Difference between revisions of "User:UpdateBot/Issue-2843-Consolidated-Extension-List/4.4/ModuleExtensionListing"
From Slicer Wiki
(This page has been updated based on the list of extension description files available on the ExtensionsIndex) |
(This page has been updated based on the list of extension description files available on the ExtensionsIndex) |
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{{:User:UpdateBot/Issue-2843-Consolidated-Extension-List/4.4/ModuleExtensionListing/TOC}} | {{:User:UpdateBot/Issue-2843-Consolidated-Extension-List/4.4/ModuleExtensionListing/TOC}} | ||
= Modules by name = | = Modules by name = | ||
| − | + | 215 modules: | |
* [http://www.nitrc.org/projects/abc ABC] <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small> | * [http://www.nitrc.org/projects/abc ABC] <small>(cli, bundled in [http://www.nitrc.org/projects/abc ABC] extension)</small> | ||
* ACPCTransform <small>(cli, built-in)</small> | * ACPCTransform <small>(cli, built-in)</small> | ||
| Line 9: | Line 9: | ||
* Annotations <small>(loadable, built-in)</small> | * Annotations <small>(loadable, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| + | * [http://slicerrt.org Beams] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Bin Shrink] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Bin Shrink] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small> | ||
| Line 18: | Line 19: | ||
* BRAINSResize <small>(cli, built-in)</small> | * BRAINSResize <small>(cli, built-in)</small> | ||
* BRAINSROIAuto <small>(cli, built-in)</small> | * BRAINSROIAuto <small>(cli, built-in)</small> | ||
| + | * BRAINSStrip Rotation <small>(cli, built-in)</small> | ||
* BRAINSTransform Convert <small>(cli, built-in)</small> | * BRAINSTransform Convert <small>(cli, built-in)</small> | ||
| + | * [http://www.slicerigt.org Breach Warning] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
* Cast Scalar Volume <small>(cli, built-in)</small> | * Cast Scalar Volume <small>(cli, built-in)</small> | ||
| + | * [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small> | ||
* Checker Board Filter <small>(cli, built-in)</small> | * Checker Board Filter <small>(cli, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://www.slicerigt.org Collect Fiducials] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* Colors <small>(loadable, built-in)</small> | * Colors <small>(loadable, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| + | * [http://slicerrt.org Contour Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contour Morphology] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contours] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ Convert VTK] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small> | ||
* Create DICOMSeries <small>(cli, built-in)</small> | * Create DICOMSeries <small>(cli, built-in)</small> | ||
| + | * [http://www.slicerigt.org Create Models] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* Crop Volume <small>(loadable, built-in)</small> | * Crop Volume <small>(loadable, built-in)</small> | ||
* Curvature Anisotropic Diffusion <small>(cli, built-in)</small> | * Curvature Anisotropic Diffusion <small>(cli, built-in)</small> | ||
| Line 35: | Line 55: | ||
* Data Store <small>(loadable, built-in)</small> | * Data Store <small>(loadable, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small> | ||
| + | * DICOM <small>(scripted, built-in)</small> | ||
* DICOM2Full Brain Tractography <small>(scripted, built-in)</small> | * DICOM2Full Brain Tractography <small>(scripted, built-in)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Export] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Import] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Sro Export] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Sro Import] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* Diffusion Tensor Scalar Measurements <small>(cli, built-in)</small> | * Diffusion Tensor Scalar Measurements <small>(cli, built-in)</small> | ||
* Diffusion Weighted Volume Masking <small>(cli, built-in)</small> | * Diffusion Weighted Volume Masking <small>(cli, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small> | ||
| + | * [http://slicerrt.org Dose Accumulation] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Volume Histogram] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat dtitractstat] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
