Documentation/4.8/Registration/RegistrationLibrary

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Home < Documentation < 4.8 < Registration < RegistrationLibrary



  • UnderConstruction.pngPlease note this page is under construction and some cases/descriptions may be incomplete.
  • case description, step by step instructions, screencasts: click on the thumbnail image,
  • download image data: click on download link, which fetches .mrb file from MIDAS
  • main module documentation: click on the link in the toolbox column.
  • sort the table by a category: click on the sort icon in the column header



ID Description (click on image to access case page) Structure/Pathology Type of Registration Modality Download
1
RegLib C01: MR Meningioma Align baseline MR of meningioma with follow-up.
brain / tumor rigid+ affine MRI RegLib_C01.mrb
(input data only , Slicer mrb file. 13 MB)
2
RegLib C02: MR Meningioma Align MRI FLAIR with lesion segmentation to T1
multiple sclerosis affine MRI RegLib_C02.mrb
(input data only , Slicer mrb file. 19 MB)

RegLib_C02_full.mrb
(input data + results, Slicer mrb file. 19 MB).

3
RegLib C03: DTI alignment Align DTI volume with structural reference scan (T2)
brain / tumor affine + nonrigid DTI RegLib_C03.mrb
(input data only , Slicer mrb file. 50 MB)

RegLib_C03_full.mrb
(input data + results, Slicer mrb file. 108 MB).

4
RegLib C04: MS longitudinal+multispectral Align both intra- and inter-exam MRI of a single subject.
brain / multiple sclerosis affine MRI RegLib_C04.mrb
(input data only , Slicer mrb file. 19 MB)

RegLib_C04_full.mrb
(input data + results, Slicer mrb file. 19 MB).

6
RegLib C06: Breast MRI pre/post Align pre- and post-Rx breast MRI
breast cancer affine+nonrigid MRI RegLib_C06.mrb
(input data only , Slicer mrb file. 40 MB)

RegLib_C06_full.mrb
(input data + results, Slicer mrb file. 65 MB).

7
RegLib C07: Prostate MRI pre/post Align baseline and follow-up prostate MRI
prostate cancer affine+nonrigid MRI RegLib_C07.mrb
(input data only , Slicer mrb file. 8 MB)

RegLib_C07_full.mrb
(input data + results, Slicer mrb file. 27 MB).

8
RegLib C08: abdominal PET-CT pre/post Align baseline and follow-up PET/CT pairs
affine+nonrigid PET CT RegLib_C08.mrb
(input data only , Slicer mrb file. 8 MB)

RegLib_C08_full.mrb
(input data + results, Slicer mrb file. 27 MB).

9
RegLib C09: fMRI to T1 Align fMRI with structural MRI
brain rigid+nonrigid MRI RegLib_C09.mrb
(input data only , Slicer mrb file. 40 MB)

RegLib_C09_full.mrb
(input data + results, Slicer mrb file. 182 MB).

10
RegLib C10: Atlas to T1 Align probabilistic/group atlas with T1
brain rigid+nonrigid MRI RegLib_C10.mrb
(input data only , Slicer mrb file. 12 MB)

RegLib_C10_full.mrb
(input data + results, Slicer mrb file. 50 MB).

12
RegLib C12: Abdominal MR-CT Align abdominal MRI with CT
liver tumor affine + nonrigid CT RegLib_C12.mrb
(input data only , Slicer mrb file. 35 MB)

RegLib_C12_full.mrb
(input data + results, Slicer mrb file. 68 MB).

14
RegLib C14: MR-PET Align brain PET with low-res MRI
brain affine + nonrigid CT RegLib_C14.mrb
(input data only , Slicer mrb file. 9 MB)

RegLib_C14_full.mrb
(input data + results, Slicer mrb file. 22 MB).

15
RegLib C15: AC-PC AC-PC alignment of brain MRI
brain affine + nonrigid CT RegLib_C15.mrb
(input data only (incl. example fiducials) , Slicer mrb file. 22 MB)

RegLib_C15_full.mrb
(input data + results, Slicer mrb file. 22 MB).

17
RegLib C17: Abdominal MR-CT Preop MRI to intraop interventional CT
abdominal affine CT RegLib_C17.mrb
(input data only (incl. example fiducials) , Slicer mrb file. 10 MB)

RegLib_C17_full.mrb
(input data + results, Slicer mrb file. 12 MB).

20
RegLib C20 Thumb1.png
Alignment of PET/CT follow-up to baseline
full body rigid + affine + nonrigid PET/CT RegLib_C20.mrb
(input data only , Slicer mrb file. 76 MB)

RegLib_C20_full.mrb
(input data + results, Slicer mrb file. 171 MB).

