Difference between revisions of "Documentation/4.5/Extensions/SlicerHeart"

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*[[Documentation/{{documentation/version}}/Modules/Philips4dUsDicomPatcher|Philips 4D US DICOM patcher]]
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*[[Documentation/{{documentation/version}}/Modules/DicomUltrasoundPlugin|Heart ultrasound DICOM plugin]]
 
*[[Documentation/{{documentation/version}}/Modules/ValveView|Valve view]]
 
*[[Documentation/{{documentation/version}}/Modules/ValveView|Valve view]]
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*[[Documentation/{{documentation/version}}/Modules/DicomUltrasoundPlugin|Heart ultrasound DICOM plugin]]
 
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*[[Documentation/{{documentation/version}}/Modules/Philips4dUsDicomPatcher|Philips 4D US DICOM patcher]]
 
 
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|[[Image:BasicHeartView.png|thumb|340px|Visualization of 4D ultrasound image]]
 
|[[Image:BasicHeartView.png|thumb|340px|Visualization of 4D ultrasound image]]
 
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== Setup ==
 
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* Install Slicer
 
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* Start Slicer, install SlicerHeart extension from the Extensions Manager
 
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* Install the pre-requisite Sequences module when asked
 
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* Restart Slicer
 
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== Patch/convert non-compliant Philips Cartesian 4D US DICOM files ==
 
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* Go to Module: Cardiac / Philips 4D US DICOM patcher
 
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* Select the directory where your Philips-exported files are located as ''Input DICOM directory''
 
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* Select an empty directory as ''Output directory'', output of the conversion/fix operation will be stored there
 
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* Check ''Export to DICOM files'' checkbox if you want to generate corrected DICOM files that can be loaded into standard-compliant DICOM viewers
 
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* Check ''Anonymize DICOM files'' checkbox if you want to remove patient information from the output files
 
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* Check ''Export to NRRD files'' checkbox if you want to store the output in non-DICOM file format
 
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* Click Patch
 
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== Load patched DICOM files ==
 
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* Drag-and-drop the directory that contains fixed DICOM files on the Slicer main window
 
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* Slicer will show a popup, keep the default ''Load directory into DICOM database'' option and click OK
 
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* Select ''Copy'' if your data resides on a removable drive or temporary directory; select ''Add link'' if you don't want to make a copy of your files into the Slicer DICOM database (just a link will be added to existing files)
 
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* Click on the patient name of the data that you just imported
 
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* Click ''Load'' to load the data
 
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== Load nrrd files ==
 
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* Drag-and-drop the nrrd file on the Slicer main window
 
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* In the displayed ''Add data'' dialog select ''Volume sequence'' in the ''Description'' column
 
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* Click ''OK'' to load the data
 
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== Review loaded 4D ultrasound images ==
 
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* When a 4D volume sequence is loaded the sequence browser toolbar is displayed (if not, then right-click the toolbar area and click ''Sequence browser'')
 
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* Select a sequence in the sequence browser toolbar, click play, pause, prev/next frame, etc. to view the sequence
 
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Revision as of 20:52, 11 January 2016

Home < Documentation < 4.5 < Extensions < SlicerHeart


For the latest Slicer documentation, visit the read-the-docs.



Introduction and Acknowledgements

  • Authors: Andras Lasso (PerkLab), Steve Pieper (Isomics), Adam Rankin (Robarts), Matthew Jolley (CHOP)
  • Contacts:
    • Andras Lasso, <email>lasso@queensu.ca</email>
    • Matthew Jolley, <email>jolleym@email.chop.edu</email>
  • Website: https://github.com/SlicerHeart/SlicerHeart
  • License: Slicer license
  • Download/install: install 3D Slicer, start 3D Slicer, open the Extension Manager, install the Sequences and SlicerHeart extensions

Extension Description

SlicerHeart Logo 128x128.png

  • SlicerHeart extension contains modules useful for cardiac analysis and intervention planning and guidance
  • The extension is under development and currently includes the following features:
    • Fixing and importing of Philips 4D ultrasound images
    • Tool for visualization of heart valves

Modules

Use Cases

Visualization of 4D ultrasound image

Similar Extensions

References

Information for Developers

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