Difference between revisions of "Documentation/4.1/Modules"
From Slicer Wiki
Line 1: | Line 1: | ||
− | {{:Category:Documentation/ | + | =Modules by Category= |
+ | ==Core Modules== | ||
+ | *[[Documentation/{{documentation/version}}/Modules/Annotations|Annotations]] (Nicole Aucoin) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/Colors|Colors]] (Nicole Aucoin) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/Data|Data]] (Julien Finet) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/DICOM|DICOM]] (Steve Pieper) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/Editor|Editor]] (Steve Pieper) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/Models|Models]] (Nicole Aucoin) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/SceneViews|SceneViews]] (Nicole Aucoin) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/Transforms|Transforms]] (Alex Yarmarkovich) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/ViewControllers|View Controllers]] (Jim Miller) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/Volumes|Volumes]] (Steve Pieper) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/VolumeRendering|Volume Rendering]] (Julien Finet) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/SlicerWelcome|Welcome to Slicer]] (Wendy Plesniak) | ||
+ | |||
+ | ==Wizards== | ||
+ | *[[Documentation/{{documentation/version}}/Modules/ChangeTracker|ChangeTracker]] (Andrey Fedorov) | ||
+ | |||
+ | ==Informatics== | ||
+ | *[[Documentation/{{documentation/version}}/Modules/SampleData|Sample Data]] (Steve Pieper) | ||
+ | |||
+ | ==Registration== | ||
+ | *[[:Category:Documentation/{{documentation/version}}/Modules/Registration|Introduction to Registration]] (Dominik Meier) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/BRAINSFit|General Brainsfit Registration]] (Hans Johnson) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/BRAINSResample|Resample Image (BRAINS)]] (Hans Johnson) | ||
+ | *Specialized | ||
+ | **[[Documentation/{{documentation/version}}/Modules/ACPCTransform|ACPC Transform]] (Nicole Aucoin) | ||
+ | **[[Documentation/{{documentation/version}}/Modules/BRAINSDemonWarp|Demon Registration (BRAINS)]] (Hans Johnson) | ||
+ | **[[Documentation/{{documentation/version}}/Modules/FiducialRegistration|Fiducial Registration]] (Stephen Aylward) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | **Vector Demon Registration (Hans Johnson) | ||
+ | **[[Documentation/{{documentation/version}}/Modules/Reformat|Reformat]] (Michael Jeulin-Lagarrigue) | ||
+ | |||
+ | ==Segmentation== | ||
+ | *[[Documentation/{{documentation/version}}/Modules/EMSegment Easy|EMSegment Easy (no atlas)]] (Kilian Pohl) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/EMSegmenter|EMSegment (with atlas)]] (Kilian Pohl) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] (Jim Miller, Harini Veeraraghavan) | ||
+ | *Specialized | ||
+ | **[[Documentation/{{documentation/version}}/Modules/EMSegment Command-line | EMSegment Command-line]] (Kilian Pohl) | ||
+ | **[[Documentation/{{documentation/version}}/Modules/ForegroundMasking|Foreground Masking (BRAINS)]] (Hans Johnson) | ||
+ | **[[Documentation/{{documentation/version}}/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] (Yi Gao) | ||
+ | |||
+ | ==Quantification== | ||
+ | *[[Documentation/{{documentation/version}}/Modules/DataProbe|Data Probe]] (Steve Pieper) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/LabelStatistics|Label Statistics]] (Steve Pieper) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/PETStandardUptakeValueComputation|PET Standard Uptake Value Computation]] (Nicole Aucoin) | ||
+ | * Change quantification | ||
+ | ** [[Documentation/{{documentation/version}}/Modules/IntensityDifferenceMetric|Intensity Difference Metric]] (Andrey Fedorov) | ||
+ | |||
+ | ==Diffusion== | ||
+ | *DWI to Full Brain Tractography (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *Denoising | ||
+ | **[[Documentation/{{documentation/version}}/Modules/DWIJointRicianLMMSEFilter|DWI Joint Rician LMMSE Image Filter]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | **[[Documentation/{{documentation/version}}/Modules/DWIRicianLMMSEFilter|DWI Rician LMMSE Filter]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *Tractography | ||
+ | **[[Documentation/{{documentation/version}}/Modules/TractographyDisplay|Tractography Display]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | **[[Documentation/{{documentation/version}}/Modules/TractographyFiducialSeeding|Tractography Fiducial Seeding]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | **[[Documentation/{{documentation/version}}/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]] (Demian Wasserman) | ||
+ | *Utilities | ||
