User:UpdateBot/Issue-2843-Consolidated-Extension-List

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Revision as of 01:17, 5 December 2014 by UpdateBot (talk | contribs) (This page has been updated based on the list of extension description files available on the ExtensionsIndex)
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Contents

Modules by name

156 modules:

Modules by name

156 modules:

Modules by category

30 categories

BRAINS

LabelStatistics

  • BRAINSLabelStats

CMF Registration

  • ApplyMatrix
  • LandmarkRegistration
  • SurfaceRegistration
  • LabelExtraction
  • LabelAddition
  • Downsize

Voxelbase Registration

  • Growing
  • MaskCreation
  • NonGrowing

Converters

  • VectorToScalarVolume
  • CropVolume
  • CreateDICOMSeries
  • OrientScalarVolume

Developer Tools

  • EventBroker
  • DoubleArrays
  • PyDevRemoteDebug
  • Cameras
  • ExtensionWizard
  • ExecutionModelTour
  • ImageMaker

DICOM Plugins

  • DICOMRWVMPlugin
  • DICOMLongitudinalPETCTPlugin
  • MultiVolumeImporterPlugin
  • DICOMPETSUVPlugin
  • DICOMDiffusionVolumePlugin
  • DICOMSegmentationPlugin
  • DICOMScalarVolumePlugin
  • DICOMSlicerDataBundlePlugin

Editor Extensions

  • BinaryWatershedEffect
  • FastGrowCutEffect
  • CarreraSliceEffect
  • DoubleThresholdEffect

Matlab

  • MatlabModuleGenerator
  • MatlabCommander

Diffusion

  • TractographyDisplay
  • DICOM2FullBrainTractography

Diffusion Data Conversion

  • DWIConvert

Diffusion Tensor Images

  • ResampleDTIVolume
  • DiffusionTensorScalarMeasurements
  • TractographyLabelMapSeeding
  • TractographyInteractiveSeeding

Diffusion Weighted Images

  • DWIRicianLMMSEFilter
  • DWIJointRicianLMMSEFilter
  • DWIToDTIEstimation
  • FinslerBacktracing
  • ResampleScalarVectorDWIVolume
  • FinslerTractography
  • DiffusionWeightedVolumeMasking

Tractography

  • FiberBundleToLabelMap
  • FiberBundleLabelSelect

Editor Effects

  • WindowLevelEffect

Endoscopy

  • Endoscopy

Examples

  • CarreraSlice
  • FastGrowCut
  • FastGrowCutSegmenter
  • SegmentationAidedRegistration

Exporter

  • SlicerToKiwiExporter

Filtering

  • ExtractSkeleton
  • ThresholdScalarVolume
  • N4ITKBiasFieldCorrection
  • SimpleFilters
  • ImageLabelCombine
  • VotingBinaryHoleFillingImageFilter
  • HistogramMatching
  • CheckerBoardFilter

Arithmetic

  • MultiplyScalarVolumes
  • AddScalarVolumes
  • CastScalarVolume
  • SubtractScalarVolumes
  • MaskScalarVolume

Denoising

  • GradientAnisotropicDiffusion
  • MedianImageFilter
  • GaussianBlurImageFilter
  • CurvatureAnisotropicDiffusion

Morphology

  • GrayscaleFillHoleImageFilter
  • ErodeLabel
  • DilateLabel
  • GrayscaleGrindPeakImageFilter

IGT

  • PercutaneousApproachAnalysis
  • PortPlacement
  • OpenIGTLinkIF
  • NeedleFinder
  • TrackerStabilizer
  • GyroGuide
  • iGyne
  • CornerAnnotation

Informatics

  • Annotations
  • Markups
  • Units
  • DICOM
  • SampleData
  • SubjectHierarchy
  • Data
  • Colors
  • CurveMaker
  • TCIABrowser

Legacy

Converters

  • BSplineToDeformationField

Diffusion

Denoising

  • DWIUnbiasedNonLocalMeansFilter

Diffusion Data Conversion

  • DTIimport
  • DTIexport

Filtering

  • OtsuThresholdImageFilter
  • ResampleScalarVolume

Registration

  • TestGridTransformRegistration
  • ExpertAutomatedRegistration

Work in Progress

Diffusion Tensor

Test
  • DiffusionTensorTest

Mesh Generation

  • CleaverCLI

MeshGeneration

  • BodyCentricCubicMesh
  • MeshCompression

Microscopy

  • BinShrink
  • LabelObjectStatistics
  • SpacingAwareCurvatureDiffusion
  • IASEMImportSeries
  • IASEMImport

