User:UpdateBot/Issue-2843-Consolidated-Extension-List

• Modules by name
• Modules by category
• Modules by contributing organization
• Modules by contributing individual
• Extensions by name
• Extensions by category
• Extensions by contributing organization
• Extensions by contributing individual

Modules by name

156 modules:

• ABC ABC
• ACPCTransform builtin
• Add Scalar Volumes builtin
• Airway Segmentation CLI AirwaySegmentation
• Annotations builtin
• Apply Matrix CMFreg
• Bin Shrink IASEM
• Body Centric Cubic Mesh CBC_3D_I2MConversion
• BRAINSDemon Warp builtin
• BRAINSDWICleanup builtin
• BRAINSFit builtin
• BRAINSLabel Stats builtin
• BRAINSResample builtin
• BRAINSResize builtin
• BRAINSROIAuto builtin
• BRAINSTransform Convert builtin
• Carrera Slice CarreraSlice
• Cast Scalar Volume builtin
• Change Tracker ChangeTracker
• Checker Board Filter builtin
• Cleaver CLI CleaverExtension
• Colors builtin
• Compare Volumes CMFreg
• Corner Annotation CornerAnnotation
• Create DICOMSeries builtin
• Crop Volume builtin
• Curvature Anisotropic Diffusion builtin
• Curve Maker CurveMaker
• Data builtin
• Data Probe builtin
• Data Store builtin
• Dice Computation DiceComputation
• DICOM builtin
• DICOM2Full Brain Tractography builtin
• Diffusion Tensor Scalar Measurements builtin
• Diffusion Weighted Volume Masking builtin
• Dilate Label ErodeDilateLabel
• Downsize CMFreg
• DWIConvert builtin
• DWIJoint Rician LMMSEFilter builtin
• DWIRician LMMSEFilter builtin
• DWITo DTIEstimation builtin
• Editor builtin
• EMSegment builtin
• EMSegment Command Line builtin
• EMSegment Quick builtin
• EMSegment Transform To New Format builtin
• Endoscopy builtin
• Erode Label ErodeDilateLabel
• Extract Skeleton builtin
• Fast Grow Cut FastGrowCutEffect
• Fast Grow Cut Segmenter CarreraSlice
• Fiber Bundle Label Select builtin
• Fiber Bundle To Label Map builtin
• Fiducial Registration builtin
• Finsler Backtracing FinslerTractography
• Finsler Tractography FinslerTractography
• Gaussian Blur Image Filter builtin
• Gel Dosimetry Analysis Algo GelDosimetryAnalysis
• Gradient Anisotropic Diffusion builtin
• Grayscale Fill Hole Image Filter builtin
• Grayscale Grind Peak Image Filter builtin
• Grayscale Model Maker builtin
• Growing CMFreg
• Gyro Guide GyroGuide
• Histogram Matching builtin
• IASEMImport IASEM
• IASEMImport Series IASEM
• IGR3D MABMIS Testing MABMIS
• IGR3D MABMIS Training MABMIS
• i Gyne iGyne
• Image Label Combine builtin
• Intensity Difference Metric ChangeTracker
• Intensity Segmenter IntensitySegmenter
• KUtil CarreraSlice
• Label Addition CMFreg
• Label Extraction CMFreg
• Label Map Smoothing builtin
• Label Object Statistics IASEM
• Label Statistics builtin
• Label To DICOMSEGConverter Reporting
• Landmark Registration CMFreg
• LAScar Segmenter LAScarSegmenter
• Longitudinal PETCT LongitudinalPETCT
• Markups builtin
• Mask Creation CMFreg
• Mask Scalar Volume builtin
• Median Image Filter builtin
• Merge Models builtin
• Mesh Compression CBC_3D_I2MConversion
• Metafile Importer MultidimData
• Model Maker builtin
• Models builtin
• Model To Label Map builtin
• Multiply Scalar Volumes builtin
• Multi Volume Explorer builtin
• Multi Volume Importer builtin
• N4ITKBias Field Correction builtin
• Needle Finder NeedleFinder
• Non Growing CMFreg
• Open IGTLink IF builtin
• Orient Scalar Volume builtin
• PBNRR PBNRR
• Percutaneous Approach Analysis PercutaneousApproachAnalysis
• Perform Metric Test builtin
• Perk Evaluator PerkTutor
• PETStandard Uptake Value Computation builtin
• PETSUVImage Maker LongitudinalPETCT
• Pk Modeling PkModeling
• Port Placement PortPlacement
• Probe Volume With Model builtin
• Python Metrics Calculator PerkTutor
• Reformat builtin
• Reporting Reporting
• Resample DTIVolume builtin
• Resample Scalar Vector DWIVolume builtin
• Robust Statistics Segmenter builtin
• Sample Data builtin
• Scene Views builtin
• Segmentation Aided Registration SegmentationAidedRegistration
• Sequence Browser MultidimData
• Sequences MultidimData
• Simple Filters builtin
• Simple Region Growing Segmentation builtin
• Slicer To Kiwi Exporter SlicerToKiwiExporter
• Sobolev Segmenter SobolevSegmenter
• Spacing Aware Curvature Diffusion IASEM
• Spinal Curvature Measurement Scoliosis
• Subject Hierarchy builtin
• Subtract Scalar Volumes builtin
• Surface Registration CMFreg
• Surface Toolbox builtin
• SUVFactor Calculator PETDICOMExtension
• Swiss Skull Stripper SwissSkullStripper
• TCIABrowser TCIABrowser
• Thingiverse Browser ThingiverseBrowser
• Threshold Scalar Volume builtin
• Tracker Stabilizer TrackerStabilizer
• Tractography Display builtin
• Tractography Interactive Seeding builtin
• Tractography Label Map Seeding builtin
• Transform Recorder PerkTutor
• Transforms builtin
• Units builtin
• VBRAINSDemon Warp builtin
• Vector To Scalar Volume builtin
• View Controllers builtin
• Volume Clip With Model VolumeClip
• Volume Clip With Roi VolumeClip
• Volume Rendering builtin
• Volumes builtin
• Voting Binary Hole Filling Image Filter builtin
• Welcome builtin
• Window Level Effect WindowLevelEffect
• Workflow Segmentation PerkTutor
• Xnat Slicer XNATSlicer

Modules by category

30 categories:

• BRAINS
  • Label Statistics
• CMF Registration
  • Voxelbase Registration
• Converters
• Developer Tools
  • DICOM Plugins
  • Editor Extensions
  • Matlab
• Diffusion
  • Diffusion Data Conversion
  • Diffusion Tensor Images
  • Diffusion Weighted Images
  • Tractography
• Editor Effects
• Endoscopy
• Examples
• Exporter
• Filtering
  • Arithmetic
  • Denoising
  • Morphology
• IGT
• Informatics
• Legacy
  • Converters
  • Diffusion
    • Denoising
    • Diffusion Data Conversion
  • Filtering
  • Registration
  • Work in Progress
    • Diffusion Tensor
      • Test
• Mesh Generation
• Mesh Generation
• Microscopy
• Multidimensional data
• Multi Volume Support
• Perk Tutor
• Quantification
  • Change Quantification
• Registration
  • Specialized
• Segmentation
  • Specialized
• Slicelets
• Surface Models
• Testing
  • Test Cases
• Unspecified
• Utilities
  • BRAINS
• Wizards
• Work in Progress
  • Converters
  • Informatics
    • Test Cases
• XNATSlicer

BRAINS

LabelStatistics

BRAINSLabel Stats builtin

CMF Registration

Apply Matrix CMFreg Landmark Registration CMFreg Surface Registration CMFreg Label Extraction CMFreg Label Addition CMFreg Downsize CMFreg

Voxelbase Registration

Growing CMFreg Mask Creation CMFreg Non Growing CMFreg

Converters

Vector To Scalar Volume builtin Crop Volume builtin Create DICOMSeries builtin Orient Scalar Volume builtin

Developer Tools

Event Broker Double Arrays builtin Py Dev Remote Debug PyDevRemoteDebug Cameras builtin Extension Wizard builtin Execution Model Tour builtin Image Maker ImageMaker

DICOM Plugins

DICOMRWVMPlugin DICOMLongitudinal PETCTPlugin Multi Volume Importer Plugin DICOMPETSUVPlugin DICOMDiffusion Volume Plugin DICOMSegmentation Plugin DICOMScalar Volume Plugin DICOMSlicer Data Bundle Plugin

Editor Extensions

Binary Watershed Effect IASEM Fast Grow Cut Effect FastGrowCutEffect Carrera Slice Effect CarreraSlice Double Threshold Effect IASEM

Matlab

Matlab Module Generator MatlabBridge Matlab Commander MatlabBridge

Diffusion

Tractography Display builtin DICOM2Full Brain Tractography builtin

Diffusion Data Conversion

DWIConvert builtin

Diffusion Tensor Images

Resample DTIVolume builtin Diffusion Tensor Scalar Measurements builtin Tractography Label Map Seeding builtin Tractography Interactive Seeding builtin

Diffusion Weighted Images

DWIRician LMMSEFilter builtin DWIJoint Rician LMMSEFilter builtin DWITo DTIEstimation builtin Finsler Backtracing FinslerTractography Resample Scalar Vector DWIVolume builtin Finsler Tractography FinslerTractography Diffusion Weighted Volume Masking builtin

