Difference between revisions of "Documentation/4.0"
From Slicer Wiki
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==Registration== | ==Registration== | ||
− | *[[Documentation/4.0/Modules/BSplineDeformableRegistration|BSpline Deformable Registration]] | + | *[[Documentation/4.0/Modules/BSplineDeformableRegistration|BSpline Deformable Registration]][[image:UnderConstruction.png|tumb|10px]] |
− | *[[Documentation/4.0/Modules/AffineRegistration|Affine Registration]] (Daniel Blezek) | + | *[[Documentation/4.0/Modules/AffineRegistration|Affine Registration]] (Daniel Blezek) [[image:UnderConstruction.png|tumb|10px]] |
− | *[[Documentation/4.0/Modules/LinearRegistration|Linear Registration]] | + | *[[Documentation/4.0/Modules/LinearRegistration|Linear Registration]] [[image:UnderConstruction.png|tumb|10px]] |
− | *[[Documentation/4.0/Modules/RigidRegistration|Rigid Registration]] (Jim Miller) | + | *[[Documentation/4.0/Modules/RigidRegistration|Rigid Registration]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] |
− | *[[Documentation/4.0/Modules/TransformFromFiducials| Transform from Fiducials]] (Casey Goodlett) | + | *[[Documentation/4.0/Modules/TransformFromFiducials| Transform from Fiducials]] (Casey Goodlett) [[image:UnderConstruction.png|tumb|10px]] |
==Segmentation== | ==Segmentation== | ||
− | *[[Documentation/4.0/Modules/OtsuThresholdSegmentation|Otsu Threshold Segmentation]] (Bill Lorensen) | + | *[[Documentation/4.0/Modules/OtsuThresholdSegmentation|Otsu Threshold Segmentation]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] |
− | *[[Documentation/4.0/Modules/RobustStatisticsSegmenter|Robust Statistics Segmentation]] (Yi Gao) | + | *[[Documentation/4.0/Modules/RobustStatisticsSegmenter|Robust Statistics Segmentation]] (Yi Gao) [[image:UnderConstruction.png|tumb|10px]] |
==Filtering== | ==Filtering== | ||
− | *[[Documentation/4.0/Modules/N4ITKBiasFieldCorrection | N4ITK Bias Field Correction]] (Andrey Fedorov) | + | *[[Documentation/4.0/Modules/N4ITKBiasFieldCorrection | N4ITK Bias Field Correction]] (Andrey Fedorov) [[image:UnderConstruction.png|tumb|10px]] |
− | *[[Documentation/4.0/Modules/MRIBiasFieldCorrection|MRI Bias Field Correction]] (Sylvain Jaume) | + | *[[Documentation/4.0/Modules/MRIBiasFieldCorrection|MRI Bias Field Correction]] (Sylvain Jaume) [[image:UnderConstruction.png|tumb|10px]] |
− | *[[Documentation/4.0/Modules/Threshold|Threshold]] (Nicole Aucoin) | + | *[[Documentation/4.0/Modules/Threshold|Threshold]] (Nicole Aucoin) [[image:UnderConstruction.png|tumb|10px]] |
− | *[[Documentation/4.0/Modules/CheckerBoard|CheckerBoard]] (Bill Lorensen) | + | *[[Documentation/4.0/Modules/CheckerBoard|CheckerBoard]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] |
− | *[[Documentation/4.0/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling]] (Jim Miller) | + | *[[Documentation/4.0/Modules/HistogramMatching|Histogram Matching]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] |
− | *[[Documentation/4.0/Modules/ImageLabelCombine| | + | *[[Documentation/4.0/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] |
+ | *[[Documentation/4.0/Modules/ImageLabelCombine|Image Label Combine]] (Alex Yarmarkovich) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *[[Documentation/4.0/Modules/OtsuThresholdImageFilter|Otsu Threshold]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *Resample Tools | ||
+ | **[[Documentation/4.0/Modules/ResampleVolume|Resample Volume]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] | ||
*Denoising | *Denoising | ||
− | **[[Documentation/4.0/Modules/GaussianBlurImageFilter|Gaussian Blur]] (Stephen Aylward) | + | **[[Documentation/4.0/Modules/GaussianBlurImageFilter|Gaussian Blur]] (Stephen Aylward) [[image:UnderConstruction.png|tumb|10px]] |
− | **[[Documentation/4.0/Modules/GradientAnisotropicDiffusion | Gradient Anisotropic Diffusion]] (Jim Miller) | + | **[[Documentation/4.0/Modules/GradientAnisotropicDiffusion | Gradient Anisotropic Diffusion]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] |
− | **[[Documentation/4.0/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] (Bill Lorensen) | + | **[[Documentation/4.0/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] |
− | **[[Documentation/4.0/Modules/MedianImageFilter|Median Image Filter]] (Bill Lorensen) | + | **[[Documentation/4.0/Modules/MedianImageFilter|Median Image Filter]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] |
*Morphology | *Morphology | ||
− | **[[Documentation/4.0/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole]] (Bill Lorensen) | + | **[[Documentation/4.0/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] |
