User:UpdateBot/Issue-2843-Consolidated-Extension-List/4.4

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Information on how to use Slicer Issue-2843-Consolidated-Extension-List
  • FAQ
Set of common questions/answers

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List of extensions known to be broken



Developers Corner


  • Information for Software Developers
Source code, contribute patch, develop modules
Intended for discussion of programming related questions

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  • Documentation guidelines
Slicer user documentation principle and guidelines
  • Visual blog
Set of screenshots showing Slicer in action.
  • Release Notes
Platform specific issues and considerations
Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself.

Documentación en Español   NEW


Breve descripción de proyecto y un breve viaje por sus principales herramientas y funcionalidades.
Guía de uso para la herramienta de creación de reconstrucciones volumétricas de 3D Slicer.
Guía rápida introductoria para la creación de contornos de órganos para generar vistas volumétricas.
Manual de uso de la herramienta para 3D Slicer desarrollada por Steve Pieper para realizar endoscopías virtuales.
Introducción a la extensión SlicerRT para 3D Slicer enfocada en investigación en radioterapia.



List of extensions known to be broken

Modules by name

215 modules:

Modules by category

36 categories:

BRAINS

LabelStatistics

  • BRAINSLabel Stats

Cardiac MRI Toolkit

CMF Registration

Voxelbase Registration

Converters

  • Vector To Scalar Volume
  • Crop Volume
  • Orient Scalar Volume
  • Create DICOMSeries

Developer Tools

DICOM Plugins

  • DICOMLongitudinal PETCTPlugin
  • DICOMRWVMPlugin
  • Multi Volume Importer Plugin
  • DICOMPETSUVPlugin
  • Dicom Rt Import Plugin
  • DICOMDiffusion Volume Plugin
  • DICOMSegmentation Plugin
  • Dicom Sro Import Plugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin

Editor Extensions

Matlab

Diffusion

  • Tractography Display
  • DICOM2Full Brain Tractography

Diffusion Data Conversion

  • DWIConvert

Diffusion Tensor Images

  • Resample DTIVolume
  • Diffusion Tensor Scalar Measurements
  • Tractography Label Map Seeding
  • Tractography Interactive Seeding

Diffusion Weighted Images

FiberAnalysis

Tractography

Editor Effects

Endoscopy

  • Endoscopy

Examples

Exporter

File

Filtering

  • Extract Skeleton
  • Threshold Scalar Volume
  • N4ITKBias Field Correction
  • Simple Filters
  • Image Label Combine
  • Voting Binary Hole Filling Image Filter
  • Histogram Matching
  • Checker Board Filter

Arithmetic

  • Multiply Scalar Volumes
  • Add Scalar Volumes
  • Cast Scalar Volume
  • Subtract Scalar Volumes
  • Mask Scalar Volume

Denoising

  • Gradient Anisotropic Diffusion
  • Median Image Filter
  • Gaussian Blur Image Filter
  • Curvature Anisotropic Diffusion

Morphology

IGT

Informatics

Legacy

Converters

  • BSpline To Deformation Field

Diffusion

Denoising

  • DWIUnbiased Non Local Means Filter

Diffusion Data Conversion

  • DTIimport
  • DTIexport

Filtering

  • Otsu Threshold Image Filter
  • Resample Scalar Volume

Registration

  • Test Grid Transform Registration
  • Expert Automated Registration

Work in Progress

Diffusion Tensor

Test
  • Diffusion Tensor Test

Mesh Generation

MeshGeneration

Microscopy

Multidimensional data

MultiVolume Support

  • Multi Volume Explorer
  • Multi Volume Importer

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiotherapy

Registration

  • BRAINSResample
  • Transforms
  • BRAINSResize
  • BRAINSFit
  • PBNRR
  • Perform Metric Test

Specialized

  • ACPCTransform
  • Fiducial Registration
  • VBRAINSDemon Warp
  • BRAINSDemon Warp
  • Reformat

Segmentation

Specialized

  • EMSegment Command Line
  • Robust Statistics Segmenter
  • BRAINSROIAuto

Shape Analysis

Slicelets

Surface Models

  • Surface Toolbox
  • Model To Label Map
  • Merge Models
  • Probe Volume With Model
  • Grayscale Model Maker
  • Label Map Smoothing
  • Model Maker

Testing

  • Self Tests
  • CLIROITest
  • CLI4Test
  • Threshold Threading Test
  • Scoliosis Monitoring
  • Performance Tests
  • Slicer MRBTest