Tractography

Fiber Bundle To Label Map builtin Fiber Bundle Label Select builtin

Editor Effects

Window Level Effect WindowLevelEffect

Endoscopy

Endoscopy builtin

Examples

Carrera Slice CarreraSlice Fast Grow Cut FastGrowCutEffect Fast Grow Cut Segmenter CarreraSlice Segmentation Aided Registration SegmentationAidedRegistration

Exporter

Slicer To Kiwi Exporter SlicerToKiwiExporter

Filtering

Extract Skeleton builtin Threshold Scalar Volume builtin N4ITKBias Field Correction builtin Simple Filters builtin Image Label Combine builtin Voting Binary Hole Filling Image Filter builtin Histogram Matching builtin Checker Board Filter builtin

Arithmetic

Multiply Scalar Volumes builtin Add Scalar Volumes builtin Cast Scalar Volume builtin Subtract Scalar Volumes builtin Mask Scalar Volume builtin

Denoising

Gradient Anisotropic Diffusion builtin Median Image Filter builtin Gaussian Blur Image Filter builtin Curvature Anisotropic Diffusion builtin

Morphology

Grayscale Fill Hole Image Filter builtin Erode Label ErodeDilateLabel Dilate Label ErodeDilateLabel Grayscale Grind Peak Image Filter builtin

IGT

Percutaneous Approach Analysis PercutaneousApproachAnalysis Port Placement PortPlacement Open IGTLink IF builtin Needle Finder NeedleFinder Tracker Stabilizer TrackerStabilizer Gyro Guide GyroGuide i Gyne iGyne Corner Annotation CornerAnnotation

Informatics

Annotations builtin Markups builtin Units builtin DICOM builtin Sample Data builtin Subject Hierarchy builtin Data builtin Colors builtin Curve Maker CurveMaker TCIABrowser TCIABrowser

Legacy

Converters

BSpline To Deformation Field builtin

Diffusion

Denoising

DWIUnbiased Non Local Means Filter builtin

Diffusion Data Conversion

DTIimport builtin DTIexport builtin

Filtering

Otsu Threshold Image Filter builtin Resample Scalar Volume builtin

Registration

Test Grid Transform Registration builtin Expert Automated Registration builtin

Work in Progress

Diffusion Tensor

Test

Diffusion Tensor Test builtin

Mesh Generation

Cleaver CLI CleaverExtension

MeshGeneration

Body Centric Cubic Mesh CBC_3D_I2MConversion Mesh Compression CBC_3D_I2MConversion

Microscopy

Bin Shrink IASEM Label Object Statistics IASEM Spacing Aware Curvature Diffusion IASEM IASEMImport Series IASEM IASEMImport IASEM

Multidimensional data

Metafile Importer MultidimData Sequence Browser MultidimData Sequences MultidimData

MultiVolume Support

Multi Volume Explorer builtin Multi Volume Importer builtin

Perk Tutor

Python Metrics Calculator PerkTutor Workflow Segmentation PerkTutor Transform Recorder PerkTutor Perk Evaluator PerkTutor

Quantification

PETStandard Uptake Value Computation builtin SUVFactor Calculator PETDICOMExtension Spinal Curvature Measurement Scoliosis Pk Modeling PkModeling Label Statistics builtin PETSUVImage Maker LongitudinalPETCT Dice Computation DiceComputation Data Probe builtin

ChangeQuantification

Intensity Difference Metric ChangeTracker

Registration

BRAINSResample builtin Transforms builtin BRAINSResize builtin Perform Metric Test builtin BRAINSFit builtin PBNRR PBNRR

Specialized

ACPCTransform builtin Fiducial Registration builtin VBRAINSDemon Warp builtin BRAINSDemon Warp builtin Reformat builtin

Segmentation

Editor builtin EMSegment Quick builtin Simple Region Growing Segmentation builtin EMSegment builtin Volume Clip With Roi VolumeClip Swiss Skull Stripper SwissSkullStripper Airway Segmentation CLI AirwaySegmentation LAScar Segmenter LAScarSegmenter Sobolev Segmenter SobolevSegmenter Volume Clip With Model VolumeClip IGR3D MABMIS Testing MABMIS ABC ABC IGR3D MABMIS Training MABMIS Intensity Segmenter IntensitySegmenter

Specialized

EMSegment Command Line builtin Robust Statistics Segmenter builtin BRAINSROIAuto builtin

Slicelets

Gel Dosimetry Analysis Algo GelDosimetryAnalysis

Surface Models

Model To Label Map builtin Merge Models builtin Surface Toolbox builtin Probe Volume With Model builtin Grayscale Model Maker builtin Label Map Smoothing builtin Model Maker builtin

Testing

Self Tests CLIROITest builtin CLI4Test Threshold Threading Test Scoliosis Monitoring Scoliosis Performance Tests Slicer MRBTest

TestCases

Slice Link Logic builtin Atlas Tests RSNAQuant Tutorial Volume Rendering Scene Close builtin test tractography display Subject Hierarchy Core Plugins Self Test slicer Close Crash Bug2590 Subject Hierarchy Generic Self Test Charting builtin Scene Performance builtin Markups In Compare Viewers Self Test fiber visibility crash2438 scene Import2428 RSNAVis Tutorial JRC2013Vis RSNA2012Prostate Demo Add Many Markups Fiducial Test Neurosurgical Planning Tutorial Markups Self Test Colors Scalar Bar Self Test Markups In Views Self Test Change Tracker Self Test Fiducial Layout Switch Bug1914 View Controllers Slice Interpolation Bug1926 Slicer4Minute builtin label Toggle Bug2049

Unspecified

BRAINSDWICleanup builtin

Utilities

Thingiverse Browser ThingiverseBrowser EMSegment Transform To New Format builtin Data Store builtin

BRAINS

BRAINSTransform Convert builtin

Wizards

Compare Volumes CMFreg Change Tracker ChangeTracker

Work in Progress

Longitudinal PETCT LongitudinalPETCT

Converters

Label To DICOMSEGConverter Reporting

Informatics

Reporting Reporting

TestCases

Reporting Self Test Label To DICOMSEGConverter Self Test

XNATSlicer

Xnat Slicer XNATSlicer

Modules by contributing organization

62 contributing organizations:

• Asclepios INRIA
• AZE R&D
• Brigham and Women's Hospital
• BWH
• BWH, SPL
• BWH, SUMS
• BWH/UAB
• College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China
• CRTC
• gatech
• GE
• Georgia Institute of Technology
• Georgia Tech
• IBM
• Isomics
• Isomics Inc.
• Isomics, Inc.
• Isomics, pieper@isomics.com
• Kitware
• Kitware)
• MGH
• Moka Creative, LLC, kumar.sunil.p@gmail.com
• MSC/NLM
• Noware
• Orobix
• Perk Lab at Queen's University
• Perk Lab, Queen's
• Perk Lab, Queen's University
• PMH
• Queen's
• Queen's University
• Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
• SAIC-Frederick, NCI-Frederick
• SBU
• SCI Institute
• Shiga University of Medical Science, Japan, SPL
• SNR
• SPL
• SPL B&W Harvard
• SPL, BWH
• SPL, BWH, UPenn
• Stony Brook University
• SUMS
• Surgical Planning Lab
• UAB
• Uiowa
• UIowa
• UNC
• Univ of Michigan
• Univ. of Iowa
• University College Cork
• University of Alabama Birmingham
• University of Heidelberg
• University of Iowa
• University of Iowa) and Andrey Fedorov (SPL
• UPenn
• Utah
• UVa
• UWA
• Wash U-St. Louis, dmarcus@wustl.edu
• while at GE

Asclepios INRIA

• PBNRR PBNRR

AZE R&D

• JRC2013Vis

Brigham and Women's Hospital

• Corner Annotation CornerAnnotation
• Surface Toolbox builtin
• test tractography display

BWH

• Add Many Markups Fiducial Test
• Change Tracker Self Test
• Colors Scalar Bar Self Test
• Curve Maker CurveMaker
• Dice Computation DiceComputation
• DICOMRWVMPlugin
• Fast Grow Cut Effect FastGrowCutEffect
• Fiducial Layout Switch Bug1914
• Markups builtin
• Markups In Compare Viewers Self Test
• Markups In Views Self Test
• Neurosurgical Planning Tutorial Markups Self Test
• Segmentation Aided Registration SegmentationAidedRegistration
• Volume Rendering Scene Close builtin
• Window Level Effect WindowLevelEffect

BWH, SPL

• Crop Volume builtin

BWH, SUMS

• Corner Annotation CornerAnnotation

BWH/UAB

• Segmentation Aided Registration SegmentationAidedRegistration

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China

• Gyro Guide GyroGuide

CRTC

• Body Centric Cubic Mesh CBC_3D_I2MConversion
• Mesh Compression CBC_3D_I2MConversion
• PBNRR PBNRR

gatech

• Robust Statistics Segmenter builtin

GE

• Add Scalar Volumes builtin
• Charting builtin
• Checker Board Filter builtin
• Create DICOMSeries builtin
• Curvature Anisotropic Diffusion builtin
• Diffusion Tensor Test builtin
• DWIConvert builtin
• Execution Model Tour builtin
• Gradient Anisotropic Diffusion builtin
• Grayscale Fill Hole Image Filter builtin
• Grayscale Grind Peak Image Filter builtin
• Grayscale Model Maker builtin
• Histogram Matching builtin
• Label Map Smoothing builtin
• Median Image Filter builtin
• Model Maker builtin
• Model To Label Map builtin
• Multiply Scalar Volumes builtin
• Orient Scalar Volume builtin
• Otsu Threshold Image Filter builtin
• Pk Modeling PkModeling
• Resample Scalar Volume builtin
• Simple Region Growing Segmentation builtin
• Slice Link Logic builtin
• Slicer4Minute builtin
• Spacing Aware Curvature Diffusion IASEM
• Subtract Scalar Volumes builtin
• View Controllers builtin
• View Controllers Slice Interpolation Bug1926
• Voting Binary Hole Filling Image Filter builtin

