer_Tools'></span> | ||
+ | == Developer Tools == | ||
+ | * [[Documentation/Nightly/Modules/Cameras|Cameras]] <small>(loadable)</small> | ||
+ | * [[Documentation/Nightly/Modules/ExecutionModelTour|Execution Model Tour]] <small>(cli)</small> | ||
+ | * [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]] <small>(scripted)</small> | ||
+ | * [[Documentation/Nightly/Modules/EventBroker|Event Broker]] | ||
+ | * Double Arrays <small>(loadable)</small> | ||
+ | <span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span> | ||
+ | === DICOM Plugins === | ||
+ | * DICOMParametricMapPlugin | ||
+ | * DicomUltrasoundPlugin | ||
+ | * DICOMSegmentationPlugin | ||
+ | * DICOMSlicerDataBundlePlugin | ||
+ | * DICOMTID1500Plugin | ||
+ | * [[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]] | ||
+ | * DICOMScalarVolumePlugin | ||
+ | * DICOMDiffusionVolumePlugin | ||
+ | * DICOMLongitudinalPETCTPlugin | ||
+ | * DicomSroImportPlugin | ||
+ | * [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]] | ||
+ | * DicomRtImportExportPlugin | ||
+ | * MultiVolumeImporterPlugin | ||
|} | |} | ||
− | |||
− |
Revision as of 20:32, 27 April 2018
Home < Documentation < Nightly
For the latest Slicer documentation, visit the read-the-docs. |
Nightly 4.10 4.8 4.6 4.5 4.4 4.3 4.2 4.1 4.0 3.6 3.5 3.4 3.2 ALL VERSIONS
Where to start ?
How to Slicer Application
|
Modules
|
Developers Corner
Miscellaneous
Documentation in other languages
|