User:UpdateBot/Issue-2843-Consolidated-Extension-List

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Modules by name

156 modules:

Modules by category

30 categories:

BRAINS

LabelStatistics

BRAINSLabel Stats (built-in)

CMF Registration

Apply Matrix (bundled in CMFreg extension) Landmark Registration (bundled in CMFreg extension) Surface Registration (bundled in CMFreg extension) Label Extraction (bundled in CMFreg extension) Label Addition (bundled in CMFreg extension) Downsize (bundled in CMFreg extension)

Voxelbase Registration

Growing (bundled in CMFreg extension) Mask Creation (bundled in CMFreg extension) Non Growing (bundled in CMFreg extension)

Converters

Vector To Scalar Volume (built-in) Crop Volume (built-in) Create DICOMSeries (built-in) Orient Scalar Volume (built-in)

Developer Tools

Event Broker Double Arrays (built-in) Py Dev Remote Debug (bundled in Py Dev Remote Debug extension) Cameras (built-in) Extension Wizard (built-in) Execution Model Tour (built-in) Image Maker (bundled in Image Maker extension)

DICOM Plugins

DICOMRWVMPlugin DICOMLongitudinal PETCTPlugin Multi Volume Importer Plugin DICOMPETSUVPlugin DICOMDiffusion Volume Plugin DICOMSegmentation Plugin DICOMScalar Volume Plugin DICOMSlicer Data Bundle Plugin

Editor Extensions

Binary Watershed Effect (bundled in IASEM extension) Fast Grow Cut Effect (bundled in Fast Grow Cut Effect extension) Carrera Slice Effect (bundled in Carrera Slice extension) Double Threshold Effect (bundled in IASEM extension)

Matlab

Matlab Module Generator (bundled in Matlab Bridge extension) Matlab Commander (bundled in Matlab Bridge extension)

Diffusion

Tractography Display (built-in) DICOM2Full Brain Tractography (built-in)

Diffusion Data Conversion

DWIConvert (built-in)

Diffusion Tensor Images

Resample DTIVolume (built-in) Diffusion Tensor Scalar Measurements (built-in) Tractography Label Map Seeding (built-in) Tractography Interactive Seeding (built-in)

Diffusion Weighted Images

DWIRician LMMSEFilter (built-in) DWIJoint Rician LMMSEFilter (built-in) DWITo DTIEstimation (built-in) Finsler Backtracing (bundled in Finsler Tractography extension) Resample Scalar Vector DWIVolume (built-in) Finsler Tractography (bundled in Finsler Tractography extension) Diffusion Weighted Volume Masking (built-in)

Tractography

Fiber Bundle To Label Map (built-in) Fiber Bundle Label Select (built-in)

Editor Effects

Window Level Effect (bundled in Window Level Effect extension)

Endoscopy

Endoscopy (built-in)

Examples

Carrera Slice (bundled in Carrera Slice extension) Fast Grow Cut (bundled in Fast Grow Cut Effect extension) Fast Grow Cut Segmenter (bundled in Carrera Slice extension) Segmentation Aided Registration (bundled in Segmentation Aided Registration extension)

Exporter

Slicer To Kiwi Exporter (bundled in Slicer To Kiwi Exporter extension)

Filtering

Extract Skeleton (built-in) Threshold Scalar Volume (built-in) N4ITKBias Field Correction (built-in) Simple Filters (built-in) Image Label Combine (built-in) Voting Binary Hole Filling Image Filter (built-in) Histogram Matching (built-in) Checker Board Filter (built-in)

Arithmetic

Multiply Scalar Volumes (built-in) Add Scalar Volumes (built-in) Cast Scalar Volume (built-in) Subtract Scalar Volumes (built-in) Mask Scalar Volume (built-in)

Denoising

Gradient Anisotropic Diffusion (built-in) Median Image Filter (built-in) Gaussian Blur Image Filter (built-in) Curvature Anisotropic Diffusion (built-in)