Georgia Institute of Technology

• Carrera Slice Effect CarreraSlice

Georgia Tech

• Carrera Slice CarreraSlice

IBM

• Annotations builtin

Isomics

• Atlas Tests
• Binary Watershed Effect IASEM
• Compare Volumes CMFreg
• Data builtin
• Data Probe builtin
• DICOM builtin
• Editor builtin
• Endoscopy builtin
• fiber visibility crash2438
• Fiber Bundle To Label Map builtin
• Label Statistics builtin
• label Toggle Bug2049
• Landmark Registration CMFreg
• Models builtin
• Performance Tests
• Reporting Reporting
• RSNA2012Prostate Demo
• RSNAQuant Tutorial
• RSNAVis Tutorial
• Sample Data builtin
• scene Import2428
• Self Tests
• Simple Filters builtin
• slicer Close Crash Bug2590
• Slicer To Kiwi Exporter SlicerToKiwiExporter
• Tractography Interactive Seeding builtin
• Transforms builtin
• Vector To Scalar Volume builtin
• View Controllers builtin
• Volume Rendering builtin
• Volumes builtin

Isomics Inc.

• DICOMDiffusion Volume Plugin
• DICOMLongitudinal PETCTPlugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin
• Slicer MRBTest
• Threshold Threading Test

Isomics, Inc.

• Carrera Slice Effect CarreraSlice

Isomics, pieper@isomics.com

• Xnat Slicer XNATSlicer

Kitware

• Cameras builtin
• Colors builtin
• Data builtin
• Data Store builtin
• Double Arrays builtin
• Event Broker
• Expert Automated Registration builtin
• Extension Wizard builtin
• Extract Skeleton builtin
• Fast Grow Cut FastGrowCutEffect
• Fast Grow Cut Segmenter CarreraSlice
• fiber visibility crash2438
• Fiducial Registration builtin
• Gaussian Blur Image Filter builtin
• Image Maker ImageMaker
• label Toggle Bug2049
• Matlab Commander MatlabBridge
• Matlab Module Generator MatlabBridge
• Models builtin
• Multi Volume Explorer builtin
• Multi Volume Importer builtin
• Port Placement PortPlacement
• Reformat builtin
• Sample Data builtin
• Scene Performance builtin
• Simple Filters builtin
• Slicer To Kiwi Exporter SlicerToKiwiExporter
• Threshold Scalar Volume builtin
• Tractography Display builtin
• Transforms builtin
• Units builtin
• View Controllers builtin
• Volume Rendering builtin
• Volumes builtin
• Welcome builtin

Kitware)

• Finsler Backtracing FinslerTractography
• Finsler Tractography FinslerTractography

MGH

• Pk Modeling PkModeling

Moka Creative, LLC, kumar.sunil.p@gmail.com

• Xnat Slicer XNATSlicer

MSC/NLM

• Label Object Statistics IASEM
• Simple Filters builtin

Noware

• Swiss Skull Stripper SwissSkullStripper

Orobix

• Surface Toolbox builtin

PerkLab at Queen's University

• Py Dev Remote Debug PyDevRemoteDebug

PerkLab, Queen's

• Metafile Importer MultidimData
• Sequence Browser MultidimData
• Sequences MultidimData
• Transforms builtin

PerkLab, Queen's University

• Matlab Commander MatlabBridge
• Matlab Module Generator MatlabBridge
• Volume Clip With Model VolumeClip

PMH

• Colors Scalar Bar Self Test
• Sequence Browser MultidimData
• Sequences MultidimData

Queen's

• Data builtin
• Gel Dosimetry Analysis Algo GelDosimetryAnalysis
• Subject Hierarchy builtin
• Subject Hierarchy Core Plugins Self Test
• Subject Hierarchy Generic Self Test

Queen's University

• Perk Evaluator PerkTutor
• Python Metrics Calculator PerkTutor
• Scoliosis Monitoring Scoliosis
• Spinal Curvature Measurement Scoliosis
• Transform Recorder PerkTutor
• Volume Clip With Roi VolumeClip
• Workflow Segmentation PerkTutor

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

• Matlab Commander MatlabBridge
• Matlab Module Generator MatlabBridge

SAIC-Frederick, NCI-Frederick

• Volume Rendering builtin

SBU

• LAScar Segmenter LAScarSegmenter

SCI Institute

• Cleaver CLI CleaverExtension

Shiga University of Medical Science, Japan, SPL

• Percutaneous Approach Analysis PercutaneousApproachAnalysis

SNR

• Tracker Stabilizer TrackerStabilizer

SPL

• DICOM2Full Brain Tractography builtin
• Label To DICOMSEGConverter Self Test
• Percutaneous Approach Analysis PercutaneousApproachAnalysis
• Pk Modeling PkModeling
• Reporting Self Test
• Tracker Stabilizer TrackerStabilizer

SPL B&W Harvard

• PBNRR PBNRR

SPL, BWH

• ACPCTransform builtin
• Annotations builtin
• BSpline To Deformation Field builtin
• Cast Scalar Volume builtin
• Colors builtin
• Data builtin
• Diffusion Tensor Scalar Measurements builtin
• Diffusion Weighted Volume Masking builtin
• DTIexport builtin
• DTIimport builtin
• DWITo DTIEstimation builtin
• Fiducial Registration builtin
• Grayscale Model Maker builtin
• Image Label Combine builtin
• Mask Scalar Volume builtin
• Merge Models builtin
• Model Maker builtin
• Models builtin
• Model To Label Map builtin
• Multi Volume Explorer builtin
• Multi Volume Importer builtin
• N4ITKBias Field Correction builtin
• PETStandard Uptake Value Computation builtin
• PETSUVImage Maker LongitudinalPETCT
• Probe Volume With Model builtin
• Reporting Reporting
• Robust Statistics Segmenter builtin
• Scene Views builtin
• SUVFactor Calculator PETDICOMExtension
• TCIABrowser TCIABrowser
• Test Grid Transform Registration builtin
• Threshold Scalar Volume builtin
• Tractography Label Map Seeding builtin
• View Controllers builtin
• Volume Rendering builtin
• Volumes builtin
• Welcome builtin

SPL, BWH, UPenn

• Merge Models builtin

Stony Brook University

• Carrera Slice Effect CarreraSlice
• Fast Grow Cut Effect FastGrowCutEffect

SUMS

• Corner Annotation CornerAnnotation

Surgical Planning Lab

• Label To DICOMSEGConverter Reporting

UAB

• LAScar Segmenter LAScarSegmenter
• Segmentation Aided Registration SegmentationAidedRegistration
• Sobolev Segmenter SobolevSegmenter

Uiowa

• DWIConvert builtin

UIowa

• DWIConvert builtin

UNC

• DWIRician LMMSEFilter builtin
• Extract Skeleton builtin
• Intensity Segmenter IntensitySegmenter
• Port Placement PortPlacement
• Resample DTIVolume builtin
• Resample Scalar Vector DWIVolume builtin

Univ of Michigan

• Surface Registration CMFreg

Univ. of Iowa

• DICOMPETSUVPlugin
• DICOMRWVMPlugin

University College Cork

• Airway Segmentation CLI AirwaySegmentation

University of Alabama Birmingham

• Carrera Slice Effect CarreraSlice
• Fast Grow Cut Effect FastGrowCutEffect

University of Heidelberg

• Longitudinal PETCT LongitudinalPETCT

University of Iowa

• PETSUVImage Maker LongitudinalPETCT
• SUVFactor Calculator PETDICOMExtension

University of Iowa) and Andrey Fedorov (SPL

• Longitudinal PETCT LongitudinalPETCT

UPenn

• Annotations builtin
• EMSegment builtin
• N4ITKBias Field Correction builtin
• Scene Views builtin

Utah

• Label Map Smoothing builtin
• LAScar Segmenter LAScarSegmenter
• Segmentation Aided Registration SegmentationAidedRegistration

UVa

• DWIJoint Rician LMMSEFilter builtin
• DWIRician LMMSEFilter builtin
• DWIUnbiased Non Local Means Filter builtin

UWA

• Thingiverse Browser ThingiverseBrowser

WashU-St. Louis, dmarcus@wustl.edu

• Xnat Slicer XNATSlicer

while at GE

• Pk Modeling PkModeling

Modules by contributing individual

163 contributing individuals:

• Alex Yarmarkovich
• Ali Ghayoor
• Allen Tannenbaum
• and Hans Johnson.
• Beatriz Paniagua from Department of Orthodontics
• Brad Davis
• BWH
• Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez
• Daniel Haehn
• Demian Wassermann
• Dinggang Shen
• Francois Budin
• Greg Harris
• hans-johnson -at- uiowa.edu
• http://www.psychiatry.uiowa.edu
• Ivan Kolesov
• Kilian Pohl
• Lauren O'Donnell
• Liangjia Zhu
• Luping Fang
• Matt Lougheed
• Neuro Image Resarch and Analysis Laboratory
• Patricio Vela
• Peter Karasev
• Peter Savadjiev
• Polina Golland
• Qing Pan
• the University of North Carolina at Chapel Hill
• UNC Medical School
• Uof M School of Dentistry
• Uof M School Of Dentistry
• Xiaofeng Liu
• Yumin Yuan
• Akila Viswanathan
• Alan Morris
• Alex Yarmakovich
• Alex Yarmarkovich
• Ali Ghayoor
• Alireza Mehrtash
• Allen Tannenbaum
• and Ron Kikinis
• and Steve Pieper
• Andinet Enquobahrie
• Andras Lasso
• Andreas Freudling
• Andrey Fedorov
• Andriy Kot
• Anonymous
• Antonio Damato
• Antonio Tristan Vega
• Arie Nakhmani
• Atsushi Yamada
• Benjamin Long
• Bill Lorensen
• Bradley Lowekamp
• Bradley Lowekamp and Bill Lorensen
• Casey B Goodlett
• Charles Marion
• Csaba Pinter
• Dan Marcus
• Daniel Blezek
• Daniel Haehn
• Danny Perry
• Demian Wassermann
• Dirk Padfield
• Dominik Meier
• Ethan Ulrich
• Fotis Drakopoulos
• Francois Budin
• Franklin King
• Greg Gardner
• Guido Gerig
• Guillaume Pernelle
• Hans J. Johnson
• Hans Johnson
• Ivan Kolesov
• Jan Egger
• Jayender Jagadeesan
• Jean-Baptiste Berger
• Jean-Christophe Fillion-Robin
• Jim Miller
• Johan Andruejol
• John Evans
• Jonathan Bronson
• Josh Cates
• Joy Matsui
• Julien Finet
• Julien Jomier
• Junichi Tokuda
• Kent Williams
• Kevin Wang
• Kilian Pohl
• Koichiro Murakami
• Lauren Barber
• Lauren O'Donnell
• Laurent Chauvin
• Liang-Jia Zhu
• Liangjia Zhu
• Luca Antiga
• Luis G. Torres
• Marc Niethammer
• Marcel Prastawa prastawa@sci.utah.edu
• Mark Scully
• Markus Van Tol
• Martin Styner
• Matthew Holden
• Matthew S. Holden
• Matthew Woehlke
• Michael Jeulin-Lagarrigue
• Minjeong Kim
• Nabgha Fahrat
• Nicholas Herlambang
• Nick Tustison
• Nicole Aucoin
• Nigel Goh
• Nikos Chrisochoides
• Olivier Clatz
• Pat Marion
• Paul Mercea
• Pengdong Xiao
• Peter Black
• Peter Karasev
• Pierre Seroul
• Pietro Nardelli
• Raul San Jose
• Rob Mac Leod
• Ron Kikinis
• Ross Whitaker
• Ruifeng Chen
• Sam Song
• Sandy Wells
• Santiago Aja Fernandez
• Sebastien Barré
• Sebastien Barre
• Shigeyuki Naka
• Soichiro Tani
• Sonia Pujol
• Stephen Aylward
• Stephen R Aylward
• Steve Pieper
• Sunil Kumar
• Sylvain Bouix
• Tamas Ungi
• This tool was developed by Hans J. Johnson and Greg Harris.
• This tool was developed by Hans Johnson.
• This tool was developed by Kent Williams.
• This tool was developed by Vincent Magnotta
• Tina Kapur
• Tobias Penzkofer
• Tohru Tani
• Vince Magnotta
• Vincent A. Magnotta
• Vinicius Boen
• Vinicius Boen and Mason Winsauer
• Wendy Plesniak
• Xiaodong Tao
• Xiaojun Chen
• Yanling Liu
• Yi Gao
• Yinglin Lee
• Yingxuan Zhu
• Yixun Liu
• Yong Zhang

Alex Yarmarkovich

• Finsler Backtracing FinslerTractography
• Finsler Tractography FinslerTractography

Ali Ghayoor

• BRAINSTransform Convert builtin

Allen Tannenbaum

• Carrera Slice Effect CarreraSlice
• Fast Grow Cut Effect FastGrowCutEffect

and Hans Johnson.

• BRAINSResample builtin

Beatriz Paniagua from Department of Orthodontics

• Intensity Segmenter IntensitySegmenter

Brad Davis

• EMSegment Command Line builtin

BWH

• DICOMSegmentation Plugin
• Multi Volume Importer Plugin

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

• Finsler Backtracing FinslerTractography
• Finsler Tractography FinslerTractography

Daniel Haehn

• EMSegment Command Line builtin

Demian Wassermann

• Finsler Backtracing FinslerTractography
• Finsler Tractography FinslerTractography

Dinggang Shen

• IGR3D MABMIS Testing MABMIS
• IGR3D MABMIS Training MABMIS

Francois Budin

• Intensity Segmenter IntensitySegmenter

Greg Harris

• BRAINSResample builtin

hans-johnson -at- uiowa.edu

• BRAINSFit builtin
• BRAINSROIAuto builtin

http://www.psychiatry.uiowa.edu

• BRAINSFit builtin
• BRAINSROIAuto builtin

Ivan Kolesov

• Fast Grow Cut Effect FastGrowCutEffect

Kilian Pohl

• EMSegment builtin
• EMSegment Command Line builtin

Lauren O'Donnell

• Fiber Bundle Label Select builtin

Liangjia Zhu

• Carrera Slice Effect CarreraSlice

Luping Fang

• Gyro Guide GyroGuide

Matt Lougheed

• Volume Clip With Model VolumeClip

Neuro Image Resarch and Analysis Laboratory

• Apply Matrix CMFreg
• Downsize CMFreg
• Growing CMFreg
• Label Addition CMFreg
• Label Extraction CMFreg
• Mask Creation CMFreg
• Non Growing CMFreg

Patricio Vela

• Carrera Slice Effect CarreraSlice

Peter Karasev

• Carrera Slice CarreraSlice

Peter Savadjiev

• Finsler Backtracing FinslerTractography
• Finsler Tractography FinslerTractography

Polina Golland

• EMSegment Command Line builtin

Qing Pan

• Gyro Guide GyroGuide

the University of North Carolina at Chapel Hill

• Intensity Segmenter IntensitySegmenter

UNC Medical School

• Apply Matrix CMFreg
• Downsize CMFreg
• Growing CMFreg
• Label Addition CMFreg
• Label Extraction CMFreg
• Mask Creation CMFreg
• Non Growing CMFreg

UofM School of Dentistry

• Apply Matrix CMFreg
• Downsize CMFreg
• Label Addition CMFreg
• Label Extraction CMFreg
• Mask Creation CMFreg
• Non Growing CMFreg

UofM School Of Dentistry

• Growing CMFreg

Xiaofeng Liu

• IGR3D MABMIS Testing MABMIS
• IGR3D MABMIS Training MABMIS

Yumin Yuan

• EMSegment Command Line builtin

Akila Viswanathan

• i Gyne iGyne
• Needle Finder NeedleFinder

Alan Morris

• LAScar Segmenter LAScarSegmenter
• Segmentation Aided Registration SegmentationAidedRegistration

Alex Yarmakovich

• Models builtin
• Tractography Interactive Seeding builtin

Alex Yarmarkovich

• Data builtin
• Image Label Combine builtin
• Transforms builtin
• Volume Rendering builtin
• Volumes builtin

Ali Ghayoor

• Perform Metric Test builtin

Alireza Mehrtash

• i Gyne iGyne
• Needle Finder NeedleFinder
• TCIABrowser TCIABrowser

Allen Tannenbaum

• LAScar Segmenter LAScarSegmenter
• Robust Statistics Segmenter builtin
• Segmentation Aided Registration SegmentationAidedRegistration
• Sobolev Segmenter SobolevSegmenter

and Ron Kikinis

• Fast Grow Cut Effect FastGrowCutEffect

and Steve Pieper

• Carrera Slice Effect CarreraSlice

Andinet Enquobahrie

• Port Placement PortPlacement

Andras Lasso

• Matlab Commander MatlabBridge
• Matlab Module Generator MatlabBridge
• Metafile Importer MultidimData
• Py Dev Remote Debug PyDevRemoteDebug
• Sequence Browser MultidimData
• Sequences MultidimData
• Transforms builtin
• Volume Clip With Model VolumeClip
• Volume Clip With Roi VolumeClip

Andreas Freudling

• Volume Rendering builtin

Andrey Fedorov

• Body Centric Cubic Mesh CBC_3D_I2MConversion
• BSpline To Deformation Field builtin
• Change Tracker ChangeTracker
• Change Tracker Self Test
• Crop Volume builtin
• DICOMRWVMPlugin
• DICOMSegmentation Plugin
• Intensity Difference Metric ChangeTracker
• Label To DICOMSEGConverter Reporting
• Label To DICOMSEGConverter Self Test
• Mesh Compression CBC_3D_I2MConversion
• Multi Volume Explorer builtin
• Multi Volume Importer builtin
• Multi Volume Importer Plugin
• N4ITKBias Field Correction builtin
• PBNRR PBNRR
• Pk Modeling PkModeling
• Reporting Reporting
• Reporting Self Test
• SUVFactor Calculator PETDICOMExtension
• TCIABrowser TCIABrowser
• Window Level Effect WindowLevelEffect