IGT Tests

  • Breach Warning Self Test

SlicerRT Tests

  • NAMIC Tutorial 2013June Self Test
  • Dicom Rt Import Self Test

TestCases

  • Slice Link Logic
  • Atlas Tests
  • RSNAQuant Tutorial
  • Volume Rendering Scene Close
  • test tractography display
  • slicer Close Crash Bug2590
  • Subject Hierarchy Generic Self Test
  • View Controllers Slice Interpolation Bug1926
  • Charting
  • Scene Performance
  • Markups In Compare Viewers Self Test
  • Cardiac Agatston Measures
  • fiber visibility crash2438
  • scene Import2428
  • RSNAVis Tutorial
  • JRC2013Vis
  • RSNA2012Prostate Demo
  • Add Many Markups Fiducial Test
  • Neurosurgical Planning Tutorial Markups Self Test
  • Colors Scalar Bar Self Test
  • Markups In Views Self Test
  • Subject Hierarchy Core Plugins Self Test
  • Change Tracker Self Test
  • Fiducial Layout Switch Bug1914
  • Slicer4Minute
  • label Toggle Bug2049

Unspecified

  • BRAINSDWICleanup

Utilities

BRAINS

  • BRAINSTransform Convert

Vascular Modeling Toolkit

Wizards

Work in Progress

Converters

Informatics

TestCases

  • Reporting Self Test
  • Label To DICOMSEGConverter Self Test

XNATSlicer

Modules by contributing organization

71 contributing organizations:

Asclepios INRIA

AZE R&D

  • JRC2013Vis

Boston Children's Hospital

Brigham and Women's Hospital

BWH

BWH, SPL

  • Crop Volume (loadable, built-in)

BWH, SUMS

BWH/UAB

CARMA

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China

CRTC

gatech

  • Robust Statistics Segmenter (cli, built-in)

GE

  • Add Scalar Volumes (cli, built-in)
  • Charting (scripted, built-in)
  • Checker Board Filter (cli, built-in)
  • Create DICOMSeries (cli, built-in)
  • Curvature Anisotropic Diffusion (cli, built-in)
  • Diffusion Tensor Test (cli, built-in)
  • DWIConvert (cli, built-in)
  • Execution Model Tour (cli, built-in)
  • Gradient Anisotropic Diffusion (cli, built-in)
  • Grayscale Fill Hole Image Filter (cli, built-in)
  • Grayscale Grind Peak Image Filter (cli, built-in)
  • Grayscale Model Maker (cli, built-in)
  • Histogram Matching (cli, built-in)
  • Label Map Smoothing (cli, built-in)
  • Median Image Filter (cli, built-in)
  • Model Maker (cli, built-in)
  • Model To Label Map (cli, built-in)
  • Multiply Scalar Volumes (cli, built-in)
  • Orient Scalar Volume (cli, built-in)
  • Otsu Threshold Image Filter (cli, built-in)
  • Pk Modeling (cli, bundled in Pk Modeling extension)
  • Resample Scalar Volume (cli, built-in)
  • Simple Region Growing Segmentation (cli, built-in)
  • Slice Link Logic (scripted, built-in)
  • Slicer4Minute (scripted, built-in)
  • Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
  • Subtract Scalar Volumes (cli, built-in)
  • View Controllers (loadable, built-in)
  • View Controllers Slice Interpolation Bug1926
  • Voting Binary Hole Filling Image Filter (cli, built-in)

Georgia Tech

IBM

  • Annotations (loadable, built-in)

Isomics

  • Atlas Tests
  • Binary Watershed Effect (scripted, bundled in IASEM extension)
  • Centerline Computation (scripted, bundled in VMTK extension)
  • Compare Volumes (scripted, bundled in CMFreg extension)
  • Data (loadable, built-in)
  • Data Probe (scripted, built-in)
  • DICOM (scripted, built-in)
  • Endoscopy (scripted, built-in)
  • fiber visibility crash2438
  • Fiber Bundle To Label Map (scripted, built-in)
  • label Toggle Bug2049
  • Landmark Registration (scripted, bundled in CMFreg extension)
  • Level Set Segmentation (scripted, bundled in VMTK extension)
  • Models (loadable, built-in)
  • Performance Tests
  • Reporting (loadable, bundled in Reporting extension)
  • RSNA2012Prostate Demo
  • RSNAQuant Tutorial
  • RSNAVis Tutorial
  • Sample Data (scripted, built-in)
  • scene Import2428
  • Self Tests
  • Simple Filters (scripted, built-in)
  • slicer Close Crash Bug2590
  • Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
  • Tractography Interactive Seeding (loadable, built-in)
  • Transforms (loadable, built-in)
  • Vector To Scalar Volume (scripted, built-in)
  • Vesselness Filtering (scripted, bundled in VMTK extension)
  • View Controllers (loadable, built-in)
  • Volume Rendering (loadable, built-in)
  • Volumes (loadable, built-in)

Isomics Inc.