+ | **[[Documentation/{{documentation/version}}/Modules/DWIToDTIEstimation|DWI To DTI Estimation]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | **[[Documentation/{{documentation/version}}/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]] (Demian Wasserman) | ||
+ | **[[Documentation/{{documentation/version}}/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | **[[Documentation/{{documentation/version}}/Modules/ResampleDTIVolume|Resample DTI Volume]] (Demian Wasserman) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *Data Conversion | ||
+ | **[[Documentation/{{documentation/version}}/Modules/DTIImport|DTIImport]][[image:UnderConstruction.png|tumb|10px]] (Sonia Pujol) | ||
+ | **[[Documentation/{{documentation/version}}/Modules/DTIExport|DTIExport]][[image:UnderConstruction.png|tumb|10px]] (Sonia Pujol) | ||
+ | |||
+ | ==IGT== | ||
+ | *[[Documentation/{{documentation/version}}/Modules/OpenIGTLinkIF| OpenIGTLink IF]] (Junichi Tokuda) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | |||
+ | ==Filtering== | ||
+ | *[[Documentation/{{documentation/version}}/Modules/N4ITKBiasFieldCorrection | N4ITK Bias Field Correction]] (Andrey Fedorov) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/CheckerBoardFilter|CheckerBoard Filter]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *[[Documentation/{{documentation/version}}/Modules/ExtractSkeleton|Extract Skeleton]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *[[Documentation/{{documentation/version}}/Modules/HistogramMatching|Histogram Matching]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *[[Documentation/{{documentation/version}}/Modules/ImageLabelCombine|Image Label Combine]] (Alex Yarmarkovich) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/ResampleScalarVectorDWIVolume|Resample Scalar/Vector/DWI Volume]] (Francois Budin) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *[[Documentation/{{documentation/version}}/Modules/ThresholdScalarVolume|Threshold Scalar Volume]] (Nicole Aucoin) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *Arithmetic | ||
+ | **[[Documentation/{{documentation/version}}/Modules/AddScalarVolumes|Add Scalar Volumes]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | **[[Documentation/{{documentation/version}}/Modules/CastScalarVolume| Cast Scalar Volume]] (Nicole Aucoin) | ||
+ | **[[Documentation/{{documentation/version}}/Modules/MaskScalarVolume| Mask Scalar Volume]] (Nicole Aucoin) | ||
+ | **[[Documentation/{{documentation/version}}/Modules/MultiplyScalarVolumes| Multiply Scalar Volumes]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | **[[Documentation/{{documentation/version}}/Modules/SubtractScalarVolumes| Subtract Scalar Volumes]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *Denoising | ||
+ | **[[Documentation/{{documentation/version}}/Modules/GradientAnisotropicDiffusion |Gradient Anisotropic Diffusion]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | **[[Documentation/{{documentation/version}}/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | **[[Documentation/{{documentation/version}}/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] (Stephen Aylward) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | **[[Documentation/{{documentation/version}}/Modules/MedianImageFilter|Median Image Filter]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *Morphology | ||
+ | **[[Documentation/{{documentation/version}}/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] (Jim Miller) | ||
+ | **[[Documentation/{{documentation/version}}/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | |||
+ | ==Surface Models== | ||
+ | *[[Documentation/{{documentation/version}}/Modules/GrayscaleModelMaker| Grayscale Model Maker]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *[[Documentation/{{documentation/version}}/Modules/LabelMapSmoothing|Label Map Smoothing]] [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *[[Documentation/{{documentation/version}}/Modules/MergeModels| Merge Models]] (Nicole Aucoin) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/ModelMaker| Model Maker]] (Nicole Aucoin) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/ModelToLabelMap| Model To LabelMap]] (Nicole Aucoin) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/ProbeVolumeWithModel| Probe Volume With Model]] (Lauren O'Donnell) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | |||
+ | ==Converters== | ||
+ | *[[Documentation/{{documentation/version}}/Modules/CreateDICOMSeries|Create DICOM Series]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *[[Documentation/{{documentation/version}}/Modules/Crop Volume|Crop Volume]] (Andrey Fedorov) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/DicomToNrrdConverter|Dicom to Nrrd Converter]] (Jim Miller) | ||