Multidimensional data

  • MetafileImporter
  • SequenceBrowser
  • Sequences

MultiVolume Support

  • MultiVolumeExplorer
  • MultiVolumeImporter

Perk Tutor

  • PythonMetricsCalculator
  • WorkflowSegmentation
  • TransformRecorder
  • PerkEvaluator

Quantification

  • PETStandardUptakeValueComputation
  • SUVFactorCalculator
  • SpinalCurvatureMeasurement
  • PkModeling
  • LabelStatistics
  • PETSUVImageMaker
  • DiceComputation
  • DataProbe

ChangeQuantification

  • IntensityDifferenceMetric

Registration

  • BRAINSResample
  • Transforms
  • BRAINSResize
  • PerformMetricTest
  • BRAINSFit
  • PBNRR

Specialized

  • ACPCTransform
  • FiducialRegistration
  • VBRAINSDemonWarp
  • BRAINSDemonWarp
  • Reformat

Segmentation

  • Editor
  • EMSegmentQuick
  • SimpleRegionGrowingSegmentation
  • EMSegment
  • VolumeClipWithRoi
  • SwissSkullStripper
  • AirwaySegmentationCLI
  • LAScarSegmenter
  • SobolevSegmenter
  • VolumeClipWithModel
  • IGR3D_MABMIS_Testing
  • ABC
  • IGR3D_MABMIS_Training
  • IntensitySegmenter

Specialized

  • EMSegmentCommandLine
  • RobustStatisticsSegmenter
  • BRAINSROIAuto

Slicelets

  • GelDosimetryAnalysisAlgo

Surface Models

  • ModelToLabelMap
  • MergeModels
  • SurfaceToolbox
  • ProbeVolumeWithModel
  • GrayscaleModelMaker
  • LabelMapSmoothing
  • ModelMaker

Testing

  • SelfTests
  • CLIROITest
  • CLI4Test
  • ThresholdThreadingTest
  • ScoliosisMonitoring
  • PerformanceTests
  • SlicerMRBTest

TestCases

  • SliceLinkLogic
  • AtlasTests
  • RSNAQuantTutorial
  • VolumeRenderingSceneClose
  • test_tractography_display
  • SubjectHierarchyCorePluginsSelfTest
  • slicerCloseCrashBug2590
  • SubjectHierarchyGenericSelfTest
  • Charting
  • ScenePerformance
  • MarkupsInCompareViewersSelfTest
  • fiber_visibility_crash2438
  • sceneImport2428
  • RSNAVisTutorial
  • JRC2013Vis
  • RSNA2012ProstateDemo
  • AddManyMarkupsFiducialTest
  • NeurosurgicalPlanningTutorialMarkupsSelfTest
  • ColorsScalarBarSelfTest
  • MarkupsInViewsSelfTest
  • ChangeTrackerSelfTest
  • FiducialLayoutSwitchBug1914
  • ViewControllersSliceInterpolationBug1926
  • Slicer4Minute
  • labelToggleBug2049

Unspecified

  • BRAINSDWICleanup

Utilities

  • ThingiverseBrowser
  • EMSegmentTransformToNewFormat
  • DataStore

BRAINS

  • BRAINSTransformConvert

Wizards

  • CompareVolumes
  • ChangeTracker

Work in Progress

  • LongitudinalPETCT

Converters

  • LabelToDICOMSEGConverter

Informatics

  • Reporting

TestCases

  • ReportingSelfTest
  • LabelToDICOMSEGConverterSelfTest

XNATSlicer

  • XnatSlicer

Modules by contributing organization

62 contributing organizations

Asclepios INRIA

AZE R&D

  • JRC2013Vis

Brigham and Women's Hospital

BWH

BWH, SPL

BWH, SUMS

BWH/UAB

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China

CRTC

gatech

GE

Georgia Institute of Technology

Georgia Tech

IBM

Isomics

Isomics Inc.

  • DICOMDiffusion Volume Plugin
  • DICOMLongitudinal PETCTPlugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin
  • Slicer MRBTest
  • Threshold Threading Test

Isomics, Inc.