  • DICOMDiffusion Volume Plugin
  • DICOMLongitudinal PETCTPlugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin
  • Slicer MRBTest
  • Threshold Threading Test

Isomics, pieper@isomics.com

Kingston General Hospital

Kitware

  • Cameras (loadable, built-in)
  • Colors (loadable, built-in)
  • Data (loadable, built-in)
  • Data Store (loadable, built-in)
  • Double Arrays (loadable, built-in)
  • Event Broker
  • Expert Automated Registration (cli, built-in)
  • Extension Wizard (scripted, built-in)
  • Extract Skeleton (cli, built-in)
  • Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
  • Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
  • fiber visibility crash2438
  • Fiducial Registration (cli, built-in)
  • Gaussian Blur Image Filter (cli, built-in)
  • Image Maker (cli, bundled in Image Maker extension)
  • label Toggle Bug2049
  • Matlab Commander (cli, bundled in Matlab Bridge extension)
  • Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
  • Models (loadable, built-in)
  • Multi Volume Explorer (loadable, built-in)
  • Multi Volume Importer (scripted, built-in)
  • Port Placement (scripted, bundled in Port Placement extension)
  • Reformat (loadable, built-in)
  • Sample Data (scripted, built-in)
  • Scene Performance (scripted, built-in)
  • Simple Filters (scripted, built-in)
  • Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
  • Threshold Scalar Volume (cli, built-in)
  • Tractography Display (loadable, built-in)
  • Transforms (loadable, built-in)
  • Units (loadable, built-in)
  • View Controllers (loadable, built-in)
  • Volume Rendering (loadable, built-in)
  • Volumes (loadable, built-in)
  • Welcome (loadable, built-in)

Kitware)

MGH

MGH, Boston

Moka Creative, LLC, kumar.sunil.p@gmail.com

MSC/NLM

Noware

Orobix

PerkLab at Queen's University

PerkLab, Queen's

PerkLab, Queen's University

PMH

PMH, Toronto

Princess Margaret Cancer Centre

Queen's

Queen's Universit

Queen's University

Queen's University) Jaime Garcia-Guevara (Queen's University

  • Breach Warning Self Test

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

RMP, PMH

  • Dicom Sro Import Plugin

SAIC-Frederick, NCI-Frederick

  • Volume Rendering (loadable, built-in)

SBU

SCI Institute

Shiga University of Medical Science in Japan

Shiga University of Medical Science, Japan, SPL

SINAPSE

SNR

SPL

SPL B&W Harvard

SPL, BWH

  • ACPCTransform (cli, built-in)
  • Annotations (loadable, built-in)
  • BSpline To Deformation Field (cli, built-in)
  • Cast Scalar Volume (cli, built-in)
  • Colors (loadable, built-in)
  • Data (loadable, built-in)
  • Diffusion Tensor Scalar Measurements (cli, built-in)
  • Diffusion Weighted Volume Masking (cli, built-in)
  • DTIexport (cli, built-in)
  • DTIimport (cli, built-in)
  • DWITo DTIEstimation (cli, built-in)
  • Fiducial Registration (cli, built-in)
  • Grayscale Model Maker (cli, built-in)
  • Image Label Combine (cli, built-in)
  • Mask Scalar Volume (cli, built-in)
  • Merge Models (cli, built-in)
  • Model Maker (cli, built-in)
  • Models (loadable, built-in)
  • Model To Label Map (cli, built-in)
  • Multi Volume Explorer (loadable, built-in)
  • Multi Volume Importer (scripted, built-in)
  • N4ITKBias Field Correction (cli, built-in)
  • PETStandard Uptake Value Computation (cli, built-in)
  • PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
  • Probe Volume With Model (cli, built-in)
  • Reporting (loadable, bundled in Reporting extension)
  • Robust Statistics Segmenter (cli, built-in)
  • Scene Views (loadable, built-in)
  • SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
  • TCIABrowser (scripted, bundled in TCIABrowser extension)
  • Test Grid Transform Registration (cli, built-in)
  • Threshold Scalar Volume (cli, built-in)
  • Tractography Label Map Seeding (cli, built-in)
  • View Controllers (loadable, built-in)
  • Volume Rendering (loadable, built-in)
  • Volumes (loadable, built-in)
  • Welcome (loadable, built-in)

SPL, BWH, UPenn

  • Merge Models (cli, built-in)

SUMS

Surgical Planning Lab

UAB

UHN, Toronto

Uiowa

  • DWIConvert (cli, built-in)

UIowa

  • DWIConvert (cli, built-in)

UNC

Univ of Michigan

Univ. of Iowa

  • DICOMPETSUVPlugin
  • DICOMRWVMPlugin

University 'Magna Graecia' of Catanzaro

University College Cork

University of Heidelberg

University of Iowa

University of Iowa) and Andrey Fedorov (SPL

UPenn

  • Annotations (loadable, built-in)
  • EMSegment (loadable, built-in)
  • N4ITKBias Field Correction (cli, built-in)
  • Scene Views (loadable, built-in)

Utah

UVa

  • DWIJoint Rician LMMSEFilter (cli, built-in)
  • DWIRician LMMSEFilter (cli, built-in)
  • DWIUnbiased Non Local Means Filter (cli, built-in)

UWA

WashU-St. Louis, dmarcus@wustl.edu

while at GE

Modules by contributing individual

185 contributing individuals:

/

  • Dicom Rt Import Plugin

a

  • Dicom Rt Import Plugin

Akila Viswanathan

Alan Morris

Alex Yarmakovich

  • Models (loadable, built-in)
  • Tractography Interactive Seeding (loadable, built-in)

Alex Yarmarkovich

Ali Ghayoor

  • BRAINSTransform Convert (cli, built-in)
  • Perform Metric Test (cli, built-in)

Alireza Mehrtash

Allen Tannenbaum

Amelie Meyer

Analysis Laboratory

Andinet Enquobahrie

Andras Lasso

Andreas Freudling

  • Volume Rendering (loadable, built-in)

Andrey Fedorov

Andriy Kot

Anonymous

  • CLIROITest (cli, built-in)
  • EMSegment Transform To New Format (cli, built-in)

Antonio Damato

Antonio Tristan Vega

Anuja Sharma

Arie Nakhmani

Atsushi Yamada

Beatriz Paniagua from Department of Orthodontics

Benjamin Long

  • Sample Data (scripted, built-in)

Benjamin Yvernault

Bill Lorensen

  • Add Scalar Volumes (cli, built-in)
  • Checker Board Filter (cli, built-in)
  • Create DICOMSeries (cli, built-in)
  • Curvature Anisotropic Diffusion (cli, built-in)
  • Diffusion Tensor Test (cli, built-in)
  • Execution Model Tour (cli, built-in)
  • Gradient Anisotropic Diffusion (cli, built-in)
  • Grayscale Fill Hole Image Filter (cli, built-in)
  • Grayscale Grind Peak Image Filter (cli, built-in)
  • Grayscale Model Maker (cli, built-in)
  • Histogram Matching (cli, built-in)
  • Median Image Filter (cli, built-in)
  • Model Maker (cli, built-in)
  • Multiply Scalar Volumes (cli, built-in)
  • Orient Scalar Volume (cli, built-in)
  • Otsu Threshold Image Filter (cli, built-in)
  • Resample Scalar Volume (cli, built-in)
  • Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
  • Subtract Scalar Volumes (cli, built-in)
  • Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
  • Voting Binary Hole Filling Image Filter (cli, built-in)

Brad Davis

  • EMSegment Command Line (cli, built-in)

Bradley Lowekamp

Brian Zenger

BWH

  • DICOMSegmentation Plugin
  • Multi Volume Importer Plugin

c

  • Dicom Rt Import Plugin

Carl-Fredrik Westin

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

Casey B Goodlett

  • Expert Automated Registration (cli, built-in)
  • Fiducial Registration (cli, built-in)

Charles Marion

  • Data Store (loadable, built-in)

Christian Baumgartner

Csaba Pinter

Dan Marcus

Daniel Blezek

  • Execution Model Tour (cli, built-in)

Daniel Haehn

Danny Perry

Demian Wassermann

Dinggang Shen

Dirk Padfield

  • Label Map Smoothing (cli, built-in)

Dominik Meier

  • Fiducial Registration (cli, built-in)

e

  • Dicom Rt Import Plugin

er

Ethan Ulrich

Eugene Kholmovski

ez

  • DWIJoint Rician LMMSEFilter (cli, built-in)
  • DWIRician LMMSEFilter (cli, built-in)
  • DWIUnbiased Non Local Means Filter (cli, built-in)

Fotis Drakopoulos

Francois Budin

Franklin King

Greg Gardner

Greg Harris

  • BRAINSDemon Warp (cli, built-in)
  • BRAINSResample (cli, built-in)
  • VBRAINSDemon Warp (cli, built-in)

Greg Sharp

Gregory Sharp

Guido Gerig

Guillaume Pernelle

Hans J. Johnson

  • BRAINSDemon Warp (cli, built-in)
  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)
  • BRAINSTransform Convert (cli, built-in)
  • VBRAINSDemon Warp (cli, built-in)

Hans Johnson

hans-johnson -at- uiowa.edu

  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)

http://www.psychiatry.uiowa.edu

  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)

i

  • Dicom Rt Import Plugin

Ipek Oguz

Ivan Kolesov

Jan Egger

Jayender Jagadeesan

Jean-Baptiste Berger

Jean-Christophe Fillion-Robin

Jennifer Andrea

Jessica Forbes

Jim Miller

  • Charting (scripted, built-in)
  • Pk Modeling (cli, bundled in Pk Modeling extension)
  • Simple Region Growing Segmentation (cli, built-in)
  • Slice Link Logic (scripted, built-in)
  • Slicer4Minute (scripted, built-in)
  • View Controllers (loadable, built-in)
  • View Controllers Slice Interpolation Bug1926

Johan Andruejol

  • Units (loadable, built-in)

John Evans

Jonathan Bronson

Josh Cates

Joy Matsui

  • DWIConvert (cli, built-in)