| + | * [http://slicerrt.org Dvh Comparison] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* DWIConvert <small>(cli, built-in)</small> | * DWIConvert <small>(cli, built-in)</small> | ||
* DWIJoint Rician LMMSEFilter <small>(cli, built-in)</small> | * DWIJoint Rician LMMSEFilter <small>(cli, built-in)</small> | ||
* DWIRician LMMSEFilter <small>(cli, built-in)</small> | * DWIRician LMMSEFilter <small>(cli, built-in)</small> | ||
* DWITo DTIEstimation <small>(cli, built-in)</small> | * DWITo DTIEstimation <small>(cli, built-in)</small> | ||
| − | |||
* EMSegment <small>(loadable, built-in)</small> | * EMSegment <small>(loadable, built-in)</small> | ||
* EMSegment Command Line <small>(cli, built-in)</small> | * EMSegment Command Line <small>(cli, built-in)</small> | ||
| Line 56: | Line 86: | ||
* Fiber Bundle Label Select <small>(cli, built-in)</small> | * Fiber Bundle Label Select <small>(cli, built-in)</small> | ||
* Fiber Bundle To Label Map <small>(scripted, built-in)</small> | * Fiber Bundle To Label Map <small>(scripted, built-in)</small> | ||
| − | * Fiber | + | * [http://www.nitrc.org/projects/dti_tract_stat Fiber Compare] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> |
* Fiducial Registration <small>(cli, built-in)</small> | * Fiducial Registration <small>(cli, built-in)</small> | ||
| + | * [http://www.slicerigt.org Fiducial Registration Wizard] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Fiducials To Model Registration] <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | * [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | * [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | ||
* Gaussian Blur Image Filter <small>(cli, built-in)</small> | * Gaussian Blur Image Filter <small>(cli, built-in)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
* Gradient Anisotropic Diffusion <small>(cli, built-in)</small> | * Gradient Anisotropic Diffusion <small>(cli, built-in)</small> | ||
| Line 68: | Line 101: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small> | ||
* Histogram Matching <small>(cli, built-in)</small> | * Histogram Matching <small>(cli, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | ||
| Line 77: | Line 111: | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Intensity Difference Metric] <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Intensity Difference Metric] <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small> | ||
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small> | * [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small> | ||
| + | * [http://slicerrt.org Isodose] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Label Addition] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| Line 82: | Line 117: | ||
* Label Map Smoothing <small>(cli, built-in)</small> | * Label Map Smoothing <small>(cli, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | ||
| − | * Label | + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small> |
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | ||
* Markups <small>(loadable, built-in)</small> | * Markups <small>(loadable, built-in)</small> | ||
| Line 91: | Line 128: | ||
* Median Image Filter <small>(cli, built-in)</small> | * Median Image Filter <small>(cli, built-in)</small> | ||
* Merge Models <small>(cli, built-in)</small> | * Merge Models <small>(cli, built-in)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat Merge Stat With Fiber] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | ||
* Model Maker <small>(cli, built-in)</small> | * Model Maker <small>(cli, built-in)</small> | ||
| Line 103: | Line 142: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
* Open IGTLink IF <small>(loadable, built-in)</small> | * Open IGTLink IF <small>(loadable, built-in)</small> | ||
| + | * [http://www.slicerigt.org Open IGTLink Remote] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* Orient Scalar Volume <small>(cli, built-in)</small> | * Orient Scalar Volume <small>(cli, built-in)</small> | ||
| + | * [http://www.slicerigt.org Path Explorer] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small> | ||
| Line 110: | Line 151: | ||
* PETStandard Uptake Value Computation <small>(cli, built-in)</small> | * PETStandard Uptake Value Computation <small>(cli, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | ||
| + | * [http://www.slicerigt.org Pivot Calibration] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small> | * [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small> | ||