Andriy Kot

• PBNRR PBNRR

Anonymous

• CLIROITest builtin
• EMSegment Transform To New Format builtin

Antonio Damato

• i Gyne iGyne
• Needle Finder NeedleFinder

Antonio Tristan Vega

• DWIJoint Rician LMMSEFilter builtin
• DWIRician LMMSEFilter builtin
• DWIUnbiased Non Local Means Filter builtin
• Finsler Backtracing FinslerTractography
• Finsler Tractography FinslerTractography

Arie Nakhmani

• Sobolev Segmenter SobolevSegmenter

Atsushi Yamada

• Corner Annotation CornerAnnotation

Benjamin Long

• Sample Data builtin

Bill Lorensen

• Add Scalar Volumes builtin
• Checker Board Filter builtin
• Create DICOMSeries builtin
• Curvature Anisotropic Diffusion builtin
• Diffusion Tensor Test builtin
• Execution Model Tour builtin
• Gradient Anisotropic Diffusion builtin
• Grayscale Fill Hole Image Filter builtin
• Grayscale Grind Peak Image Filter builtin
• Grayscale Model Maker builtin
• Histogram Matching builtin
• Median Image Filter builtin
• Model Maker builtin
• Multiply Scalar Volumes builtin
• Orient Scalar Volume builtin
• Otsu Threshold Image Filter builtin
• Resample Scalar Volume builtin
• Subtract Scalar Volumes builtin
• Swiss Skull Stripper SwissSkullStripper
• Voting Binary Hole Filling Image Filter builtin

Bradley Lowekamp

• Bin Shrink IASEM
• Double Threshold Effect IASEM
• IASEMImport IASEM
• IASEMImport Series IASEM
• Label Object Statistics IASEM
• Simple Filters builtin

Bradley Lowekamp and Bill Lorensen

• Spacing Aware Curvature Diffusion IASEM

Casey B Goodlett

• Expert Automated Registration builtin
• Fiducial Registration builtin

Charles Marion

• Data Store builtin

Csaba Pinter

• Data builtin
• Gel Dosimetry Analysis Algo GelDosimetryAnalysis
• Subject Hierarchy builtin
• Subject Hierarchy Core Plugins Self Test
• Subject Hierarchy Generic Self Test

Dan Marcus

• Xnat Slicer XNATSlicer

Daniel Blezek

• Execution Model Tour builtin

Daniel Haehn

• Annotations builtin
• EMSegment builtin
• Merge Models builtin
• Scene Views builtin

Danny Perry

• LAScar Segmenter LAScarSegmenter
• Segmentation Aided Registration SegmentationAidedRegistration

Demian Wassermann

• DICOM2Full Brain Tractography builtin
• Diffusion Weighted Volume Masking builtin
• Fiber Bundle Label Select builtin
• test tractography display
• Tractography Label Map Seeding builtin

Dirk Padfield

• Label Map Smoothing builtin

Dominik Meier

• Fiducial Registration builtin

Ethan Ulrich

• DICOMPETSUVPlugin
• DICOMRWVMPlugin
• SUVFactor Calculator PETDICOMExtension

Fotis Drakopoulos

• Body Centric Cubic Mesh CBC_3D_I2MConversion
• Mesh Compression CBC_3D_I2MConversion
• PBNRR PBNRR

Francois Budin

• Resample DTIVolume builtin
• Resample Scalar Vector DWIVolume builtin

Franklin King

• Scoliosis Monitoring Scoliosis
• Spinal Curvature Measurement Scoliosis
• Transforms builtin

Greg Gardner

• LAScar Segmenter LAScarSegmenter
• Segmentation Aided Registration SegmentationAidedRegistration

Guido Gerig

• Extract Skeleton builtin

Guillaume Pernelle

• i Gyne iGyne
• Needle Finder NeedleFinder

Hans J. Johnson

• BRAINSFit builtin
• BRAINSROIAuto builtin
• BRAINSTransform Convert builtin

Hans Johnson

• DWIConvert builtin
• PETSUVImage Maker LongitudinalPETCT
• SUVFactor Calculator PETDICOMExtension

Ivan Kolesov

• Carrera Slice CarreraSlice
• Carrera Slice Effect CarreraSlice

Jan Egger

• i Gyne iGyne

Jayender Jagadeesan

• Tracker Stabilizer TrackerStabilizer

Jean-Baptiste Berger

• Data Store builtin

Jean-Christophe Fillion-Robin

• CLI4Test
• Data Store builtin
• Fast Grow Cut FastGrowCutEffect
• Fast Grow Cut Segmenter CarreraSlice
• fiber visibility crash2438
• label Toggle Bug2049
• Matlab Commander MatlabBridge
• Matlab Module Generator MatlabBridge
• Multi Volume Explorer builtin
• Multi Volume Importer builtin
• Sample Data builtin
• Simple Filters builtin
• Slicer To Kiwi Exporter SlicerToKiwiExporter
• Transforms builtin
• View Controllers builtin
• Welcome builtin

Jim Miller

• Charting builtin
• Pk Modeling PkModeling
• Simple Region Growing Segmentation builtin
• Slice Link Logic builtin
• Slicer4Minute builtin
• View Controllers builtin
• View Controllers Slice Interpolation Bug1926

Johan Andruejol

• Units builtin

John Evans

• Pk Modeling PkModeling

Jonathan Bronson

• Cleaver CLI CleaverExtension

Josh Cates

• Label Map Smoothing builtin
• LAScar Segmenter LAScarSegmenter
• Segmentation Aided Registration SegmentationAidedRegistration

Joy Matsui

• DWIConvert builtin

Julien Finet

• Cameras builtin
• Colors builtin
• Data builtin
• Double Arrays builtin
• Event Broker
• Image Maker ImageMaker
• Models builtin
• Multi Volume Explorer builtin
• Multi Volume Importer builtin
• Scene Performance builtin
• Threshold Scalar Volume builtin
• Tractography Display builtin
• Transforms builtin
• Units builtin
• Volume Rendering builtin
• Volumes builtin

Julien Jomier

• Gaussian Blur Image Filter builtin

Junichi Tokuda

• Corner Annotation CornerAnnotation
• Curve Maker CurveMaker
• Dilate Label ErodeDilateLabel
• Erode Label ErodeDilateLabel
• Percutaneous Approach Analysis PercutaneousApproachAnalysis

Kent Williams

• BRAINSTransform Convert builtin
• DWIConvert builtin

Kevin Wang

• Colors Scalar Bar Self Test
• Matlab Commander MatlabBridge
• Matlab Module Generator MatlabBridge
• Sequence Browser MultidimData
• Sequences MultidimData

Kilian Pohl

• Annotations builtin
• Change Tracker ChangeTracker
• Scene Views builtin

Koichiro Murakami

• Corner Annotation CornerAnnotation
• Percutaneous Approach Analysis PercutaneousApproachAnalysis

Lauren Barber

• i Gyne iGyne
• Needle Finder NeedleFinder

Lauren O'Donnell

• Probe Volume With Model builtin

Laurent Chauvin

• Curve Maker CurveMaker
• Dice Computation DiceComputation
• Percutaneous Approach Analysis PercutaneousApproachAnalysis
• Tracker Stabilizer TrackerStabilizer

Liang-Jia Zhu

• Segmentation Aided Registration SegmentationAidedRegistration

Liangjia Zhu

• Fast Grow Cut Effect FastGrowCutEffect
• LAScar Segmenter LAScarSegmenter

Luca Antiga

• Surface Toolbox builtin

Luis G. Torres

• Port Placement PortPlacement

Marc Niethammer

• DWIRician LMMSEFilter builtin

Marcel Prastawa prastawa@sci.utah.edu

• ABC ABC

Mark Scully

• DWIConvert builtin

Markus Van Tol

• Longitudinal PETCT LongitudinalPETCT
• PETSUVImage Maker LongitudinalPETCT
• SUVFactor Calculator PETDICOMExtension

Martin Styner

• Extract Skeleton builtin

Matthew Holden

• Metafile Importer MultidimData
• Python Metrics Calculator PerkTutor
• Sequence Browser MultidimData
• Sequences MultidimData

Matthew S. Holden

• Perk Evaluator PerkTutor
• Transform Recorder PerkTutor
• Workflow Segmentation PerkTutor

Matthew Woehlke

• Extension Wizard builtin

Michael Jeulin-Lagarrigue

• Reformat builtin

Minjeong Kim

• IGR3D MABMIS Testing MABMIS
• IGR3D MABMIS Training MABMIS

Nabgha Fahrat

• i Gyne iGyne
• Needle Finder NeedleFinder

Nicholas Herlambang

• JRC2013Vis

Nick Tustison

• N4ITKBias Field Correction builtin

Nicole Aucoin

• ACPCTransform builtin
• Add Many Markups Fiducial Test
• Annotations builtin
• Cast Scalar Volume builtin
• Colors builtin
• Colors Scalar Bar Self Test
• Data builtin
• Fiducial Layout Switch Bug1914
• Grayscale Model Maker builtin
• Markups builtin
• Markups In Compare Viewers Self Test
• Markups In Views Self Test
• Mask Scalar Volume builtin
• Merge Models builtin
• Model Maker builtin
• Models builtin
• Model To Label Map builtin
• Neurosurgical Planning Tutorial Markups Self Test
• PETStandard Uptake Value Computation builtin
• PETSUVImage Maker LongitudinalPETCT
• Reporting Reporting
• Scene Views builtin
• SUVFactor Calculator PETDICOMExtension
• Threshold Scalar Volume builtin
• Volume Rendering Scene Close builtin
• Volumes builtin