Morphology

Grayscale Fill Hole Image Filter (built-in) Erode Label (bundled in Erode Dilate Label extension) Dilate Label (bundled in Erode Dilate Label extension) Grayscale Grind Peak Image Filter (built-in)

IGT

Percutaneous Approach Analysis (bundled in Percutaneous Approach Analysis extension) Port Placement (bundled in Port Placement extension) Open IGTLink IF (built-in) Needle Finder (bundled in Needle Finder extension) Tracker Stabilizer (bundled in Tracker Stabilizer extension) Gyro Guide (bundled in Gyro Guide extension) i Gyne (bundled in i Gyne extension) Corner Annotation (bundled in Corner Annotation extension)

Informatics

Annotations (built-in) Markups (built-in) Units (built-in) DICOM (built-in) Sample Data (built-in) Subject Hierarchy (built-in) Data (built-in) Colors (built-in) Curve Maker (bundled in Curve Maker extension) TCIABrowser (bundled in TCIABrowser extension)

Legacy

Converters

BSpline To Deformation Field (built-in)

Diffusion

Denoising

DWIUnbiased Non Local Means Filter (built-in)

Diffusion Data Conversion

DTIimport (built-in) DTIexport (built-in)

Filtering

Otsu Threshold Image Filter (built-in) Resample Scalar Volume (built-in)

Registration

Test Grid Transform Registration (built-in) Expert Automated Registration (built-in)

Work in Progress

Diffusion Tensor

Test

Diffusion Tensor Test (built-in)

Mesh Generation

Cleaver CLI (bundled in Cleaver Extension extension)

MeshGeneration

Body Centric Cubic Mesh (bundled in CBC 3D I2MConversion extension) Mesh Compression (bundled in CBC 3D I2MConversion extension)

Microscopy

Bin Shrink (bundled in IASEM extension) Label Object Statistics (bundled in IASEM extension) Spacing Aware Curvature Diffusion (bundled in IASEM extension) IASEMImport Series (bundled in IASEM extension) IASEMImport (bundled in IASEM extension)

Multidimensional data

Metafile Importer (bundled in Multidim Data extension) Sequence Browser (bundled in Multidim Data extension) Sequences (bundled in Multidim Data extension)

MultiVolume Support

Multi Volume Explorer (built-in) Multi Volume Importer (built-in)

Perk Tutor

Python Metrics Calculator (bundled in Perk Tutor extension) Workflow Segmentation (bundled in Perk Tutor extension) Transform Recorder (bundled in Perk Tutor extension) Perk Evaluator (bundled in Perk Tutor extension)

Quantification

PETStandard Uptake Value Computation (built-in) SUVFactor Calculator (bundled in PETDICOMExtension extension) Spinal Curvature Measurement (bundled in Scoliosis extension) Pk Modeling (bundled in Pk Modeling extension) Label Statistics (built-in) PETSUVImage Maker (bundled in Longitudinal PETCT extension) Dice Computation (bundled in Dice Computation extension) Data Probe (built-in)

ChangeQuantification

Intensity Difference Metric (bundled in Change Tracker extension)

Registration

BRAINSResample (built-in) Transforms (built-in) BRAINSResize (built-in) Perform Metric Test (built-in) BRAINSFit (built-in) PBNRR (bundled in PBNRR extension)

Specialized

ACPCTransform (built-in) Fiducial Registration (built-in) VBRAINSDemon Warp (built-in) BRAINSDemon Warp (built-in) Reformat (built-in)

Segmentation

Editor (built-in) EMSegment Quick (built-in) Simple Region Growing Segmentation (built-in) EMSegment (built-in) Volume Clip With Roi (bundled in Volume Clip extension) Swiss Skull Stripper (bundled in Swiss Skull Stripper extension) Airway Segmentation CLI (bundled in Airway Segmentation extension) LAScar Segmenter (bundled in LAScar Segmenter extension) Sobolev Segmenter (bundled in Sobolev Segmenter extension) Volume Clip With Model (bundled in Volume Clip extension) IGR3D MABMIS Testing (bundled in MABMIS extension) ABC (bundled in ABC extension) IGR3D MABMIS Training (bundled in MABMIS extension) Intensity Segmenter (bundled in Intensity Segmenter extension)