Julien Finet

  • Cameras (loadable, built-in)
  • Colors (loadable, built-in)
  • Data (loadable, built-in)
  • Double Arrays (loadable, built-in)
  • Event Broker
  • Image Maker (cli, bundled in Image Maker extension)
  • Models (loadable, built-in)
  • Multi Volume Explorer (loadable, built-in)
  • Multi Volume Importer (scripted, built-in)
  • Scene Performance (scripted, built-in)
  • Threshold Scalar Volume (cli, built-in)
  • Tractography Display (loadable, built-in)
  • Transforms (loadable, built-in)
  • Units (loadable, built-in)
  • Volume Rendering (loadable, built-in)
  • Volumes (loadable, built-in)

Julien Jomier

  • Gaussian Blur Image Filter (cli, built-in)

Junichi Tokuda

K

  • Dicom Rt Import Plugin

Kent Williams

Kent WIlliams

  • BRAINSStrip Rotation (cli, built-in)

Kevin Alex

Kevin Wang

Kilian Pohl

  • Annotations (loadable, built-in)
  • Change Tracker (scripted, bundled in Change Tracker extension)
  • EMSegment (loadable, built-in)
  • EMSegment Command Line (cli, built-in)
  • Scene Views (loadable, built-in)

Koichiro Murakami

Kyle Sunderl

l

  • Dicom Rt Import Plugin

Lauren Barber

Lauren O'Donnell

  • Fiber Bundle Label Select (cli, built-in)
  • Probe Volume With Model (cli, built-in)

Laurent Chauvin

Liang-Jia Zhu

Liangjia Zhu

Luca Antiga

Luis G. Torres

Luping Fang

m

  • Dicom Rt Import Plugin

Marc Niethammer

  • DWIRician LMMSEFilter (cli, built-in)

Marcel Prastawa prastawa@sci.utah.edu

  • ABC (cli, bundled in ABC extension)

Mark Scully

  • DWIConvert (cli, built-in)

Markus Van Tol

Martin Styner

Mason Winsauer

Matt Lougheed

Mattea Welch

Matthew Holden

Matthew S. Holden

Matthew Woehlke

  • Extension Wizard (scripted, built-in)

Michael Jeulin-Lagarrigue

  • Reformat (loadable, built-in)

Minjeong Kim

Nabgha Fahrat

Neuro Image Resarch

Nicholas Herlambang

  • JRC2013Vis

Nick Tustison

  • N4ITKBias Field Correction (cli, built-in)

Nicole Aucoin

  • ACPCTransform (cli, built-in)
  • Add Many Markups Fiducial Test
  • Annotations (loadable, built-in)
  • Cast Scalar Volume (cli, built-in)
  • Colors (loadable, built-in)
  • Colors Scalar Bar Self Test
  • Data (loadable, built-in)
  • Fiducial Layout Switch Bug1914
  • Grayscale Model Maker (cli, built-in)
  • Markups (loadable, built-in)
  • Markups In Compare Viewers Self Test
  • Markups In Views Self Test
  • Mask Scalar Volume (cli, built-in)
  • Merge Models (cli, built-in)
  • Model Maker (cli, built-in)
  • Models (loadable, built-in)
  • Model To Label Map (cli, built-in)
  • Neurosurgical Planning Tutorial Markups Self Test
  • PETStandard Uptake Value Computation (cli, built-in)
  • PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
  • Reporting (loadable, bundled in Reporting extension)
  • Scene Views (loadable, built-in)
  • SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
  • Threshold Scalar Volume (cli, built-in)
  • Volume Rendering Scene Close (scripted, built-in)
  • Volumes (loadable, built-in)

Nigel Goh

Nikos Chrisochoides

Olivier Clatz

p

  • Dicom Rt Import Plugin

Paolo Zaffino

Pat Marion

Paul Mercea

Pengdong Xiao

Peter Black

Peter Karasev

Peter Savadjiev

Pierre Seroul

  • Extract Skeleton (cli, built-in)

Pietro Nardelli

Please direct questions or suggestions to http://groups.google.com/group/plastimatch

Polina Goll

  • EMSegment Command Line (cli, built-in)

Qing Pan

R

  • Dicom Rt Import Plugin

r

  • Dicom Rt Import Plugin

Raul San Jose

  • Diffusion Tensor Scalar Measurements (cli, built-in)
  • DWITo DTIEstimation (cli, built-in)
  • Tractography Label Map Seeding (cli, built-in)

Rob MacLeod

Ron Kikinis

  • ACPCTransform (cli, built-in)
  • Cast Scalar Volume (cli, built-in)
  • Change Tracker (scripted, bundled in Change Tracker extension)
  • Crop Volume (loadable, built-in)
  • Mask Scalar Volume (cli, built-in)
  • Merge Models (cli, built-in)
  • Model Maker (cli, built-in)
  • Multi Volume Explorer (loadable, built-in)
  • Multi Volume Importer (scripted, built-in)
  • N4ITKBias Field Correction (cli, built-in)
  • PETStandard Uptake Value Computation (cli, built-in)
  • PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
  • Robust Statistics Segmenter (cli, built-in)
  • Surface Toolbox (scripted, built-in)
  • SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
  • Threshold Scalar Volume (cli, built-in)
  • View Controllers (loadable, built-in)
  • Volume Rendering (loadable, built-in)