21
RegLib C21 Thumb1.png
Alignment of knee MRI (2 different subjects)
knee rigid + affine + nonrigid MRI RegLib_C21.mrb (input data + results, Slicer mrb file. 12 MB).
27
RegLib C27 Thumb4.png
Alignment of DTI scan to structural reference T1-SPGR for surgical planning (tumor resection)
brain tumor affine + nonrigid DTI RegLib_C27.mrb
(input data, Slicer mrb file 50MB)

RegLib_C27_full.mrb
(input data + results, Slicer mrb file 114MB)

29
RegLib C29 Thumb.png
Alignment of DTI scan to structural reference T2/T1-SPGR for surgical planning (tumor resection)
brain tumor affine + nonrigid DTI RegLib_C29_raw.mrb
(input data, Slicer mrb file. 71 MB).

RegLib_C29_full.mrb
(input data+results, Slicer mrb file. 124 MB).

32
RegLib C32 Thumb4.png
Alignment of structural reference T1 to a DTI scan
brain affine + nonrigid DTI RegLib_C32.mrb (input data, Slicer mrb file. 31 MB).

RegLib_C32_full.mrb (input data+results, Slicer mrb file. 36 MB).

37 UnderConstruction.png
RegLib C37: tumor resection brain tumor resection
brain non-rigid MRI RegLib_C37.mrb
(input data only, Slicer mrb file. 12 MB)

RegLib_C7_full.mrb
(input data + results, Slicer mrb file. 36 MB).

38
RegLib C38 Thumb5.png
Alignment of multi-sequence MRI
traumatic brain injury (TBI) rigid MRI RegLib_C38.mrb (input data, Slicer mrb file. 42 MB).
39
RegLib C39: in vitro CT of human vertebra in vitro CT of human vertebra before and after structural damage
vertebra rigid CT RegLib_C39.mrb
(input data only, Slicer mrb file. 25 MB)

RegLib_C39_full.mrb
(input data + results, Slicer mrb file. 45 MB).

40
RegLib C40: micro CT of material sample register micro-CT of wood sample to quantify/model structural changes
wood sample non-rigid micro-CT RegLib_C40.mrb
(input data only, Slicer mrb file. 32 MB)

RegLib_C40_full.mrb
(input data + results, Slicer mrb file. 100 MB).

41
RegLib C41: mouse brain MRI Align two distinct mouse brain MRIs
mouse brain non-rigid MRI RegLib_C41.mrb
(input data only, Slicer mrb file. 32 MB)

RegLib_C41_full.mrb
(input data + results, Slicer mrb file. 100 MB).

42
RegLib C42: pediatric MRI autism
brain non-rigid MRI RegLib_C42.mrb
(input data only, Slicer mrb file. 12 MB)

RegLib_C42_full.mrb
(input data + results, Slicer mrb file. 36 MB).

44
RegLib C44: pelvic MRI pelvis
abdominal non-rigid MRI RegLib_C44.mrb
(input data only, Slicer mrb file. 74 MB)

RegLib_C44_full.mrb
(input data + results, Slicer mrb file. 82 MB).

46
RegLib C46: 2D cine MRI of breathing cycle 2D cine MRI of breathing cycle
abdominal non-rigid 2D , batch processing MRI RegLib_C46.mrb
(input data (ref + 1 slice only), Slicer mrb file. 0.6 MB)

RegLib_C46_Data.zip
(input data + results, zip file with original DICOM + registration script. 65 MB).

48
RegLib C48: Fiducial Registration of Abdominal MR-CT Preop MRI to intraop interventional CT
abdominal Fiducial-based rigid CT RegLib_C48.mrb
(input data only (incl. example fiducials) , Slicer mrb file. 10 MB)

RegLib_C48_full.mrb
(input data + results, Slicer mrb file. 12 MB).

49
RegLib C49: Pediatric Brain MR-DTI Pediatric Brain MR-DTI
brain affine + BSpline MRI RegLib_C49.mrb
(input data only (incl. example fiducials) , Slicer mrb file. 50 MB)

RegLib_C49_full.mrb
(input data + results, Slicer mrb file. 82 MB).

50
RegLib C50: Mouse CT mouse brain micro-CT
mouse brain affine + BSpline micro-CT RegLib_C50.mrb
(input data only (incl. example fiducials) , Slicer mrb file. 50 MB)

RegLib_C50_full.mrb
(input data + results, Slicer mrb file. 82 MB).