Specialized

EMSegment Command Line (built-in) Robust Statistics Segmenter (built-in) BRAINSROIAuto (built-in)

Slicelets

Gel Dosimetry Analysis Algo (bundled in Gel Dosimetry Analysis extension)

Surface Models

Model To Label Map (built-in) Merge Models (built-in) Surface Toolbox (built-in) Probe Volume With Model (built-in) Grayscale Model Maker (built-in) Label Map Smoothing (built-in) Model Maker (built-in)

Testing

Self Tests CLIROITest (built-in) CLI4Test Threshold Threading Test Scoliosis Monitoring (bundled in Scoliosis extension) Performance Tests Slicer MRBTest

TestCases

Slice Link Logic (built-in) Atlas Tests RSNAQuant Tutorial Volume Rendering Scene Close (built-in) test tractography display Subject Hierarchy Core Plugins Self Test slicer Close Crash Bug2590 Subject Hierarchy Generic Self Test Charting (built-in) Scene Performance (built-in) Markups In Compare Viewers Self Test fiber visibility crash2438 scene Import2428 RSNAVis Tutorial JRC2013Vis RSNA2012Prostate Demo Add Many Markups Fiducial Test Neurosurgical Planning Tutorial Markups Self Test Colors Scalar Bar Self Test Markups In Views Self Test Change Tracker Self Test Fiducial Layout Switch Bug1914 View Controllers Slice Interpolation Bug1926 Slicer4Minute (built-in) label Toggle Bug2049

Unspecified

BRAINSDWICleanup (built-in)

Utilities

Thingiverse Browser (bundled in Thingiverse Browser extension) EMSegment Transform To New Format (built-in) Data Store (built-in)

BRAINS

BRAINSTransform Convert (built-in)

Wizards

Compare Volumes (bundled in CMFreg extension) Change Tracker (bundled in Change Tracker extension)

Work in Progress

Longitudinal PETCT (bundled in Longitudinal PETCT extension)

Converters

Label To DICOMSEGConverter (bundled in Reporting extension)

Informatics

Reporting (bundled in Reporting extension)

TestCases

Reporting Self Test Label To DICOMSEGConverter Self Test

XNATSlicer

Xnat Slicer (bundled in XNATSlicer extension)

Modules by contributing organization

62 contributing organizations:

Asclepios INRIA

AZE R&D

  • JRC2013Vis

Brigham and Women's Hospital

BWH

BWH, SPL

BWH, SUMS

BWH/UAB

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China

CRTC

gatech

GE

Georgia Institute of Technology

Georgia Tech

IBM

Isomics

Isomics Inc.

  • DICOMDiffusion Volume Plugin
  • DICOMLongitudinal PETCTPlugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin
  • Slicer MRBTest
  • Threshold Threading Test

Isomics, Inc.

Isomics, pieper@isomics.com

Kitware

Kitware)

MGH

Moka Creative, LLC, kumar.sunil.p@gmail.com

MSC/NLM

Noware

Orobix

PerkLab at Queen's University

PerkLab, Queen's

PerkLab, Queen's University

PMH

Queen's

Queen's University

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

SAIC-Frederick, NCI-Frederick

SBU

SCI Institute

Shiga University of Medical Science, Japan, SPL

SNR

SPL

SPL B&W Harvard

SPL, BWH

SPL, BWH, UPenn

Stony Brook University

SUMS

Surgical Planning Lab

UAB

Uiowa

  • DWIConvert (built-in)

UIowa

  • DWIConvert (built-in)

UNC

Univ of Michigan

Univ. of Iowa

University College Cork

University of Alabama Birmingham

University of Heidelberg

University of Iowa

University of Iowa) and Andrey Fedorov (SPL

UPenn

Utah

UVa

UWA

WashU-St. Louis, dmarcus@wustl.edu

while at GE

Modules by contributing individual

163 contributing individuals:

Alex Yarmarkovich

Ali Ghayoor

  • BRAINSTransform Convert (built-in)

Allen Tannenbaum

and Hans Johnson.