Nigel Goh

• Thingiverse Browser ThingiverseBrowser

Nikos Chrisochoides

• Body Centric Cubic Mesh CBC_3D_I2MConversion
• Mesh Compression CBC_3D_I2MConversion
• PBNRR PBNRR

Olivier Clatz

• PBNRR PBNRR

Pat Marion

• Slicer To Kiwi Exporter SlicerToKiwiExporter

Paul Mercea

• Longitudinal PETCT LongitudinalPETCT

Pengdong Xiao

• Intensity Segmenter IntensitySegmenter

Peter Black

• Change Tracker ChangeTracker

Peter Karasev

• Carrera Slice Effect CarreraSlice

Pierre Seroul

• Extract Skeleton builtin

Pietro Nardelli

• Airway Segmentation CLI AirwaySegmentation

Raul San Jose

• Diffusion Tensor Scalar Measurements builtin
• DWITo DTIEstimation builtin
• Tractography Label Map Seeding builtin

Rob MacLeod

• LAScar Segmenter LAScarSegmenter
• Segmentation Aided Registration SegmentationAidedRegistration

Ron Kikinis

• ACPCTransform builtin
• Cast Scalar Volume builtin
• Change Tracker ChangeTracker
• Crop Volume builtin
• Mask Scalar Volume builtin
• Merge Models builtin
• Model Maker builtin
• Multi Volume Explorer builtin
• Multi Volume Importer builtin
• N4ITKBias Field Correction builtin
• PETStandard Uptake Value Computation builtin
• PETSUVImage Maker LongitudinalPETCT
• Robust Statistics Segmenter builtin
• Surface Toolbox builtin
• SUVFactor Calculator PETDICOMExtension
• Threshold Scalar Volume builtin
• View Controllers builtin
• Volume Rendering builtin

Ross Whitaker

• Label Map Smoothing builtin

Ruifeng Chen

• Gyro Guide GyroGuide

Sam Song

• i Gyne iGyne

Sandy Wells

• i Gyne iGyne
• Needle Finder NeedleFinder

Santiago Aja Fernandez

• DWIJoint Rician LMMSEFilter builtin
• DWIRician LMMSEFilter builtin
• DWIUnbiased Non Local Means Filter builtin

Sebastien Barré

• Cameras builtin

Sebastien Barre

• EMSegment Command Line builtin

Shigeyuki Naka

• Corner Annotation CornerAnnotation

Soichiro Tani

• Corner Annotation CornerAnnotation

Sonia Pujol

• Dice Computation DiceComputation
• DTIexport builtin
• DTIimport builtin

Stephen Aylward

• Extract Skeleton builtin
• Gaussian Blur Image Filter builtin

Stephen R Aylward

• Expert Automated Registration builtin

Steve Pieper

• Atlas Tests
• Binary Watershed Effect IASEM
• Compare Volumes CMFreg
• Data Probe builtin
• DICOM builtin
• DICOMDiffusion Volume Plugin
• DICOMLongitudinal PETCTPlugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin
• Editor builtin
• Endoscopy builtin
• fiber visibility crash2438
• Fiber Bundle To Label Map builtin
• Label Statistics builtin
• label Toggle Bug2049
• Landmark Registration CMFreg
• Multi Volume Explorer builtin
• Multi Volume Importer builtin
• Performance Tests
• Reporting Reporting
• RSNA2012Prostate Demo
• RSNAQuant Tutorial
• RSNAVis Tutorial
• Sample Data builtin
• scene Import2428
• Self Tests
• Simple Filters builtin
• slicer Close Crash Bug2590
• Slicer MRBTest
• Slicer To Kiwi Exporter SlicerToKiwiExporter
• Threshold Threading Test
• Vector To Scalar Volume builtin
• View Controllers builtin
• Volumes builtin
• Xnat Slicer XNATSlicer

Sunil Kumar

• Xnat Slicer XNATSlicer

Sylvain Bouix

• Segmentation Aided Registration SegmentationAidedRegistration

Tamas Ungi

• Perk Evaluator PerkTutor
• Python Metrics Calculator PerkTutor
• Scoliosis Monitoring Scoliosis
• Spinal Curvature Measurement Scoliosis
• Transform Recorder PerkTutor
• Workflow Segmentation PerkTutor

This tool was developed by Hans J. Johnson and Greg Harris.

• BRAINSDemon Warp builtin
• VBRAINSDemon Warp builtin

This tool was developed by Hans Johnson.

• BRAINSResize builtin

This tool was developed by Kent Williams.

• BRAINSDWICleanup builtin

This tool was developed by Vincent Magnotta

• BRAINSResample builtin

Tina Kapur

• i Gyne iGyne
• Needle Finder NeedleFinder

Tobias Penzkofer

• i Gyne iGyne

Tohru Tani

• Corner Annotation CornerAnnotation

Vince Magnotta

• DWIConvert builtin

Vincent A. Magnotta

• BRAINSLabel Stats builtin

Vinicius Boen

• Surface Registration CMFreg

Vinicius Boen and Mason Winsauer

• Apply Matrix CMFreg
• Downsize CMFreg
• Growing CMFreg
• Label Addition CMFreg
• Label Extraction CMFreg
• Mask Creation CMFreg
• Non Growing CMFreg

Wendy Plesniak

• Annotations builtin
• PETStandard Uptake Value Computation builtin
• PETSUVImage Maker LongitudinalPETCT
• Scene Views builtin
• SUVFactor Calculator PETDICOMExtension
• View Controllers builtin
• Welcome builtin

Xiaodong Tao

• DWIConvert builtin
• Model To Label Map builtin

Xiaojun Chen

• i Gyne iGyne

Yanling Liu

• Volume Rendering builtin

Yi Gao

• Carrera Slice Effect CarreraSlice
• Fast Grow Cut Effect FastGrowCutEffect
• i Gyne iGyne
• LAScar Segmenter LAScarSegmenter
• Needle Finder NeedleFinder
• Robust Statistics Segmenter builtin
• Segmentation Aided Registration SegmentationAidedRegistration

Yinglin Lee

• Test Grid Transform Registration builtin

Yingxuan Zhu

• Pk Modeling PkModeling

Yixun Liu

• Body Centric Cubic Mesh CBC_3D_I2MConversion
• Mesh Compression CBC_3D_I2MConversion
• PBNRR PBNRR

Yong Zhang

• Annotations builtin

Extensions by name

67 extensions:

• ABC
• Airway Segmentation
• Cardiac MRI Toolkit
• Cardiac Agaston Measures
• Carrera Slice
• CBC 3D I2MConversion
• Change Tracker
• Cleaver Extension
• CMFreg
• Corner Annotation
• Curve Maker
• Dice Computation
• DTIAtlas Builder
• DTIAtlas Fiber Analyzer
• DTIPrep
• DTIProcess
• Erode Dilate Label
• Faceted Visualizer
• Fast Grow Cut Effect
• Fiber Viewer Light
• Finsler Tractography
• Gel Dosimetry Analysis
• Gyro Guide
• hough Transform CLI
• IASEM
• i Gyne
• Image Maker
• Intensity Segmenter
• LAScar Segmenter
• LASegmenter
• Light Weight Robot IGT
• Longitudinal PETCT
• MABMIS
• Matlab Bridge
• Model Clip
• Model To Model Distance
• Multidim Data
• Needle Finder
• Open CAD
• PBNRR
• Percutaneous Approach Analysis
• Perk Tutor
• PETDICOMExtension
• Pk Modeling
• Port Placement
• Py Dev Remote Debug
• Reporting
• Resection Planner
• RSSExtension
• Scoliosis
• Segmentation Aided Registration
• Shape Population Viewer
• Skull Stripper
• VMTK
• Slicer IGT
• Slicer RT
• Slicer To Kiwi Exporter
• Sobolev Segmenter
• SPHARM-PDM
• Swiss Skull Stripper
• TCIABrowser
• Thingiverse Browser
• Tracker Stabilizer
• UKFTractography
• Volume Clip
• Window Level Effect
• XNATSlicer

Extensions by category

26 categories:

• Cardiac
• Cardiac MRI toolkit
• Converters
• Developer Tools
• Diffusion
• Editor Effects
• Exporter
• Filtering
  • Morphology
• IGT
• Informatics
• Mesh Generation
• Microscopy
• Multidimensional data
• Quantification
• Radiotherapy
• Registration
• Remote
• Scoliosis
• Segmentation
• Shape Analysis
• Surface Models
• Tractography
• Training
• Utilities
• Vascular Modeling Toolkit
• Wizards