| + | * [http://slicerrt.org Planar Image] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer bspline] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer dicomrt export] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer dicomrt import] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer landwarp] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer xformwarp] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Plastimatch Py] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Plm Register] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://www.slicerigt.org Plus Remote] <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small> | ||
* Probe Volume With Model <small>(cli, built-in)</small> | * Probe Volume With Model <small>(cli, built-in)</small> | ||
* [http://www.perktutor.org/ Python Metrics Calculator] <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | * [http://www.perktutor.org/ Python Metrics Calculator] <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | ||
* Reformat <small>(loadable, built-in)</small> | * Reformat <small>(loadable, built-in)</small> | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small> | ||
* Resample DTIVolume <small>(cli, built-in)</small> | * Resample DTIVolume <small>(cli, built-in)</small> | ||
* Resample Scalar Vector DWIVolume <small>(cli, built-in)</small> | * Resample Scalar Vector DWIVolume <small>(cli, built-in)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] extension)</small> | ||
* Robust Statistics Segmenter <small>(cli, built-in)</small> | * Robust Statistics Segmenter <small>(cli, built-in)</small> | ||
* Sample Data <small>(scripted, built-in)</small> | * Sample Data <small>(scripted, built-in)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* Scene Views <small>(loadable, built-in)</small> | * Scene Views <small>(loadable, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | ||
| Line 132: | Line 187: | ||
* Subtract Scalar Volumes <small>(cli, built-in)</small> | * Subtract Scalar Volumes <small>(cli, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| + | * Surface Toolbox <small>(scripted, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] extension)</small> | ||
| Line 141: | Line 197: | ||
* Tractography Interactive Seeding <small>(loadable, built-in)</small> | * Tractography Interactive Seeding <small>(loadable, built-in)</small> | ||
* Tractography Label Map Seeding <small>(cli, built-in)</small> | * Tractography Label Map Seeding <small>(cli, built-in)</small> | ||
| + | * [http://www.slicerigt.org Transform Fusion] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.perktutor.org/ Transform Recorder] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | * [http://www.perktutor.org/ Transform Recorder] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | ||
* Transforms <small>(loadable, built-in)</small> | * Transforms <small>(loadable, built-in)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
| + | * [http://www.slicerigt.org Ultrasound Snapshots] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* Units <small>(loadable, built-in)</small> | * Units <small>(loadable, built-in)</small> | ||
* VBRAINSDemon Warp <small>(cli, built-in)</small> | * VBRAINSDemon Warp <small>(cli, built-in)</small> | ||
| + | * Vector To Scalar Volume <small>(scripted, built-in)</small> | ||
| + | * [http://slicer.vmtk.org/ Vesselness Filtering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| + | * [http://slicerrt.org Vff File Reader] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* View Controllers <small>(loadable, built-in)</small> | * View Controllers <small>(loadable, built-in)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small> | ||
* Volume Rendering <small>(loadable, built-in)</small> | * Volume Rendering <small>(loadable, built-in)</small> | ||
| + | * [http://www.slicerigt.org Volume Reslice Driver] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* Volumes <small>(loadable, built-in)</small> | * Volumes <small>(loadable, built-in)</small> | ||
* Voting Binary Hole Filling Image Filter <small>(cli, built-in)</small> | * Voting Binary Hole Filling Image Filter <small>(cli, built-in)</small> | ||
| Line 154: | Line 219: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small> | ||
= Modules by category = | = Modules by category = | ||
| − | + | 36 categories: | |
* [[#BRAINS|BRAINS]] | * [[#BRAINS|BRAINS]] | ||
** [[#LabelStatistics|Label Statistics]] | ** [[#LabelStatistics|Label Statistics]] | ||
| + | * [[#Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]] | ||