Isomics, pieper@isomics.com

Kitware

Kitware)

MGH

Moka Creative, LLC, kumar.sunil.p@gmail.com

MSC/NLM

Noware

Orobix

PerkLab at Queen's University

PerkLab, Queen's

PerkLab, Queen's University

PMH

Queen's

Queen's University

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

SAIC-Frederick, NCI-Frederick

SBU

SCI Institute

Shiga University of Medical Science, Japan, SPL

SNR

SPL

SPL B&W Harvard

SPL, BWH

SPL, BWH, UPenn

Stony Brook University

SUMS

Surgical Planning Lab

UAB

Uiowa

  • DWIConvert (cli, built-in)

UIowa

  • DWIConvert (cli, built-in)

UNC

Univ of Michigan

Univ. of Iowa

University College Cork

University of Alabama Birmingham

University of Heidelberg

University of Iowa

University of Iowa) and Andrey Fedorov (SPL

UPenn

Utah

UVa

UWA

WashU-St. Louis, dmarcus@wustl.edu

while at GE

Modules by contributing organization

62 contributing organizations

Modules by contributing individual

163 contributing individuals

Alex Yarmarkovich

Ali Ghayoor

  • BRAINSTransform Convert (cli, built-in)

Allen Tannenbaum

and Hans Johnson.

Beatriz Paniagua from Department of Orthodontics

Brad Davis

  • EMSegment Command Line (cli, built-in)

BWH

  • DICOMSegmentation Plugin
  • Multi Volume Importer Plugin

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

Daniel Haehn

  • EMSegment Command Line (cli, built-in)

Demian Wassermann

Dinggang Shen

Francois Budin

Greg Harris

hans-johnson -at- uiowa.edu

  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)

http://www.psychiatry.uiowa.edu

  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)

Ivan Kolesov

Kilian Pohl

  • EMSegment (loadable, built-in)
  • EMSegment Command Line (cli, built-in)

Lauren O'Donnell

  • Fiber Bundle Label Select (cli, built-in)

Liangjia Zhu

Luping Fang

Matt Lougheed

Neuro Image Resarch and Analysis Laboratory

Patricio Vela

Peter Karasev

Peter Savadjiev

Polina Golland

  • EMSegment Command Line (cli, built-in)

Qing Pan

the University of North Carolina at Chapel Hill

UNC Medical School

UofM School of Dentistry

UofM School Of Dentistry

Xiaofeng Liu

Yumin Yuan

  • EMSegment Command Line (cli, built-in)

Akila Viswanathan

Alan Morris

Alex Yarmakovich

  • Models (loadable, built-in)
  • Tractography Interactive Seeding (loadable, built-in)

Alex Yarmarkovich

Ali Ghayoor

  • Perform Metric Test (cli, built-in)

Alireza Mehrtash

Allen Tannenbaum

and Ron Kikinis

and Steve Pieper

Andinet Enquobahrie

Andras Lasso

Andreas Freudling

Andrey Fedorov

Andriy Kot

Anonymous

  • CLIROITest (cli, built-in)
  • EMSegment Transform To New Format (cli, built-in)

Antonio Damato

Antonio Tristan Vega

Arie Nakhmani

Atsushi Yamada

Benjamin Long

Bill Lorensen

Bradley Lowekamp

Bradley Lowekamp and Bill Lorensen

Casey B Goodlett

Charles Marion

Csaba Pinter

Dan Marcus

Daniel Blezek

Daniel Haehn

Danny Perry

Demian Wassermann

Dirk Padfield

Dominik Meier

Ethan Ulrich

Fotis Drakopoulos

Francois Budin

Franklin King

Greg Gardner

Guido Gerig

Guillaume Pernelle

Hans J. Johnson

  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)
  • BRAINSTransform Convert (cli, built-in)

Hans Johnson

Ivan Kolesov

Jan Egger

Jayender Jagadeesan

Jean-Baptiste Berger

Jean-Christophe Fillion-Robin

Jim Miller

Johan Andruejol

  • Units (loadable, built-in)

John Evans

Jonathan Bronson

Josh Cates

Joy Matsui

  • DWIConvert (cli, built-in)

Julien Finet

Julien Jomier

Junichi Tokuda

Kent Williams

  • BRAINSTransform Convert (cli, built-in)
  • DWIConvert (cli, built-in)

Kevin Wang

Kilian Pohl

Koichiro Murakami

Lauren Barber

Lauren O'Donnell

Laurent Chauvin

Liang-Jia Zhu

Liangjia Zhu

Luca Antiga

Luis G. Torres

Marc Niethammer

Marcel Prastawa prastawa@sci.utah.edu

  • ABC (cli, bundled in ABC extension)