− | **[[Documentation/4.0/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak]] (Bill Lorensen) | + | **[[Documentation/4.0/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] |
*Arithmetic | *Arithmetic | ||
− | **[[Documentation/4.0/Modules/Add| Add Images]] (Bill Lorensen) | + | **[[Documentation/4.0/Modules/Add| Add Images]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] |
− | **[[Documentation/4.0/Modules/Cast| Cast Image]] (Nicole Aucoin) | + | **[[Documentation/4.0/Modules/Cast| Cast Image]] (Nicole Aucoin) [[image:UnderConstruction.png|tumb|10px]] |
− | **[[Documentation/4.0/Modules/Mask| Mask Image]] (Nicole Aucoin) | + | **[[Documentation/4.0/Modules/Mask| Mask Image]] (Nicole Aucoin) [[image:UnderConstruction.png|tumb|10px]] |
− | **[[Documentation/4.0/Modules/Multiply| Multiply Images]] (Bill Lorensen) | + | **[[Documentation/4.0/Modules/Multiply| Multiply Images]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] |
− | **[[Documentation/4.0/Modules/Subtract| Subtract Images]] (Bill Lorensen) | + | **[[Documentation/4.0/Modules/Subtract| Subtract Images]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] |
==Surface Models== | ==Surface Models== | ||
− | *[[Documentation/ | + | *[[Documentation/4.0/Modules/ModelMaker| Model Maker]] (Nicole Aucoin) [[image:UnderConstruction.png|tumb|10px]] |
− | + | *[[Documentation/4.0/Modules/MergeModels| Merge Models]] (Nicole Aucoin) [[image:UnderConstruction.png|tumb|10px]] | |
+ | *[[Documentation/4.0/Modules/GrayscaleModelMaker| Grayscale Model Maker]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *[[Documentation/4.0/Modules/PolyDataToLabelmap| PolyData To LabelMap]] (Nicole Aucoin) [[image:UnderConstruction.png|tumb|10px]] | ||
==Converters== | ==Converters== | ||
− | *[[Documentation/4.0/Modules/ImageReadDicomWrite| Create a Dicom Series]] (Bill Lorensen) | + | *[[Documentation/4.0/Modules/ImageReadDicomWrite| Create a Dicom Series]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] |
− | + | *[[Documentation/4.0/Modules/OrientImage| Orient Image]] (Bill Lorensen) [[image:UnderConstruction.png|tumb|10px]] | |
− | ==Diffusion== | + | *[[Documentation/4.0/Modules/DicomToNrrdConverter|Dicom to Nrrd Converter]] (Xiaodong Tao) [[image:UnderConstruction.png|tumb|10px]] |
+ | ==Diffusion== | ||
==Endoscopy== | ==Endoscopy== | ||
− | *[[Documentation/4.0/Modules/Endoscopy|Endoscopy]] (Steve Pieper) | + | *[[Documentation/4.0/Modules/Endoscopy|Endoscopy]] (Steve Pieper) [[image:UnderConstruction.png|tumb|10px]] |
==Informatics== | ==Informatics== | ||
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==Quantification== | ==Quantification== | ||
− | *[[Documentation/4.0/Modules/LabelStatistics|Label Statistics]] (Steve Pieper) | + | *[[Documentation/4.0/Modules/LabelStatistics|Label Statistics]] (Steve Pieper) [[image:UnderConstruction.png|tumb|10px]] |
− | *[[Documentation/4.0/Modules/SUVComputation|SUV Computation]] | + | *[[Documentation/4.0/Modules/SUVComputation|SUV Computation]] [[image:UnderConstruction.png|tumb|10px]] |
==Developer Tools== | ==Developer Tools== | ||
− | *[[Documentation/{{documentation/version}}/Modules/Cameras|Cameras]] (Julien Finet) | + | *[[Documentation/{{documentation/version}}/Modules/Cameras|Cameras]] (Julien Finet) [[image:UnderConstruction.png|tumb|10px]] |
− | *[[Documentation/{{documentation/version}}/Modules/EventBroker|EventBroker]] (Julien Finet) | + | *[[Documentation/{{documentation/version}}/Modules/EventBroker|EventBroker]] (Julien Finet) [[image:UnderConstruction.png|tumb|10px]] |
=Extensions= | =Extensions= |
Revision as of 19:55, 3 November 2011
Home < Documentation < 4.03D Slicer | |
---|---|
Description | |
Research platform for the analysis and visualization of medical images, including image guided therapy. | |
Free and extensible open source package. | |
Multi-platform | Linux, MacOSX, Windows |
Version | 4.0 |
License | Contribution and Software License Agreement |
4.0 3.6 3.5 3.4 3.2 ALL VERSIONS
Main GUI
Mailing Lists
|
Module Categories
|
Miscellaneous
Developers Corner
|
The 4.0 release of 3D Slicer contains significant changes both to the organization of the software and to the functionality. Please check the Announcement page for more details. The community contributing to Slicer 4.0 is acknowledged here. |
For information on how to obtain Slicer 4.0 please go to the Download Pages. |
Requirements for Modules
- The module is feature complete, i.e. it does everything that it advertises
- The module has a test. See here for more information.