Cardiac

Cardiac Agaston Measures

Cardiac MRI toolkit

Cardiac MRI Toolkit

Converters

PETDICOMExtension

Developer Tools

Image Maker Py Dev Remote Debug Matlab Bridge

Diffusion

DTIAtlas Builder DTIProcess Fiber Viewer Light DTIAtlas Fiber Analyzer DTIPrep

Editor Effects

Window Level Effect

Exporter

Slicer To Kiwi Exporter

Filtering

Morphology

Erode Dilate Label

IGT

Port Placement Light Weight Robot IGT Gyro Guide Corner Annotation i Gyne Slicer IGT Percutaneous Approach Analysis Needle Finder Tracker Stabilizer Resection Planner

Informatics

Reporting Longitudinal PETCT Faceted Visualizer TCIABrowser Curve Maker

Mesh Generation

CBC 3D I2MConversion Cleaver Extension

Microscopy

IASEM

Multidimensional data

Multidim Data

Quantification

Dice Computation Pk Modeling

Radiotherapy

Slicer RT Gel Dosimetry Analysis

Registration

CMFreg Segmentation Aided Registration PBNRR

Remote

XNATSlicer

Scoliosis

Scoliosis

Segmentation

Open CAD Swiss Skull Stripper Carrera Slice Skull Stripper Airway Segmentation hough Transform CLI LAScar Segmenter RSSExtension ABC MABMIS Sobolev Segmenter LASegmenter Fast Grow Cut Effect Intensity Segmenter Volume Clip

Shape Analysis

Model To Model Distance Shape Population Viewer SPHARM-PDM

Surface Models

Model Clip

Tractography

Finsler Tractography UKFTractography

Training

Perk Tutor

Utilities

Thingiverse Browser

Vascular Modeling Toolkit

VMTK

Wizards

Change Tracker

Extensions by contributing organization

54 contributing organizations:

• Asclepios INRIA) and Nikos Chrisochoides (CRTC
• Boston Childrens Hospital
• Brigham and Women's Hospital
• BWH
• BWH & MGH
• BWH, SPL
• BWH/UAB
• CARMA
• College of Information Engineering, Zhejiang University of Technology, Hangzhou, China
• Crisalix
• CRTC
• Department of Neurosurgery, PLA General Hospital, Beijing, China
• Department of Orthodontics, UNC
• GE
• GE GLobal Research
• GT
• Isomics
• Kitware
• LUH
• Massachusetts General Hospital
• Moka Creative LLC, Washington University in St. Louis
• NIRAL, UNC
• Noware
• Orobix
• Perk Lab at Queen's University
• Perk Lab, Queen's
• Perk Lab, Queen's University
• PMH
• Queen's University
• Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
• SBU
• SCI Institute
• Shiga University of Medical Science, Japan
• Shiga University of Medical Science, Japan, SPL
• SPL
• SPL and BWH
• SPL B&W Harvard
• SRI
• Stony Brook University
• Surgical Planning Lab
• UAB
• UIowa
• UNC
• Univ of Michigan
• University College Cork
• University of Bern
• University of Heidelberg
• University of Iowa
• University of Utah
• Utah
• UWA
• Washington University in St. Louis
• yogesh@bwh.harvard.edu

Asclepios INRIA) and Nikos Chrisochoides (CRTC

• PBNRR

Boston Childrens Hospital

• VMTK

Brigham and Women's Hospital

• Erode Dilate Label
• Slicer IGT

BWH

• Change Tracker
• Curve Maker
• Dice Computation
• Fast Grow Cut Effect
• Light Weight Robot IGT
• Open CAD
• Pk Modeling
• RSSExtension
• Segmentation Aided Registration
• Tracker Stabilizer

BWH & MGH

• Carrera Slice

BWH, SPL

• PETDICOMExtension

BWH/UAB

• Segmentation Aided Registration

CARMA

• Cardiac MRI Toolkit

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China

• Gyro Guide

Crisalix

• Swiss Skull Stripper

CRTC

• CBC 3D I2MConversion
• PBNRR

Department of Neurosurgery, PLA General Hospital, Beijing, China

• Gyro Guide

Department of Orthodontics, UNC

• Intensity Segmenter

GE

• Faceted Visualizer
• Pk Modeling
• Skull Stripper

GE GLobal Research

• MABMIS

GT

• Carrera Slice

Isomics

• Carrera Slice
• Finsler Tractography
• VMTK
• Slicer To Kiwi Exporter
• XNATSlicer

Kitware

• Change Tracker
• Image Maker
• Matlab Bridge
• Port Placement
• VMTK
• Slicer To Kiwi Exporter

LUH

• Light Weight Robot IGT

Massachusetts General Hospital

• Slicer RT

Moka Creative LLC, Washington University in St. Louis

• XNATSlicer

NIRAL, UNC

• Intensity Segmenter
• Shape Population Viewer

Noware

• Swiss Skull Stripper

Orobix

• VMTK

PerkLab at Queen's University

• Py Dev Remote Debug

PerkLab, Queen's

• Multidim Data

PerkLab, Queen's University

• Gel Dosimetry Analysis
• Matlab Bridge
• Scoliosis
• Slicer RT
• Volume Clip

PMH

• Multidim Data

Queen's University

• Perk Tutor
• Resection Planner
• Slicer IGT

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

• Matlab Bridge
• Slicer RT

SBU

• LAScar Segmenter
• LASegmenter
• RSSExtension

SCI Institute

• Cleaver Extension

Shiga University of Medical Science, Japan

• Corner Annotation

Shiga University of Medical Science, Japan, SPL

• Percutaneous Approach Analysis

SPL

• Change Tracker
• Percutaneous Approach Analysis
• Reporting
• Window Level Effect

SPL and BWH

• TCIABrowser

SPL B&W Harvard

• PBNRR

SRI

• Pk Modeling

Stony Brook University

• Carrera Slice
• Fast Grow Cut Effect

Surgical Planning Lab

• Longitudinal PETCT

UAB

• Carrera Slice
• Fast Grow Cut Effect
• LAScar Segmenter
• LASegmenter
• RSSExtension
• Segmentation Aided Registration
• Sobolev Segmenter

UIowa

• Cardiac Agaston Measures

UNC

• CMFreg
• DTIAtlas Builder
• DTIAtlas Fiber Analyzer
• DTIPrep
• DTIProcess
• Fiber Viewer Light
• MABMIS
• Model To Model Distance
• Port Placement
• SPHARM-PDM

Univ of Michigan

• CMFreg

University College Cork

• Airway Segmentation

University of Bern

• Swiss Skull Stripper

University of Heidelberg

• Longitudinal PETCT

University of Iowa

• PETDICOMExtension

University of Utah

• ABC

Utah

• LAScar Segmenter
• LASegmenter
• Segmentation Aided Registration

UWA

• Thingiverse Browser

Washington University in St. Louis

• XNATSlicer

yogesh@bwh.harvard.edu

• UKFTractography

Extensions by contributing individual

136 contributing individuals:

• Alireza Mehrtash
• Allen Tannenbaum
• Akila Viswanathan
• Alex Yarmarkovich
• Alireza Mehrtash
• Allen Tannenbaum
• Andre Mastmeyer
• Antonio Damato
• Carl-Fredrik Westin
• Carl-Fredrik Westin.
• Christian Baumgartner
• Hans Johnson
• Ipek Oguz
• Ivan Kolesov
• Jan Egger
• Jiashu Zhang
• Kent Williams
• Lauren Barber
• Liangjia Zhu
• Luping Fang
• Martin Styner
• Matt Lougheed
• Matthew S. Holden
• Nabgha Fahrat
• Patricio Vela
• Peter Savadjiev
• Qing Pan
• Ryan Eckbo
• Sam Song
• Sandy Wells
• Tina Kapur
• Tobias Penzkofer
• Xiaojun CHEN
• Xiaojun Chen
• Yi Gao
• Yinpeng Li
• Yundi Shi
• Adrien Kaiser
• Alan Morris
• Alexis Girault
• Alireza Mehrtash
• Allen Tannenbaum
• and Ron Kikinis
• Andinet Enquobahrie
• Andras Lasso
• Andrey Fedorov
• Andriy Fedorov
• Andriy Kot
• Antonio Tristan-Vega
• Arie Nakhmani
• Arnaud Gelas
• Atsushi Yamada
• Beatriz Paniagua
• Bill Lorensen
• Bradley Lowekamp
• Brig Bagley
• Csaba Pinter
• Dan Marcus
• Daniel Haehn
• Danny Perry
• Demian Wasssermann
• Dinggang Shen
• Ethan Ulrich
• Eugene Kholmovski
• Fotis Drakopoulos
• Francois Budin
• Franklin King
• Greg Gardner
• Greg Sharp
• Guillaume Pernelle
• Hans Johnson
• Harini Veeraraghavan
• Ivan Kolesov
• Jayender Jagadeesan
• Jean-Christophe Fillion-Robin
• Jennifer Andrea
• Jessica Forbes
• Jim Miller
• Jonathan Bronson
• Josh Cates
• Julien Finet
• Juliette Pera
• Jun LIN
• Junichi Tokuda
• Karl Fritscher
• Kevin Wang
• Kilian Pohl
• Koichiro Murakami
• Laurent Chauvin
• Liang-Jia Zhu
• Liangjia Zhu
• Luca Antiga
• Luis G. Torres
• Mahnaz Maddah
• Manson Winsauer
• Marcel Prastawa
• Martha Shenton
• Martin Styner
• Matt Lougheed
• Mattea Welch
• Matthew Holden
• Mauricio Reyes
• Ming-ching Chang
• Minjeong Kim
• Nicole Aucoin
• Nigel Goh
• Nikos Chrisochoides
• Olivier Clatz
• Pat Marion
• Paul Mercea
• Pengdong Xiao
• Peter Black
• Peter Karasev
• Pietro Nardelli
• Rick Herrick
• Rob Mac Leod
• Ron Kikinis
• Ruifeng Chen
• Salma Bengali
• Sebastian Tauscher
• Stefan Bauer
• Stefan Lienhard
• Steve Pieper
• Sunil Kumar
• Sylvain Bouix
• Tamas Ungi
• Thomas Fejes
• Vinicius Boen
• Vivek Narayan
• Xiaodong Tao
• Xiaofeng Liu
• Xiaolei Chen
• Yi Gao
• Yingxuan Zhu
• Yixun Liu
• Yogesh Rathi