* [[#CMF_Registration|CMF Registration]] | * [[#CMF_Registration|CMF Registration]] | ||
** [[#Voxelbase_Registration|Voxelbase Registration]] | ** [[#Voxelbase_Registration|Voxelbase Registration]] | ||
| Line 168: | Line 234: | ||
** [[#Diffusion_Tensor_Images|Diffusion Tensor Images]] | ** [[#Diffusion_Tensor_Images|Diffusion Tensor Images]] | ||
** [[#Diffusion_Weighted_Images|Diffusion Weighted Images]] | ** [[#Diffusion_Weighted_Images|Diffusion Weighted Images]] | ||
| + | ** [[#FiberAnalysis|Fiber Analysis]] | ||
** [[#Tractography|Tractography]] | ** [[#Tractography|Tractography]] | ||
* [[#Editor_Effects|Editor Effects]] | * [[#Editor_Effects|Editor Effects]] | ||
| Line 173: | Line 240: | ||
* [[#Examples|Examples]] | * [[#Examples|Examples]] | ||
* [[#Exporter|Exporter]] | * [[#Exporter|Exporter]] | ||
| + | * [[#File|File]] | ||
* [[#Filtering|Filtering]] | * [[#Filtering|Filtering]] | ||
** [[#Arithmetic|Arithmetic]] | ** [[#Arithmetic|Arithmetic]] | ||
| Line 195: | Line 263: | ||
* [[#MultiVolume_Support|Multi Volume Support]] | * [[#MultiVolume_Support|Multi Volume Support]] | ||
* [[#Perk_Tutor|Perk Tutor]] | * [[#Perk_Tutor|Perk Tutor]] | ||
| + | * [[#Plastimatch|Plastimatch]] | ||
| + | ** [[#Registration|Registration]] | ||
| + | ** [[#Utilities|Utilities]] | ||
* [[#Quantification|Quantification]] | * [[#Quantification|Quantification]] | ||
** [[#ChangeQuantification|Change Quantification]] | ** [[#ChangeQuantification|Change Quantification]] | ||
| + | * [[#Radiotherapy|Radiotherapy]] | ||
* [[#Registration|Registration]] | * [[#Registration|Registration]] | ||
** [[#Specialized|Specialized]] | ** [[#Specialized|Specialized]] | ||
* [[#Segmentation|Segmentation]] | * [[#Segmentation|Segmentation]] | ||
** [[#Specialized|Specialized]] | ** [[#Specialized|Specialized]] | ||
| + | * [[#Shape_Analysis|Shape Analysis]] | ||
* [[#Slicelets|Slicelets]] | * [[#Slicelets|Slicelets]] | ||
* [[#Surface_Models|Surface Models]] | * [[#Surface_Models|Surface Models]] | ||
* [[#Testing|Testing]] | * [[#Testing|Testing]] | ||
| + | ** [[#IGT_Tests|IGT Tests]] | ||
| + | ** [[#SlicerRT_Tests|Slicer RT Tests]] | ||
** [[#TestCases|Test Cases]] | ** [[#TestCases|Test Cases]] | ||
* [[#Unspecified|Unspecified]] | * [[#Unspecified|Unspecified]] | ||
* [[#Utilities|Utilities]] | * [[#Utilities|Utilities]] | ||
** [[#BRAINS|BRAINS]] | ** [[#BRAINS|BRAINS]] | ||
| + | * [[#Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]] | ||
* [[#Wizards|Wizards]] | * [[#Wizards|Wizards]] | ||
* [[#Work_in_Progress|Work in Progress]] | * [[#Work_in_Progress|Work in Progress]] | ||
| + | ** [[#Converters|Converters]] | ||
** [[#Informatics|Informatics]] | ** [[#Informatics|Informatics]] | ||
*** [[#TestCases|Test Cases]] | *** [[#TestCases|Test Cases]] | ||
| Line 216: | Line 293: | ||
=== LabelStatistics === | === LabelStatistics === | ||
* BRAINSLabel Stats | * BRAINSLabel Stats | ||
| + | == Cardiac MRI Toolkit == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter] | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter] | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard] | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction] | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut] | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate] | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization] | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter] | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow] | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar] | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit] | ||
== CMF Registration == | == CMF Registration == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix] | ||
| Line 228: | Line 318: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing] | ||
== Converters == | == Converters == | ||
| + | * Vector To Scalar Volume | ||
* Crop Volume | * Crop Volume | ||
| + | * Orient Scalar Volume | ||
* Create DICOMSeries | * Create DICOMSeries | ||
| − | |||
== Developer Tools == | == Developer Tools == | ||
* Event Broker | * Event Broker | ||
| + | * Execution Model Tour | ||
* Double Arrays | * Double Arrays | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] | ||
* Cameras | * Cameras | ||
* Extension Wizard | * Extension Wizard | ||
| − | |||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ImageMaker Image Maker] | ||
=== DICOM Plugins === | === DICOM Plugins === | ||
| + | * DICOMLongitudinal PETCTPlugin | ||
* DICOMRWVMPlugin | * DICOMRWVMPlugin | ||