Ross Whitaker

  • Label Map Smoothing (cli, built-in)

Ruifeng Chen

S

Salma Bengali

Sam Song

Santiago Aja Fern

  • DWIJoint Rician LMMSEFilter (cli, built-in)
  • DWIRician LMMSEFilter (cli, built-in)
  • DWIUnbiased Non Local Means Filter (cli, built-in)

Sebastien Barré

  • Cameras (loadable, built-in)

Sebastien Barre

  • EMSegment Command Line (cli, built-in)

Shigeyuki Naka

Soichiro Tani

Sonia Pujol

Stefan Lienhard

Stephen Aylward

  • Extract Skeleton (cli, built-in)
  • Gaussian Blur Image Filter (cli, built-in)

Stephen R Aylward

  • Expert Automated Registration (cli, built-in)

Steve Pieper

  • Atlas Tests
  • Binary Watershed Effect (scripted, bundled in IASEM extension)
  • Centerline Computation (scripted, bundled in VMTK extension)
  • Compare Volumes (scripted, bundled in CMFreg extension)
  • Data Probe (scripted, built-in)
  • DICOM (scripted, built-in)
  • DICOMDiffusion Volume Plugin
  • DICOMLongitudinal PETCTPlugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin
  • Endoscopy (scripted, built-in)
  • fiber visibility crash2438
  • Fiber Bundle To Label Map (scripted, built-in)
  • label Toggle Bug2049
  • Landmark Registration (scripted, bundled in CMFreg extension)
  • Level Set Segmentation (scripted, bundled in VMTK extension)
  • Multi Volume Explorer (loadable, built-in)
  • Multi Volume Importer (scripted, built-in)
  • Performance Tests
  • Reporting (loadable, bundled in Reporting extension)
  • RSNA2012Prostate Demo
  • RSNAQuant Tutorial
  • RSNAVis Tutorial
  • Sample Data (scripted, built-in)
  • scene Import2428
  • Self Tests
  • Simple Filters (scripted, built-in)
  • slicer Close Crash Bug2590
  • Slicer MRBTest
  • Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
  • Threshold Threading Test
  • Vector To Scalar Volume (scripted, built-in)
  • Vesselness Filtering (scripted, bundled in VMTK extension)
  • View Controllers (loadable, built-in)
  • Volumes (loadable, built-in)
  • Xnat Slicer (scripted, bundled in XNATSlicer extension)

Sunil Kumar

Sylvain Bouix

Sylvain Gouttard

t

  • Dicom Rt Import Plugin

Tamas Ungi

the University of North Carolina at Chapel Hill

Tina Kapur

Tobias Penzkofer

Tohru Tani

UNC Medical School

UofM School Of Dentistry

UofM School of Dentistry

Vince Magnotta

  • DWIConvert (cli, built-in)

Vincent A. Magnotta

  • BRAINSLabel Stats (cli, built-in)

Vincent Magnotta

  • BRAINSResample (cli, built-in)

Vinicius Boen

Vivek Narayan

Wendy Plesniak

Xiaodong Tao

  • DWIConvert (cli, built-in)
  • Model To Label Map (cli, built-in)

Xiaofeng Liu

Xiaojun Chen

y Wells

Yanling Liu

  • Volume Rendering (loadable, built-in)

Yi Gao

Yinglin Lee

  • Test Grid Transform Registration (cli, built-in)

Yingxuan Zhu

Yinpeng Li

Yixun Liu

Yogesh Rathi

Yong Zhang

  • Annotations (loadable, built-in)

Yumin Yuan

  • EMSegment Command Line (cli, built-in)

Yundi Shi

Modules by type

3 types:

cli

loadable

scripted

Modules by extension

55 extensions:

ABC

  • ABC (cli, bundled in ABC extension)