Beatriz Paniagua from Department of Orthodontics

Brad Davis

  • EMSegment Command Line (built-in)

BWH

  • DICOMSegmentation Plugin
  • Multi Volume Importer Plugin

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

Daniel Haehn

  • EMSegment Command Line (built-in)

Demian Wassermann

Dinggang Shen

Francois Budin

Greg Harris

hans-johnson -at- uiowa.edu

  • BRAINSFit (built-in)
  • BRAINSROIAuto (built-in)

http://www.psychiatry.uiowa.edu

  • BRAINSFit (built-in)
  • BRAINSROIAuto (built-in)

Ivan Kolesov

Kilian Pohl

  • EMSegment (built-in)
  • EMSegment Command Line (built-in)

Lauren O'Donnell

  • Fiber Bundle Label Select (built-in)

Liangjia Zhu

Luping Fang

Matt Lougheed

Neuro Image Resarch and Analysis Laboratory

Patricio Vela

Peter Karasev

Peter Savadjiev

Polina Golland

  • EMSegment Command Line (built-in)

Qing Pan

the University of North Carolina at Chapel Hill

UNC Medical School

UofM School of Dentistry

UofM School Of Dentistry

Xiaofeng Liu

Yumin Yuan

  • EMSegment Command Line (built-in)

Akila Viswanathan

Alan Morris

Alex Yarmakovich

  • Models (built-in)
  • Tractography Interactive Seeding (built-in)

Alex Yarmarkovich

Ali Ghayoor

  • Perform Metric Test (built-in)

Alireza Mehrtash

Allen Tannenbaum

and Ron Kikinis

and Steve Pieper

Andinet Enquobahrie

Andras Lasso

Andreas Freudling

Andrey Fedorov

Andriy Kot

Anonymous

  • CLIROITest (built-in)
  • EMSegment Transform To New Format (built-in)

Antonio Damato

Antonio Tristan Vega

Arie Nakhmani

Atsushi Yamada

Benjamin Long

Bill Lorensen

Bradley Lowekamp

Bradley Lowekamp and Bill Lorensen

Casey B Goodlett

Charles Marion

Csaba Pinter

Dan Marcus

Daniel Blezek

Daniel Haehn

Danny Perry

Demian Wassermann

Dirk Padfield

Dominik Meier

Ethan Ulrich

Fotis Drakopoulos

Francois Budin

Franklin King

Greg Gardner

Guido Gerig

Guillaume Pernelle

Hans J. Johnson

  • BRAINSFit (built-in)
  • BRAINSROIAuto (built-in)
  • BRAINSTransform Convert (built-in)

Hans Johnson

Ivan Kolesov

Jan Egger

Jayender Jagadeesan

Jean-Baptiste Berger

Jean-Christophe Fillion-Robin

Jim Miller

Johan Andruejol

John Evans

Jonathan Bronson

Josh Cates

Joy Matsui

  • DWIConvert (built-in)

Julien Finet

Julien Jomier

Junichi Tokuda

Kent Williams

  • BRAINSTransform Convert (built-in)
  • DWIConvert (built-in)

Kevin Wang

Kilian Pohl

Koichiro Murakami

Lauren Barber

Lauren O'Donnell

Laurent Chauvin

Liang-Jia Zhu

Liangjia Zhu

Luca Antiga

Luis G. Torres

Marc Niethammer

Marcel Prastawa prastawa@sci.utah.edu

  • ABC (bundled in ABC extension)

Mark Scully

  • DWIConvert (built-in)