| − | |||
* Multi Volume Importer Plugin | * Multi Volume Importer Plugin | ||
* DICOMPETSUVPlugin | * DICOMPETSUVPlugin | ||
| + | * Dicom Rt Import Plugin | ||
* DICOMDiffusion Volume Plugin | * DICOMDiffusion Volume Plugin | ||
| + | * DICOMSegmentation Plugin | ||
| + | * Dicom Sro Import Plugin | ||
* DICOMScalar Volume Plugin | * DICOMScalar Volume Plugin | ||
* DICOMSlicer Data Bundle Plugin | * DICOMSlicer Data Bundle Plugin | ||
=== Editor Extensions === | === Editor Extensions === | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect] | ||
| − | |||
| − | |||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Double Threshold Effect] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Double Threshold Effect] | ||
=== Matlab === | === Matlab === | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator] | ||
| − | |||
== Diffusion == | == Diffusion == | ||
* Tractography Display | * Tractography Display | ||
| Line 264: | Line 356: | ||
* Diffusion Tensor Scalar Measurements | * Diffusion Tensor Scalar Measurements | ||
* Tractography Label Map Seeding | * Tractography Label Map Seeding | ||
| − | |||
* Tractography Interactive Seeding | * Tractography Interactive Seeding | ||
=== Diffusion Weighted Images === | === Diffusion Weighted Images === | ||
* DWIRician LMMSEFilter | * DWIRician LMMSEFilter | ||
| + | * Resample Scalar Vector DWIVolume | ||
* DWIJoint Rician LMMSEFilter | * DWIJoint Rician LMMSEFilter | ||
* DWITo DTIEstimation | * DWITo DTIEstimation | ||
| + | * [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] | * [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] | ||
| − | |||
| − | |||
* Diffusion Weighted Volume Masking | * Diffusion Weighted Volume Masking | ||
| + | === FiberAnalysis === | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat Fiber Compare] | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat Merge Stat With Fiber] | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat dtitractstat] | ||
=== Tractography === | === Tractography === | ||
* Fiber Bundle To Label Map | * Fiber Bundle To Label Map | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
* Fiber Bundle Label Select | * Fiber Bundle Label Select | ||
== Editor Effects == | == Editor Effects == | ||
| Line 282: | Line 379: | ||
* Endoscopy | * Endoscopy | ||
== Examples == | == Examples == | ||
| − | |||
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut] | * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut] | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] | ||
== Exporter == | == Exporter == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] | ||
| + | == File == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ Convert VTK] | ||
== Filtering == | == Filtering == | ||
* Extract Skeleton | * Extract Skeleton | ||
| Line 314: | Line 413: | ||
* Grayscale Grind Peak Image Filter | * Grayscale Grind Peak Image Filter | ||
== IGT == | == IGT == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume] | ||
| + | * [http://www.slicerigt.org Volume Reslice Driver] | ||
| + | * [http://www.slicerigt.org Collect Fiducials] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] | ||
| + | * [http://www.slicerigt.org Create Models] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] | ||
* Open IGTLink IF | * Open IGTLink IF | ||
| − | |||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] | ||
| + | * [http://www.slicerigt.org Path Explorer] | ||
| + | * [http://www.slicerigt.org Ultrasound Snapshots] | ||
| + | * [http://www.slicerigt.org Transform Fusion] | ||
| + | * [http://www.slicerigt.org Breach Warning] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] | ||
| + | * [http://www.slicerigt.org Fiducial Registration Wizard] | ||
| + | * [http://www.slicerigt.org Open IGTLink Remote] | ||
| + | * [http://www.slicerigt.org Plus Remote] | ||
* [https://github.com/gpernelle/iGyne i Gyne] | * [https://github.com/gpernelle/iGyne i Gyne] | ||
| + | * [https://github.com/gpernelle/NeedleFinder Needle Finder] | ||
| + | * [http://www.slicerigt.org Fiducials To Model Registration] | ||
| + | * [http://www.slicerigt.org Pivot Calibration] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] | ||
== Informatics == | == Informatics == | ||
| Line 326: | Line 438: | ||
* Markups | * Markups | ||
* Units | * Units | ||
| + | * DICOM | ||
* Sample Data | * Sample Data | ||
* Subject Hierarchy | * Subject Hierarchy | ||