Mark Scully

  • DWIConvert (cli, built-in)

Markus Van Tol

Martin Styner

Matthew Holden

Matthew S. Holden

Matthew Woehlke

Michael Jeulin-Lagarrigue

Minjeong Kim

Nabgha Fahrat

Nicholas Herlambang

  • JRC2013Vis

Nick Tustison

Nicole Aucoin

Nigel Goh

Nikos Chrisochoides

Olivier Clatz

Pat Marion

Paul Mercea

Pengdong Xiao

Peter Black

Peter Karasev

Pierre Seroul

Pietro Nardelli

Raul San Jose

Rob MacLeod

Ron Kikinis

Ross Whitaker

Ruifeng Chen

Sam Song

Sandy Wells

Santiago Aja Fernandez

Sebastien Barré

Sebastien Barre

  • EMSegment Command Line (cli, built-in)

Shigeyuki Naka

Soichiro Tani

Sonia Pujol

Stephen Aylward

Stephen R Aylward

Steve Pieper

Sunil Kumar

Sylvain Bouix

Tamas Ungi

This tool was developed by Hans J. Johnson and Greg Harris.

This tool was developed by Hans Johnson.

  • BRAINSResize (cli, built-in)

This tool was developed by Kent Williams.

  • BRAINSDWICleanup (cli, built-in)

This tool was developed by Vincent Magnotta

Tina Kapur

Tobias Penzkofer

Tohru Tani

Vince Magnotta

  • DWIConvert (cli, built-in)

Vincent A. Magnotta

  • BRAINSLabel Stats (cli, built-in)

Vinicius Boen

Vinicius Boen and Mason Winsauer

Wendy Plesniak

Xiaodong Tao

Xiaojun Chen

Yanling Liu

Yi Gao

Yinglin Lee

  • Test Grid Transform Registration (cli, built-in)

Yingxuan Zhu

Yixun Liu

Yong Zhang

Modules by contributing individual

163 contributing individuals

Modules by type

3 types

cli

loadable

scripted

Modules by type

3 types

Extensions by name

67 extensions:

Extensions by name

67 extensions:

Extensions by category

26 categories

Cardiac

  • CardiacAgastonMeasures

Cardiac MRI toolkit

  • Cardiac_MRI_Toolkit

Converters

  • PETDICOMExtension

Developer Tools

  • ImageMaker
  • PyDevRemoteDebug
  • MatlabBridge

Diffusion

  • DTIAtlasBuilder
  • DTIProcess
  • FiberViewerLight
  • DTIAtlasFiberAnalyzer
  • DTIPrep

Editor Effects

  • WindowLevelEffect

Exporter

  • SlicerToKiwiExporter

Filtering

Morphology

  • ErodeDilateLabel

IGT

  • PortPlacement
  • LightWeightRobotIGT
  • GyroGuide
  • CornerAnnotation
  • iGyne
  • SlicerIGT
  • PercutaneousApproachAnalysis
  • NeedleFinder
  • TrackerStabilizer
  • ResectionPlanner

Informatics

  • Reporting
  • LongitudinalPETCT
  • FacetedVisualizer
  • TCIABrowser
  • CurveMaker

Mesh Generation

  • CBC_3D_I2MConversion
  • CleaverExtension

Microscopy

  • IASEM

Multidimensional data

  • MultidimData

Quantification

  • DiceComputation
  • PkModeling

Radiotherapy

  • SlicerRT
  • GelDosimetryAnalysis

Registration

  • CMFreg
  • SegmentationAidedRegistration
  • PBNRR

Remote

  • XNATSlicer

Scoliosis

  • Scoliosis

Segmentation

  • OpenCAD
  • SwissSkullStripper
  • CarreraSlice
  • SkullStripper
  • AirwaySegmentation
  • houghTransformCLI
  • LAScarSegmenter
  • RSSExtension
  • ABC
  • MABMIS
  • SobolevSegmenter
  • LASegmenter
  • FastGrowCutEffect
  • IntensitySegmenter
  • VolumeClip