+ | *[[Documentation/{{documentation/version}}/Modules/OrientScalarVolume| Orient Scalar Volume]] (Jim Miller) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | |||
+ | ==Endoscopy== | ||
+ | *[[Documentation/{{documentation/version}}/Modules/Endoscopy|Endoscopy]] (Steve Pieper) | ||
+ | |||
+ | ==[[image:UnderConstruction.png|tumb|10px]] Work in Progress [[image:UnderConstruction.png|tumb|10px]]== | ||
+ | * MultiVolume Support | ||
+ | **[[Documentation/{{documentation/version}}/Modules/MultiVolumeImporter|MultiVolume Importer]] (Andrey Fedorov) | ||
+ | **[[Documentation/{{documentation/version}}/Modules/MultiVolumeExplorer|MultiVolume Explorer]] (Andrey Fedorov) | ||
+ | |||
+ | ==Developer Tools== | ||
+ | *[[Documentation/{{documentation/version}}/Modules/Cameras|Cameras]] (Julien Finet) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *[[Documentation/{{documentation/version}}/Modules/EventBroker|Event Broker]] (Julien Finet) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *[[Documentation/{{documentation/version}}/Modules/ExecutionModelTour |Execution Model Tour]] (JC Fillion-Robin) [[image:UnderConstruction.png|tumb|10px]] | ||
+ | *[[Documentation/{{documentation/version}}/Modules/YOURMODULENAME|Module Template]] (JC Fillion-Robin) | ||
+ | *Performance Tests | ||
+ | *Tractography |
Revision as of 18:58, 17 May 2012
Home < Documentation < 4.1 < ModulesContents
Modules by Category
Core Modules
- Annotations (Nicole Aucoin)
- Colors (Nicole Aucoin)
- Data (Julien Finet)
- DICOM (Steve Pieper)
- Editor (Steve Pieper)
- Models (Nicole Aucoin)
- SceneViews (Nicole Aucoin)
- Transforms (Alex Yarmarkovich)
- View Controllers (Jim Miller)
- Volumes (Steve Pieper)
- Volume Rendering (Julien Finet)
- Welcome to Slicer (Wendy Plesniak)
Wizards
- ChangeTracker (Andrey Fedorov)
Informatics
- Sample Data (Steve Pieper)
Registration
- Introduction to Registration (Dominik Meier)
- General Brainsfit Registration (Hans Johnson)
- Resample Image (BRAINS) (Hans Johnson)
- Specialized
- ACPC Transform (Nicole Aucoin)
- Demon Registration (BRAINS) (Hans Johnson)
- Fiducial Registration (Stephen Aylward)
- Vector Demon Registration (Hans Johnson)
- Reformat (Michael Jeulin-Lagarrigue)
Segmentation
- EMSegment Easy (no atlas) (Kilian Pohl)
- EMSegment (with atlas) (Kilian Pohl)
- Simple Region Growing Segmentation (Jim Miller, Harini Veeraraghavan)
- Specialized
- EMSegment Command-line (Kilian Pohl)
- Foreground Masking (BRAINS) (Hans Johnson)
- Robust Statistics Segmenter (Yi Gao)
Quantification
- Data Probe (Steve Pieper)
- Label Statistics (Steve Pieper)
- PET Standard Uptake Value Computation (Nicole Aucoin)
- Change quantification
- Intensity Difference Metric (Andrey Fedorov)
Diffusion
- DWI to Full Brain Tractography (Demian Wasserman)
- Denoising
- DWI Joint Rician LMMSE Image Filter (Demian Wasserman)
- DWI Rician LMMSE Filter (Demian Wasserman)
- Tractography
- Tractography Display (Demian Wasserman)
- Tractography Fiducial Seeding (Demian Wasserman)
- Tractography Label Map Seeding (Demian Wasserman)
- Utilities
- DWI To DTI Estimation (Demian Wasserman)
- Diffusion Tensor Scalar Measurements (Demian Wasserman)
- Diffusion Weighted Volume Masking (Demian Wasserman)
- Resample DTI Volume (Demian Wasserman)
- Data Conversion
IGT
- OpenIGTLink IF (Junichi Tokuda)
Filtering
- N4ITK Bias Field Correction (Andrey Fedorov)
- CheckerBoard Filter (Jim Miller)
- Extract Skeleton (Jim Miller)
- Histogram Matching (Jim Miller)
- Image Label Combine (Alex Yarmarkovich)
- Resample Scalar/Vector/DWI Volume (Francois Budin)
- Threshold Scalar Volume (Nicole Aucoin)
- Voting Binary Hole Filling Image Filter (Jim Miller)
- Arithmetic
- Add Scalar Volumes (Jim Miller)
- Cast Scalar Volume (Nicole Aucoin)
- Mask Scalar Volume (Nicole Aucoin)
- Multiply Scalar Volumes (Jim Miller)
- Subtract Scalar Volumes (Jim Miller)
- Denoising
- Gradient Anisotropic Diffusion (Jim Miller)
- Curvature Anisotropic Diffusion (Jim Miller)
- Gaussian Blur Image Filter (Stephen Aylward)
- Median Image Filter (Jim Miller)
- Morphology
- Grayscale Fill Hole Image Filter (Jim Miller)
- Grayscale Grind Peak Image Filter (Jim Miller)
Surface Models
- Grayscale Model Maker (Jim Miller)
- Label Map Smoothing
- Merge Models (Nicole Aucoin)
- Model Maker (Nicole Aucoin)
- Model To LabelMap (Nicole Aucoin)
- Probe Volume With Model (Lauren O'Donnell)
Converters
- Create DICOM Series (Jim Miller)
- Crop Volume (Andrey Fedorov)
- Dicom to Nrrd Converter (Jim Miller)
- Orient Scalar Volume (Jim Miller)
Endoscopy
- Endoscopy (Steve Pieper)
Work in Progress
- MultiVolume Support
- MultiVolume Importer (Andrey Fedorov)
- MultiVolume Explorer (Andrey Fedorov)
Developer Tools
- Cameras (Julien Finet)
- Event Broker (Julien Finet)
- Execution Model Tour (JC Fillion-Robin)
- Module Template (JC Fillion-Robin)
- Performance Tests
- Tractography