| Line 360: | Line 473: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion] | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport Series] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEMImport Series] | ||
| − | |||
== Multidimensional data == | == Multidimensional data == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer] | ||
| Line 374: | Line 487: | ||
* [http://www.perktutor.org/ Transform Recorder] | * [http://www.perktutor.org/ Transform Recorder] | ||
* [http://www.perktutor.org/ Perk Evaluator] | * [http://www.perktutor.org/ Perk Evaluator] | ||
| + | == Plastimatch == | ||
| + | * [http://slicerrt.org Dicom Sro Export] | ||
| + | * [http://slicerrt.org Plm Register] | ||
| + | === Registration === | ||
| + | * [http://slicerrt.org plastimatch slicer bspline] | ||
| + | * [http://slicerrt.org plastimatch slicer landwarp] | ||
| + | * [http://slicerrt.org plastimatch slicer xformwarp] | ||
| + | === Utilities === | ||
| + | * [http://slicerrt.org plastimatch slicer dicomrt export] | ||
| + | * [http://slicerrt.org plastimatch slicer dicomrt import] | ||
| + | * [http://slicerrt.org Plastimatch Py] | ||
== Quantification == | == Quantification == | ||
* PETStandard Uptake Value Computation | * PETStandard Uptake Value Computation | ||
| Line 379: | Line 503: | ||
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement] | * [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement] | ||
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] | * [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] | ||
| − | * | + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD] |
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] | ||
| Line 385: | Line 509: | ||
=== ChangeQuantification === | === ChangeQuantification === | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Intensity Difference Metric] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Intensity Difference Metric] | ||
| + | == Radiotherapy == | ||
| + | * [http://slicerrt.org Contour Comparison] | ||
| + | * [http://slicerrt.org Dicom Rt Import] | ||
| + | * [http://slicerrt.org Beams] | ||
| + | * [http://slicerrt.org Dvh Comparison] | ||
| + | * [http://slicerrt.org Isodose] | ||
| + | * [http://slicerrt.org Contours] | ||
| + | * [http://slicerrt.org Dose Accumulation] | ||
| + | * [http://slicerrt.org Dicom Rt Export] | ||
| + | * [http://slicerrt.org Dose Comparison] | ||
| + | * [http://slicerrt.org Contour Morphology] | ||
| + | * [http://slicerrt.org Planar Image] | ||
| + | * [http://slicerrt.org Dicom Sro Import] | ||
| + | * [http://slicerrt.org Dose Volume Histogram] | ||
== Registration == | == Registration == | ||
| + | * BRAINSResample | ||
* Transforms | * Transforms | ||
* BRAINSResize | * BRAINSResize | ||
| − | |||
* BRAINSFit | * BRAINSFit | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] | ||
| − | * | + | * Perform Metric Test |
=== Specialized === | === Specialized === | ||
* ACPCTransform | * ACPCTransform | ||
| Line 399: | Line 537: | ||
* Reformat | * Reformat | ||
== Segmentation == | == Segmentation == | ||
| − | * | + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Training] |
| + | * [http://www.nitrc.org/projects/abc ABC] | ||
* EMSegment Quick | * EMSegment Quick | ||
* Simple Region Growing Segmentation | * Simple Region Growing Segmentation | ||
| + | * [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] | ||
* EMSegment | * EMSegment | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi] | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD] | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model] | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Testing] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS IGR3D MABMIS Testing] | ||
| − | + | === Specialized === | |
| − | |||
| − | |||
| − | |||
| − | === Specialized === | ||
* EMSegment Command Line | * EMSegment Command Line | ||
* Robust Statistics Segmenter | * Robust Statistics Segmenter | ||
* BRAINSROIAuto | * BRAINSROIAuto | ||
| + | == Shape Analysis == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] | ||
== Slicelets == | == Slicelets == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] | ||
== Surface Models == | == Surface Models == | ||
| + | * Surface Toolbox | ||
* Model To Label Map | * Model To Label Map | ||
* Merge Models | * Merge Models | ||
| Line 432: | Line 576: | ||
* Performance Tests | * Performance Tests | ||
* Slicer MRBTest | * Slicer MRBTest | ||
| + | === IGT Tests === | ||
| + | * Breach Warning Self Test | ||
| + | === SlicerRT Tests === | ||