AirwaySegmentation

builtin

  • ACPCTransform (cli, built-in)
  • Add Scalar Volumes (cli, built-in)
  • Annotations (loadable, built-in)
  • BRAINSDemon Warp (cli, built-in)
  • BRAINSDWICleanup (cli, built-in)
  • BRAINSFit (cli, built-in)
  • BRAINSLabel Stats (cli, built-in)
  • BRAINSResample (cli, built-in)
  • BRAINSResize (cli, built-in)
  • BRAINSROIAuto (cli, built-in)
  • BRAINSStrip Rotation (cli, built-in)
  • BRAINSTransform Convert (cli, built-in)
  • BSpline To Deformation Field (cli, built-in)
  • Cameras (loadable, built-in)
  • Cast Scalar Volume (cli, built-in)
  • Charting (scripted, built-in)
  • Checker Board Filter (cli, built-in)
  • CLIROITest (cli, built-in)
  • Colors (loadable, built-in)
  • Create DICOMSeries (cli, built-in)
  • Crop Volume (loadable, built-in)
  • Curvature Anisotropic Diffusion (cli, built-in)
  • Data (loadable, built-in)
  • Data Probe (scripted, built-in)
  • Data Store (loadable, built-in)
  • DICOM (scripted, built-in)
  • DICOM2Full Brain Tractography (scripted, built-in)
  • Diffusion Tensor Scalar Measurements (cli, built-in)
  • Diffusion Tensor Test (cli, built-in)
  • Diffusion Weighted Volume Masking (cli, built-in)
  • Double Arrays (loadable, built-in)
  • DTIexport (cli, built-in)
  • DTIimport (cli, built-in)
  • DWIConvert (cli, built-in)
  • DWIJoint Rician LMMSEFilter (cli, built-in)
  • DWIRician LMMSEFilter (cli, built-in)
  • DWITo DTIEstimation (cli, built-in)
  • DWIUnbiased Non Local Means Filter (cli, built-in)
  • EMSegment (loadable, built-in)
  • EMSegment Command Line (cli, built-in)
  • EMSegment Quick (loadable, built-in)
  • EMSegment Transform To New Format (cli, built-in)
  • Endoscopy (scripted, built-in)
  • Execution Model Tour (cli, built-in)
  • Expert Automated Registration (cli, built-in)
  • Extension Wizard (scripted, built-in)
  • Extract Skeleton (cli, built-in)
  • Fiber Bundle Label Select (cli, built-in)
  • Fiber Bundle To Label Map (scripted, built-in)
  • Fiducial Registration (cli, built-in)
  • Gaussian Blur Image Filter (cli, built-in)
  • Gradient Anisotropic Diffusion (cli, built-in)
  • Grayscale Fill Hole Image Filter (cli, built-in)
  • Grayscale Grind Peak Image Filter (cli, built-in)
  • Grayscale Model Maker (cli, built-in)
  • Histogram Matching (cli, built-in)
  • Image Label Combine (cli, built-in)
  • Label Map Smoothing (cli, built-in)
  • Markups (loadable, built-in)
  • Mask Scalar Volume (cli, built-in)
  • Median Image Filter (cli, built-in)
  • Merge Models (cli, built-in)
  • Model Maker (cli, built-in)
  • Models (loadable, built-in)
  • Model To Label Map (cli, built-in)
  • Multiply Scalar Volumes (cli, built-in)
  • Multi Volume Explorer (loadable, built-in)
  • Multi Volume Importer (scripted, built-in)
  • N4ITKBias Field Correction (cli, built-in)
  • Open IGTLink IF (loadable, built-in)
  • Orient Scalar Volume (cli, built-in)
  • Otsu Threshold Image Filter (cli, built-in)
  • Perform Metric Test (cli, built-in)
  • PETStandard Uptake Value Computation (cli, built-in)
  • Probe Volume With Model (cli, built-in)
  • Reformat (loadable, built-in)
  • Resample DTIVolume (cli, built-in)
  • Resample Scalar Vector DWIVolume (cli, built-in)
  • Resample Scalar Volume (cli, built-in)
  • Robust Statistics Segmenter (cli, built-in)
  • Sample Data (scripted, built-in)
  • Scene Performance (scripted, built-in)
  • Scene Views (loadable, built-in)
  • Simple Filters (scripted, built-in)
  • Simple Region Growing Segmentation (cli, built-in)
  • Slice Link Logic (scripted, built-in)
  • Slicer4Minute (scripted, built-in)
  • Subject Hierarchy (loadable, built-in)
  • Subtract Scalar Volumes (cli, built-in)
  • Surface Toolbox (scripted, built-in)
  • Test Grid Transform Registration (cli, built-in)
  • Threshold Scalar Volume (cli, built-in)
  • Tractography Display (loadable, built-in)
  • Tractography Interactive Seeding (loadable, built-in)
  • Tractography Label Map Seeding (cli, built-in)
  • Transforms (loadable, built-in)
  • Units (loadable, built-in)
  • VBRAINSDemon Warp (cli, built-in)
  • Vector To Scalar Volume (scripted, built-in)
  • View Controllers (loadable, built-in)
  • Volume Rendering (loadable, built-in)
  • Volume Rendering Scene Close (scripted, built-in)
  • Volumes (loadable, built-in)
  • Voting Binary Hole Filling Image Filter (cli, built-in)
  • Welcome (loadable, built-in)

Cardiac_MRI_Toolkit

CardiacAgastonMeasures

CarreraSlice

CBC_3D_I2MConversion

ChangeTracker

CleaverExtension

CMFreg

CornerAnnotation

CurveMaker

DiceComputation

DTIAtlasFiberAnalyzer

ErodeDilateLabel

FastGrowCutEffect

FinslerTractography

GelDosimetryAnalysis

GyroGuide

IASEM

iGyne

ImageMaker

IntensitySegmenter

LAScarSegmenter

LongitudinalPETCT

MABMIS

MatlabBridge

MeshToLabelMap

MultidimData

NeedleFinder

OpenCAD

PBNRR

PercutaneousApproachAnalysis

PerkTutor

PETDICOMExtension

PkModeling

PortPlacement

PyDevRemoteDebug

Reporting

ResectionPlanner

Scoliosis

SegmentationAidedRegistration

SlicerExtension-VMTK

SlicerIGT

SlicerRT

SlicerToKiwiExporter

SobolevSegmenter

SwissSkullStripper

TCIABrowser

ThingiverseBrowser

TrackerStabilizer

UKFTractography

VolumeClip

WindowLevelEffect

XNATSlicer

Extensions by name

54 extensions:

Extensions by category

25 categories:

Cardiac

Cardiac MRI toolkit

Converters

Developer Tools

Diffusion

Editor Effects

Exporter

Filtering

Morphology

IGT

Informatics

Mesh Generation

Microscopy

Multidimensional data

Quantification

Radiotherapy

Registration

Remote

Scoliosis

Segmentation

Shape Analysis

Tractography

Training

Utilities

Vascular Modeling Toolkit

Wizards

Extensions by contributing organization

54 contributing organizations:

Asclepios INRIA) and Nikos Chrisochoides (CRTC

Boston Childrens Hospital

Brigham and Women's Hospital

BWH

BWH & MGH

BWH, SPL

BWH/UAB

CARMA

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China

Crisalix

CRTC

Department of Neurosurgery, PLA General Hospital, Beijing, China

Department of Orthodontics, UNC

GE

GE GLobal Research

GT

Isomics

Kitware

Massachusetts General Hospital

Moka Creative LLC, Washington University in St. Louis

NIRAL, UNC

Noware

Orobix

PerkLab at Queen's University

PerkLab, Queen's

PerkLab, Queen's University

PMH

Queen's University

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

SBU

SCI Institute

Shiga University of Medical Science, Japan

Shiga University of Medical Science, Japan, SPL

SPL

SPL and BWH

SPL B&W Harvard

SRI

Stony Brook University

Surgical Planning Lab

UAB

UIowa

UNC

Univ of Michigan

University College Cork

University of Bern

University of Heidelberg

University of Iowa

University of Utah

Utah

UWA

Washington University in St. Louis

yogesh@bwh.harvard.edu

Extensions by contributing individual

125 contributing individuals:

Akila Viswanathan

Alan Morris

Alex Yarmarkovich

Alireza Mehrtash

Allen Tannenbaum

Andinet Enquobahrie

Andras Lasso

Andre Mastmeyer

Andrey Fedorov

Andriy Fedorov

Andriy Kot

Antonio Damato

Antonio Tristan-Vega

Arie Nakhmani

Arnaud Gelas

Atsushi Yamada

Beatriz Paniagua

Bill Lorensen

Bradley Lowekamp

Brig Bagley

Carl-Fredrik Westin

Christian Baumgartner

Csaba Pinter

Dan Marcus

Daniel Haehn

Danny Perry

Demian Wasssermann

Dinggang Shen

Ethan Ulrich

Eugene Kholmovski

Fotis Drakopoulos

Francois Budin

Franklin King

Greg Gardner

Greg Sharp

Guillaume Pernelle

Hans Johnson

Ipek Oguz

Ivan Kolesov

Jan Egger

Jayender Jagadeesan

Jean-Christophe Fillion-Robin

Jennifer Andrea

Jessica Forbes

Jiashu Zhang

Jim Miller

Jonathan Bronson

Josh Cates

Julien Finet

Junichi Tokuda

Karl Fritscher

Kent Williams

Kevin Wang

Kilian Pohl

Koichiro Murakami

Lauren Barber

Laurent Chauvin

Liang-Jia Zhu

Liangjia Zhu

Luca Antiga

Luis G. Torres

Luping Fang

Mahnaz Maddah

Manson Winsauer

Marcel Prastawa

Martin Styner

Matt Lougheed

Mattea Welch

Matthew Holden

Matthew S. Holden

Mauricio Reyes

Ming-ching Chang

Minjeong Kim

Nabgha Fahrat

Nicole Aucoin

Nigel Goh

Nikos Chrisochoides

Olivier Clatz

Pat Marion

Patricio Vela

Paul Mercea

Pengdong Xiao

Peter Black

Peter Karasev

Peter Savadjiev

Pietro Nardelli

Qing Pan

Rick Herrick

Rob MacLeod

Ron Kikinis

Ruifeng Chen

Ryan Eckbo

S

Salma Bengali

Sam Song

Stefan Bauer

Stefan Lienhard

Steve Pieper

Sunil Kumar

Sylvain Bouix

Tamas Ungi

Thomas Fejes

Tina Kapur

Tobias Penzkofer

Vinicius Boen

Vivek Narayan

Xiaofeng Liu

Xiaojun Chen

Xiaolei Chen

y Wells

Yi Gao

Yingxuan Zhu

Yinpeng Li

Yixun Liu

Yogesh Rathi

Yundi Shi