Markus Van Tol

Martin Styner

Matthew Holden

Matthew S. Holden

Matthew Woehlke

Michael Jeulin-Lagarrigue

Minjeong Kim

Nabgha Fahrat

Nicholas Herlambang

  • JRC2013Vis

Nick Tustison

Nicole Aucoin

Nigel Goh

Nikos Chrisochoides

Olivier Clatz

Pat Marion

Paul Mercea

Pengdong Xiao

Peter Black

Peter Karasev

Pierre Seroul

Pietro Nardelli

Raul San Jose

Rob MacLeod

Ron Kikinis

Ross Whitaker

Ruifeng Chen

Sam Song

Sandy Wells

Santiago Aja Fernandez

Sebastien Barré

Sebastien Barre

  • EMSegment Command Line (built-in)

Shigeyuki Naka

Soichiro Tani

Sonia Pujol

Stephen Aylward

Stephen R Aylward

Steve Pieper

Sunil Kumar

Sylvain Bouix

Tamas Ungi

This tool was developed by Hans J. Johnson and Greg Harris.

This tool was developed by Hans Johnson.

  • BRAINSResize (built-in)

This tool was developed by Kent Williams.

  • BRAINSDWICleanup (built-in)

This tool was developed by Vincent Magnotta

Tina Kapur

Tobias Penzkofer

Tohru Tani

Vince Magnotta

  • DWIConvert (built-in)

Vincent A. Magnotta

  • BRAINSLabel Stats (built-in)

Vinicius Boen

Vinicius Boen and Mason Winsauer

Wendy Plesniak

Xiaodong Tao

Xiaojun Chen

Yanling Liu

Yi Gao

Yinglin Lee

  • Test Grid Transform Registration (built-in)

Yingxuan Zhu

Yixun Liu

Yong Zhang

Extensions by name

67 extensions:

Extensions by category

26 categories:

Cardiac

Cardiac Agaston Measures

Cardiac MRI toolkit

Cardiac MRI Toolkit

Converters

PETDICOMExtension

Developer Tools

Image Maker Py Dev Remote Debug Matlab Bridge

Diffusion

DTIAtlas Builder DTIProcess Fiber Viewer Light DTIAtlas Fiber Analyzer DTIPrep

Editor Effects

Window Level Effect

Exporter

Slicer To Kiwi Exporter

Filtering

Morphology

Erode Dilate Label

IGT

Port Placement Light Weight Robot IGT Gyro Guide Corner Annotation i Gyne Slicer IGT Percutaneous Approach Analysis Needle Finder Tracker Stabilizer Resection Planner

Informatics

Reporting Longitudinal PETCT Faceted Visualizer TCIABrowser Curve Maker

Mesh Generation

CBC 3D I2MConversion Cleaver Extension

Microscopy

IASEM

Multidimensional data

Multidim Data

Quantification

Dice Computation Pk Modeling

Radiotherapy

Slicer RT Gel Dosimetry Analysis

Registration

CMFreg Segmentation Aided Registration PBNRR

Remote

XNATSlicer

Scoliosis

Scoliosis

Segmentation

Open CAD Swiss Skull Stripper Carrera Slice Skull Stripper Airway Segmentation hough Transform CLI LAScar Segmenter RSSExtension ABC MABMIS Sobolev Segmenter LASegmenter Fast Grow Cut Effect Intensity Segmenter Volume Clip

Shape Analysis

Model To Model Distance Shape Population Viewer SPHARM-PDM

Surface Models

Model Clip

Tractography

Finsler Tractography UKFTractography

Training

Perk Tutor

Utilities

Thingiverse Browser

Vascular Modeling Toolkit

VMTK

Wizards

Change Tracker

Extensions by contributing organization

54 contributing organizations:

Asclepios INRIA) and Nikos Chrisochoides (CRTC

Boston Childrens Hospital

Brigham and Women's Hospital

BWH

BWH & MGH

BWH, SPL

BWH/UAB

CARMA

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China

Crisalix

CRTC

Department of Neurosurgery, PLA General Hospital, Beijing, China

Department of Orthodontics, UNC

GE

GE GLobal Research

GT

Isomics

Kitware

LUH

Massachusetts General Hospital

Moka Creative LLC, Washington University in St. Louis

NIRAL, UNC

Noware

Orobix

PerkLab at Queen's University

PerkLab, Queen's

PerkLab, Queen's University

PMH

Queen's University

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

SBU

SCI Institute

Shiga University of Medical Science, Japan

Shiga University of Medical Science, Japan, SPL

SPL

SPL and BWH

SPL B&W Harvard

SRI

Stony Brook University

Surgical Planning Lab

UAB

UIowa

UNC

Univ of Michigan

University College Cork

University of Bern

University of Heidelberg

University of Iowa

University of Utah

Utah

UWA

Washington University in St. Louis

yogesh@bwh.harvard.edu

Extensions by contributing individual

136 contributing individuals:

Alireza Mehrtash

Allen Tannenbaum

Akila Viswanathan

Alex Yarmarkovich

Alireza Mehrtash

Allen Tannenbaum

Andre Mastmeyer

Antonio Damato

Carl-Fredrik Westin

Carl-Fredrik Westin.

Christian Baumgartner

Hans Johnson

Ipek Oguz

Ivan Kolesov

Jan Egger

Jiashu Zhang

Kent Williams

Lauren Barber

Liangjia Zhu

Luping Fang

Martin Styner

Matt Lougheed

Matthew S. Holden

Nabgha Fahrat

Patricio Vela

Peter Savadjiev

Qing Pan

Ryan Eckbo

Sam Song

Sandy Wells

Tina Kapur

Tobias Penzkofer

Xiaojun CHEN

Xiaojun Chen

Yi Gao

Yinpeng Li

Yundi Shi

Adrien Kaiser

Alan Morris

Alexis Girault

Alireza Mehrtash

Allen Tannenbaum

and Ron Kikinis

Andinet Enquobahrie

Andras Lasso

Andrey Fedorov

Andriy Fedorov

Andriy Kot

Antonio Tristan-Vega

Arie Nakhmani

Arnaud Gelas

Atsushi Yamada

Beatriz Paniagua

Bill Lorensen

Bradley Lowekamp

Brig Bagley

Csaba Pinter

Dan Marcus

Daniel Haehn

Danny Perry

Demian Wasssermann

Dinggang Shen

Ethan Ulrich

Eugene Kholmovski

Fotis Drakopoulos

Francois Budin

Franklin King

Greg Gardner

Greg Sharp

Guillaume Pernelle

Hans Johnson

Harini Veeraraghavan

Ivan Kolesov

Jayender Jagadeesan

Jean-Christophe Fillion-Robin

Jennifer Andrea

Jessica Forbes

Jim Miller

Jonathan Bronson

Josh Cates

Julien Finet

Juliette Pera

Jun LIN

Junichi Tokuda

Karl Fritscher

Kevin Wang

Kilian Pohl

Koichiro Murakami

Laurent Chauvin

Liang-Jia Zhu

Liangjia Zhu

Luca Antiga

Luis G. Torres

Mahnaz Maddah

Manson Winsauer

Marcel Prastawa

Martha Shenton

Martin Styner

Matt Lougheed

Mattea Welch

Matthew Holden

Mauricio Reyes

Ming-ching Chang

Minjeong Kim

Nicole Aucoin

Nigel Goh

Nikos Chrisochoides

Olivier Clatz

Pat Marion

Paul Mercea

Pengdong Xiao

Peter Black

Peter Karasev

Pietro Nardelli

Rick Herrick

Rob MacLeod

Ron Kikinis

Ruifeng Chen

Salma Bengali

Sebastian Tauscher

Stefan Bauer

Stefan Lienhard

Steve Pieper

Sunil Kumar

Sylvain Bouix

Tamas Ungi

Thomas Fejes

Vinicius Boen

Vivek Narayan

Xiaodong Tao

Xiaofeng Liu

Xiaolei Chen

Yi Gao

Yingxuan Zhu

Yixun Liu

Yogesh Rathi