| + | * NAMIC Tutorial 2013June Self Test | ||
| + | * Dicom Rt Import Self Test | ||
=== TestCases === | === TestCases === | ||
* Slice Link Logic | * Slice Link Logic | ||
| Line 439: | Line 588: | ||
* test tractography display | * test tractography display | ||
* slicer Close Crash Bug2590 | * slicer Close Crash Bug2590 | ||
| + | * Subject Hierarchy Generic Self Test | ||
| + | * View Controllers Slice Interpolation Bug1926 | ||
* Charting | * Charting | ||
* Scene Performance | * Scene Performance | ||
* Markups In Compare Viewers Self Test | * Markups In Compare Viewers Self Test | ||
| + | * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures] | ||
* fiber visibility crash2438 | * fiber visibility crash2438 | ||
* scene Import2428 | * scene Import2428 | ||
| Line 449: | Line 601: | ||
* Add Many Markups Fiducial Test | * Add Many Markups Fiducial Test | ||
* Neurosurgical Planning Tutorial Markups Self Test | * Neurosurgical Planning Tutorial Markups Self Test | ||
| + | * Colors Scalar Bar Self Test | ||
* Markups In Views Self Test | * Markups In Views Self Test | ||
| + | * Subject Hierarchy Core Plugins Self Test | ||
* Change Tracker Self Test | * Change Tracker Self Test | ||
* Fiducial Layout Switch Bug1914 | * Fiducial Layout Switch Bug1914 | ||
| − | |||
* Slicer4Minute | * Slicer4Minute | ||
* label Toggle Bug2049 | * label Toggle Bug2049 | ||
| Line 459: | Line 612: | ||
== Utilities == | == Utilities == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] | ||
| + | * BRAINSStrip Rotation | ||
* EMSegment Transform To New Format | * EMSegment Transform To New Format | ||
* Data Store | * Data Store | ||
=== BRAINS === | === BRAINS === | ||
* BRAINSTransform Convert | * BRAINSTransform Convert | ||
| + | == Vascular Modeling Toolkit == | ||
| + | * [http://slicer.vmtk.org/ Vesselness Filtering] | ||
| + | * [http://slicer.vmtk.org/ Centerline Computation] | ||
| + | * [http://slicer.vmtk.org/ Level Set Segmentation] | ||
== Wizards == | == Wizards == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes] | ||
| Line 468: | Line 626: | ||
== Work in Progress == | == Work in Progress == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] | ||
| + | === Converters === | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter] | ||
=== Informatics === | === Informatics === | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] | ||
==== TestCases ==== | ==== TestCases ==== | ||
* Reporting Self Test | * Reporting Self Test | ||
| + | * Label To DICOMSEGConverter Self Test | ||
== XNATSlicer == | == XNATSlicer == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer] | ||
= Modules by contributing organization = | = Modules by contributing organization = | ||
| − | + | 71 contributing organizations: | |
* [[#Asclepios_INRIA|Asclepios INRIA]] | * [[#Asclepios_INRIA|Asclepios INRIA]] | ||
* [[#AZE_R_D|AZE R&D]] | * [[#AZE_R_D|AZE R&D]] | ||
| + | * [[#Boston_Children_s_Hospital|Boston Children's Hospital]] | ||
* [[#Brigham_and_Women_s_Hospital|Brigham and Women's Hospital]] | * [[#Brigham_and_Women_s_Hospital|Brigham and Women's Hospital]] | ||
* [[#BWH|BWH]] | * [[#BWH|BWH]] | ||
| Line 482: | Line 645: | ||
* [[#BWH.2C_SUMS|BWH, SUMS]] | * [[#BWH.2C_SUMS|BWH, SUMS]] | ||
* [[#BWH.2FUAB|BWH/UAB]] | * [[#BWH.2FUAB|BWH/UAB]] | ||
| + | * [[#CARMA|CARMA]] | ||
* [[#College_of_Information_Engineering.2C_Zhejiang_University_of_Technology.2C_Hangzhou.2C_China.29.3B_Xiaolei_Chen.2C_Jiashu_Zhang.28Department_of_Neurosurgery.2C_PLA_General_Hospital.2C_Beijing.2C_China|College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China]] | * [[#College_of_Information_Engineering.2C_Zhejiang_University_of_Technology.2C_Hangzhou.2C_China.29.3B_Xiaolei_Chen.2C_Jiashu_Zhang.28Department_of_Neurosurgery.2C_PLA_General_Hospital.2C_Beijing.2C_China|College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China]] | ||
* [[#CRTC|CRTC]] | * [[#CRTC|CRTC]] | ||
* [[#gatech|gatech]] | * [[#gatech|gatech]] | ||
* [[#GE|GE]] | * [[#GE|GE]] | ||
| − | |||
* [[#Georgia_Tech|Georgia Tech]] | * [[#Georgia_Tech|Georgia Tech]] | ||
* [[#IBM|IBM]] | * [[#IBM|IBM]] | ||
* [[#Isomics|Isomics]] | * [[#Isomics|Isomics]] | ||
* [[#Isomics_Inc.|Isomics Inc.]] | * [[#Isomics_Inc.|Isomics Inc.]] | ||
| − | |||
* [[#Isomics.2C_pieper.40isomics.com|Isomics, pieper@isomics.com]] | * [[#Isomics.2C_pieper.40isomics.com|Isomics, pieper@isomics.com]] | ||
| + | * [[#Kingston_General_Hospital|Kingston General Hospital]] | ||