Shape Analysis

  • ModelToModelDistance
  • ShapePopulationViewer
  • SPHARM-PDM

Surface Models

  • ModelClip

Tractography

  • FinslerTractography
  • UKFTractography

Training

  • PerkTutor

Utilities

  • ThingiverseBrowser

Vascular Modeling Toolkit

  • SlicerExtension-VMTK

Wizards

  • ChangeTracker

Extensions by contributing organization

54 contributing organizations

Asclepios INRIA) and Nikos Chrisochoides (CRTC

Boston Childrens Hospital

Brigham and Women's Hospital

BWH

BWH & MGH

BWH, SPL

BWH/UAB

CARMA

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China

Crisalix

CRTC

Department of Neurosurgery, PLA General Hospital, Beijing, China

Department of Orthodontics, UNC

GE

GE GLobal Research

GT

Isomics

Kitware

LUH

Massachusetts General Hospital

Moka Creative LLC, Washington University in St. Louis

NIRAL, UNC

Noware

Orobix

PerkLab at Queen's University

PerkLab, Queen's

PerkLab, Queen's University

PMH

Queen's University

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

SBU

SCI Institute

Shiga University of Medical Science, Japan

Shiga University of Medical Science, Japan, SPL

SPL

SPL and BWH

SPL B&W Harvard

SRI

Stony Brook University

Surgical Planning Lab

UAB

UIowa

UNC

Univ of Michigan

University College Cork

University of Bern

University of Heidelberg

University of Iowa

University of Utah

Utah

UWA

Washington University in St. Louis

yogesh@bwh.harvard.edu

Extensions by contributing organization

54 contributing organizations

Extensions by contributing individual

136 contributing individuals

Alireza Mehrtash

Allen Tannenbaum

Akila Viswanathan

Alex Yarmarkovich

Alireza Mehrtash

Allen Tannenbaum

Andre Mastmeyer

Antonio Damato

Carl-Fredrik Westin

Carl-Fredrik Westin.

Christian Baumgartner

Hans Johnson

Ipek Oguz

Ivan Kolesov

Jan Egger

Jiashu Zhang

Kent Williams

Lauren Barber

Liangjia Zhu

Luping Fang

Martin Styner

Matt Lougheed

Matthew S. Holden

Nabgha Fahrat

Patricio Vela

Peter Savadjiev

Qing Pan

Ryan Eckbo

Sam Song

Sandy Wells

Tina Kapur

Tobias Penzkofer

Xiaojun CHEN

Xiaojun Chen

Yi Gao

Yinpeng Li

Yundi Shi

Adrien Kaiser

Alan Morris

Alexis Girault

Alireza Mehrtash

Allen Tannenbaum

and Ron Kikinis

Andinet Enquobahrie

Andras Lasso

Andrey Fedorov

Andriy Fedorov

Andriy Kot

Antonio Tristan-Vega

Arie Nakhmani

Arnaud Gelas

Atsushi Yamada

Beatriz Paniagua

Bill Lorensen

Bradley Lowekamp

Brig Bagley

Csaba Pinter

Dan Marcus

Daniel Haehn

Danny Perry

Demian Wasssermann

Dinggang Shen

Ethan Ulrich

Eugene Kholmovski

Fotis Drakopoulos

Francois Budin

Franklin King

Greg Gardner

Greg Sharp

Guillaume Pernelle

Hans Johnson

Harini Veeraraghavan

Ivan Kolesov

Jayender Jagadeesan

Jean-Christophe Fillion-Robin

Jennifer Andrea

Jessica Forbes

Jim Miller

Jonathan Bronson

Josh Cates

Julien Finet

Juliette Pera

Jun LIN

Junichi Tokuda

Karl Fritscher

Kevin Wang

Kilian Pohl

Koichiro Murakami

Laurent Chauvin

Liang-Jia Zhu

Liangjia Zhu

Luca Antiga

Luis G. Torres

Mahnaz Maddah

Manson Winsauer

Marcel Prastawa

Martha Shenton

Martin Styner

Matt Lougheed

Mattea Welch

Matthew Holden

Mauricio Reyes

Ming-ching Chang

Minjeong Kim

Nicole Aucoin

Nigel Goh

Nikos Chrisochoides

Olivier Clatz

Pat Marion

Paul Mercea

Pengdong Xiao

Peter Black

Peter Karasev

Pietro Nardelli

Rick Herrick

Rob MacLeod

Ron Kikinis

Ruifeng Chen

Salma Bengali

Sebastian Tauscher

Stefan Bauer

Stefan Lienhard

Steve Pieper

Sunil Kumar

Sylvain Bouix

Tamas Ungi

Thomas Fejes

Vinicius Boen

Vivek Narayan

Xiaodong Tao

Xiaofeng Liu

Xiaolei Chen

Yi Gao

Yingxuan Zhu

Yixun Liu

Yogesh Rathi

Extensions by contributing individual

136 contributing individuals