- The module is fully documented. See here for the end-user documentation template.
- The module complies with Rons rules for tool and the style guide lines, including color palette.
- Use the logos in the Logo Gallery
Modules by Category
Core Modules
- Annotations (Nicole Aucoin)
- Colors (Nicole Aucoin)
- Data (Julien Finet)
- DICOM (Steve Pieper)
- Editor (Steve Pieper)
- Models (Nicole Aucoin)
- SceneViews (Nicole Aucoin)
- Transforms (Alex Yarmarkovich)
- View Controllers (Jim Miller)
- Volumes (Steve Pieper)
- Volume Rendering (Julien Finet)
- Welcome to Slicer (Wendy Plesniak)
Registration
- BSpline Deformable Registration
- Affine Registration (Daniel Blezek)
- Linear Registration
- Rigid Registration (Jim Miller)
- Transform from Fiducials (Casey Goodlett)
Segmentation
- Otsu Threshold Segmentation (Bill Lorensen)
- Robust Statistics Segmentation (Yi Gao)
Filtering
- N4ITK Bias Field Correction (Andrey Fedorov)
- MRI Bias Field Correction (Sylvain Jaume)
- Threshold (Nicole Aucoin)
- CheckerBoard (Bill Lorensen)
- Histogram Matching (Bill Lorensen)
- Voting Binary Hole Filling (Jim Miller)
- Image Label Combine (Alex Yarmarkovich)
- Otsu Threshold (Bill Lorensen)
- Resample Tools
- Resample Volume (Bill Lorensen)
- Denoising
- Gaussian Blur (Stephen Aylward)
- Gradient Anisotropic Diffusion (Jim Miller)
- Curvature Anisotropic Diffusion (Bill Lorensen)
- Median Image Filter (Bill Lorensen)
- Morphology
- Grayscale Fill Hole (Bill Lorensen)
- Grayscale Grind Peak (Bill Lorensen)
- Arithmetic
- Add Images (Bill Lorensen)
- Cast Image (Nicole Aucoin)
- Mask Image (Nicole Aucoin)
- Multiply Images (Bill Lorensen)
- Subtract Images (Bill Lorensen)
Surface Models
- Model Maker (Nicole Aucoin)
- Merge Models (Nicole Aucoin)
- Grayscale Model Maker (Bill Lorensen)
- PolyData To LabelMap (Nicole Aucoin)
Converters
- Create a Dicom Series (Bill Lorensen)
- Orient Image (Bill Lorensen)
- Dicom to Nrrd Converter (Xiaodong Tao)
Diffusion
Endoscopy
- Endoscopy (Steve Pieper)
Informatics
Quantification
- Label Statistics (Steve Pieper)
- SUV Computation
Developer Tools
- Cameras (Julien Finet)
- EventBroker (Julien Finet)
Extensions
Introduction
- Slicer Extensions are the "on-ramp" to the Slicer "highway". slicer Extensions provide a voluntary mechanism for anybody, including third parties, to extend the functionality of 3d Slicer.
- While the Slicer license is suggested for extensions, it is not required. Please review the documentation of the extension carefully as some extensions might have a "non-Slicer" license.
- For a subset of extensions, you can use the extension wizard in Slicer to find their webpages and to install/uninstall individual extensions.
- In case of problems with extensions, please talk directly to the developers of the extensions.
- Information for developers can be found here. See here for the end-user documentation template.
- In Slicer 4, all new modules will begin as "Immature Extensions". They will progress to the status of "Mature Extensions", when they meet all the criteria listed below. In order to become part of the main Slicer distribution a discussion with the Slicer core team will have to be initiated after reaching the mature extension status. While extensions can be made available under many licenses, the main Slicer distribution will contain ONLY code under the slicer license, with no known IP liabilities.
Collections
Collections are groups of extensions that can be downloaded in a single operation. You can think of them as the equivalent to a playlist.
Table Of Extensions
Caption for the table of extensions
Distributed under the Slicer License