Alireza Mehrtash

• i Gyne

Allen Tannenbaum

• Fast Grow Cut Effect

Akila Viswanathan

• i Gyne
• Needle Finder

Alex Yarmarkovich

• Finsler Tractography

Alireza Mehrtash

• Needle Finder

Allen Tannenbaum

• Carrera Slice

Andre Mastmeyer

• Needle Finder

Antonio Damato

• i Gyne
• Needle Finder

Carl-Fredrik Westin

• Finsler Tractography

Carl-Fredrik Westin.

• UKFTractography

Christian Baumgartner

• UKFTractography

Hans Johnson

• UKFTractography

Ipek Oguz

• UKFTractography

Ivan Kolesov

• Fast Grow Cut Effect

Jan Egger

• i Gyne
• Needle Finder

Jiashu Zhang

• Gyro Guide

Kent Williams

• UKFTractography

Lauren Barber

• i Gyne
• Needle Finder

Liangjia Zhu

• Carrera Slice

Luping Fang

• Gyro Guide

Martin Styner

• UKFTractography

Matt Lougheed

• Volume Clip

Matthew S. Holden

• Perk Tutor

Nabgha Fahrat

• i Gyne
• Needle Finder

Patricio Vela

• Carrera Slice

Peter Savadjiev

• Finsler Tractography
• UKFTractography

Qing Pan

• Gyro Guide

Ryan Eckbo

• UKFTractography

Sam Song

• i Gyne
• Needle Finder

Sandy Wells

• i Gyne
• Needle Finder

Tina Kapur

• i Gyne
• Needle Finder

Tobias Penzkofer

• i Gyne
• Needle Finder

Xiaojun CHEN

• Model Clip

Xiaojun Chen

• i Gyne
• Needle Finder

Yi Gao

• i Gyne
• Needle Finder

Yinpeng Li

• UKFTractography

Yundi Shi

• UKFTractography

Adrien Kaiser

• DTIAtlas Builder

Alan Morris

• Cardiac MRI Toolkit
• LAScar Segmenter
• LASegmenter
• Segmentation Aided Registration

Alexis Girault

• Shape Population Viewer

Alireza Mehrtash

• TCIABrowser

Allen Tannenbaum

• LAScar Segmenter
• LASegmenter
• RSSExtension
• Segmentation Aided Registration
• Sobolev Segmenter

and Ron Kikinis

• Fast Grow Cut Effect

Andinet Enquobahrie

• Port Placement

Andras Lasso

• Matlab Bridge
• Multidim Data
• Py Dev Remote Debug
• Slicer RT
• Tracker Stabilizer
• Volume Clip

Andrey Fedorov

• CBC 3D I2MConversion
• Change Tracker
• Longitudinal PETCT
• PBNRR
• PETDICOMExtension
• Reporting
• TCIABrowser
• Window Level Effect

Andriy Fedorov

• Pk Modeling

Andriy Kot

• PBNRR

Antonio Tristan-Vega

• Finsler Tractography

Arie Nakhmani

• Sobolev Segmenter

Arnaud Gelas

• Swiss Skull Stripper

Atsushi Yamada

• Corner Annotation

Beatriz Paniagua

• Intensity Segmenter
• Model To Model Distance
• SPHARM-PDM

Bill Lorensen

• Swiss Skull Stripper

Bradley Lowekamp

• IASEM

Brig Bagley

• Cleaver Extension

Csaba Pinter

• Gel Dosimetry Analysis
• Slicer RT

Dan Marcus

• XNATSlicer

Daniel Haehn

• VMTK

Danny Perry

• LAScar Segmenter
• LASegmenter
• Segmentation Aided Registration

Demian Wasssermann

• Finsler Tractography

Dinggang Shen

• MABMIS

Ethan Ulrich

• PETDICOMExtension

Eugene Kholmovski

• Cardiac MRI Toolkit

Fotis Drakopoulos

• CBC 3D I2MConversion
• PBNRR

Francois Budin

• DTIAtlas Fiber Analyzer
• DTIPrep
• DTIProcess
• Fiber Viewer Light
• Intensity Segmenter
• Model To Model Distance
• SPHARM-PDM

Franklin King

• Scoliosis

Greg Gardner

• LAScar Segmenter
• LASegmenter
• Segmentation Aided Registration

Greg Sharp

• Slicer RT

Guillaume Pernelle

• hough Transform CLI
• i Gyne
• Needle Finder

Hans Johnson

• Cardiac Agaston Measures

Harini Veeraraghavan

• Faceted Visualizer

Ivan Kolesov

• Carrera Slice

Jayender Jagadeesan

• Open CAD
• Tracker Stabilizer

Jean-Christophe Fillion-Robin

• Change Tracker
• Matlab Bridge
• VMTK
• Slicer To Kiwi Exporter

Jennifer Andrea

• Gel Dosimetry Analysis

Jessica Forbes

• Cardiac Agaston Measures

Jim Miller

• MABMIS
• Pk Modeling

Jonathan Bronson

• Cleaver Extension

Josh Cates

• Cardiac MRI Toolkit
• LAScar Segmenter
• LASegmenter
• Segmentation Aided Registration

Julien Finet

• Image Maker

Juliette Pera

• Model To Model Distance

Jun LIN

• Model Clip

Junichi Tokuda

• Curve Maker
• Erode Dilate Label
• Light Weight Robot IGT
• Percutaneous Approach Analysis
• Slicer IGT

Karl Fritscher

• Carrera Slice

Kevin Wang

• Matlab Bridge
• Multidim Data
• Slicer RT

Kilian Pohl

• Change Tracker

Koichiro Murakami

• Percutaneous Approach Analysis

Laurent Chauvin

• Dice Computation
• Percutaneous Approach Analysis
• Tracker Stabilizer

Liang-Jia Zhu

• Segmentation Aided Registration

Liangjia Zhu

• Fast Grow Cut Effect
• LAScar Segmenter
• LASegmenter

Luca Antiga

• VMTK

Luis G. Torres

• Port Placement

Mahnaz Maddah

• Pk Modeling

Manson Winsauer

• CMFreg

Marcel Prastawa

• ABC

Martha Shenton

• RSSExtension

Martin Styner

• SPHARM-PDM

Matt Lougheed

• Resection Planner

Mattea Welch

• Gel Dosimetry Analysis

Matthew Holden

• Multidim Data

Mauricio Reyes

• Swiss Skull Stripper

Ming-ching Chang

• Pk Modeling

Minjeong Kim

• MABMIS

Nicole Aucoin

• Reporting

Nigel Goh

• Thingiverse Browser

Nikos Chrisochoides

• CBC 3D I2MConversion

Olivier Clatz

• PBNRR

Pat Marion

• Slicer To Kiwi Exporter

Paul Mercea

• Longitudinal PETCT

Pengdong Xiao

• Intensity Segmenter

Peter Black

• Change Tracker

Peter Karasev

• Carrera Slice

Pietro Nardelli

• Airway Segmentation

Rick Herrick

• XNATSlicer

Rob MacLeod

• Cardiac MRI Toolkit
• LAScar Segmenter
• LASegmenter
• Segmentation Aided Registration

Ron Kikinis

• Change Tracker
• RSSExtension

Ruifeng Chen

• Gyro Guide

Salma Bengali

• Cardiac MRI Toolkit

Sebastian Tauscher

• Light Weight Robot IGT

Stefan Bauer

• Swiss Skull Stripper

Stefan Lienhard

• UKFTractography

Steve Pieper

• Carrera Slice
• Reporting
• VMTK
• Slicer To Kiwi Exporter
• Window Level Effect
• XNATSlicer

Sunil Kumar

• XNATSlicer

Sylvain Bouix

• RSSExtension
• Segmentation Aided Registration

Tamas Ungi

• Perk Tutor
• Scoliosis
• Slicer IGT

Thomas Fejes

• Swiss Skull Stripper

Vinicius Boen

• CMFreg

Vivek Narayan

• Open CAD

Xiaodong Tao

• Skull Stripper

Xiaofeng Liu

• MABMIS

Xiaolei Chen

• Gyro Guide

Yi Gao

• Carrera Slice
• Fast Grow Cut Effect
• LAScar Segmenter
• LASegmenter
• RSSExtension
• Segmentation Aided Registration

Yingxuan Zhu

• Pk Modeling

Yixun Liu

• CBC 3D I2MConversion
• PBNRR

Yogesh Rathi

• UKFTractography