* [[#Kitware|Kitware]] | * [[#Kitware|Kitware]] | ||
* [[#Kitware.29|Kitware)]] | * [[#Kitware.29|Kitware)]] | ||
* [[#MGH|MGH]] | * [[#MGH|MGH]] | ||
| + | * [[#MGH.2C_Boston|MGH, Boston]] | ||
* [[#Moka_Creative.2C_LLC.2C_kumar.sunil.p.40gmail.com|Moka Creative, LLC, kumar.sunil.p@gmail.com]] | * [[#Moka_Creative.2C_LLC.2C_kumar.sunil.p.40gmail.com|Moka Creative, LLC, kumar.sunil.p@gmail.com]] | ||
* [[#MSC.2FNLM|MSC/NLM]] | * [[#MSC.2FNLM|MSC/NLM]] | ||
* [[#Noware|Noware]] | * [[#Noware|Noware]] | ||
| + | * [[#Orobix|Orobix]] | ||
* [[#PerkLab_at_Queen_s_University|Perk Lab at Queen's University]] | * [[#PerkLab_at_Queen_s_University|Perk Lab at Queen's University]] | ||
* [[#PerkLab.2C_Queen_s|Perk Lab, Queen's]] | * [[#PerkLab.2C_Queen_s|Perk Lab, Queen's]] | ||
* [[#PerkLab.2C_Queen_s_University|Perk Lab, Queen's University]] | * [[#PerkLab.2C_Queen_s_University|Perk Lab, Queen's University]] | ||
* [[#PMH|PMH]] | * [[#PMH|PMH]] | ||
| + | * [[#PMH.2C_Toronto|PMH, Toronto]] | ||
| + | * [[#Princess_Margaret_Cancer_Centre|Princess Margaret Cancer Centre]] | ||
* [[#Queen_s|Queen's]] | * [[#Queen_s|Queen's]] | ||
| + | * [[#Queen_s_Universit|Queen's Universit]] | ||
* [[#Queen_s_University|Queen's University]] | * [[#Queen_s_University|Queen's University]] | ||
| + | * [[#Queen_s_University.29_Jaime_Garcia-Guevara_.28Queen_s_University|Queen's University) Jaime Garcia-Guevara (Queen's University]] | ||
* [[#Radiation_Medicine_Program.2C_Princess_Margaret_Hospital.2C_University_Health_Network_Toronto|Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto]] | * [[#Radiation_Medicine_Program.2C_Princess_Margaret_Hospital.2C_University_Health_Network_Toronto|Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto]] | ||
| + | * [[#RMP.2C_PMH|RMP, PMH]] | ||
* [[#SAIC-Frederick.2C_NCI-Frederick|SAIC-Frederick, NCI-Frederick]] | * [[#SAIC-Frederick.2C_NCI-Frederick|SAIC-Frederick, NCI-Frederick]] | ||
* [[#SBU|SBU]] | * [[#SBU|SBU]] | ||
* [[#SCI_Institute|SCI Institute]] | * [[#SCI_Institute|SCI Institute]] | ||
| + | * [[#Shiga_University_of_Medical_Science_in_Japan|Shiga University of Medical Science in Japan]] | ||
* [[#Shiga_University_of_Medical_Science.2C_Japan.2C_SPL|Shiga University of Medical Science, Japan, SPL]] | * [[#Shiga_University_of_Medical_Science.2C_Japan.2C_SPL|Shiga University of Medical Science, Japan, SPL]] | ||
| + | * [[#SINAPSE|SINAPSE]] | ||
* [[#SNR|SNR]] | * [[#SNR|SNR]] | ||
* [[#SPL|SPL]] | * [[#SPL|SPL]] | ||
| Line 515: | Line 687: | ||
* [[#SPL.2C_BWH|SPL, BWH]] | * [[#SPL.2C_BWH|SPL, BWH]] | ||
* [[#SPL.2C_BWH.2C_UPenn|SPL, BWH, UPenn]] | * [[#SPL.2C_BWH.2C_UPenn|SPL, BWH, UPenn]] | ||
| − | |||
* [[#SUMS|SUMS]] | * [[#SUMS|SUMS]] | ||
| + | * [[#Surgical_Planning_Lab|Surgical Planning Lab]] | ||
* [[#UAB|UAB]] | * [[#UAB|UAB]] | ||
| + | * [[#UHN.2C_Toronto|UHN, Toronto]] | ||
* [[#Uiowa|Uiowa]] | * [[#Uiowa|Uiowa]] | ||
* [[#UIowa|UIowa]] | * [[#UIowa|UIowa]] | ||
| Line 523: | Line 696: | ||
* [[#Univ_of_Michigan|Univ of Michigan]] | * [[#Univ_of_Michigan|Univ of Michigan]] | ||
* [[#Univ._of_Iowa|Univ. of Iowa]] | * [[#Univ._of_Iowa|Univ. of Iowa]] | ||
| + | * [[#University__Magna_Graecia__of_Catanzaro|University 'Magna Graecia' of Catanzaro]] | ||
* [[#University_College_Cork|University College Cork]] | * [[#University_College_Cork|University College Cork]] | ||
| − | |||
* [[#University_of_Heidelberg|University of Heidelberg]] | * [[#University_of_Heidelberg|University of Heidelberg]] | ||
* [[#University_of_Iowa|University of Iowa]] | * [[#University_of_Iowa|University of Iowa]] | ||
| Line 538: | Line 711: | ||
== AZE R&D == | == AZE R&D == | ||
* JRC2013Vis | * JRC2013Vis | ||
| + | == Boston Children's Hospital == | ||
| + | * [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| + | * [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| + | * [http://slicer.vmtk.org/ Vesselness Filtering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
== Brigham and Women's Hospital == | == Brigham and Women's Hospital == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small> | ||
| + | * Surface Toolbox <small>(scripted, built-in)</small> | ||
* test tractography display | * test tractography display | ||
| + | * [http://www.slicerigt.org Volume Reslice Driver] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
== BWH == | == BWH == | ||
* Add Many Markups Fiducial Test | * Add Many Markups Fiducial Test | ||
* Change Tracker Self Test | * Change Tracker Self Test | ||
| + | * Colors Scalar Bar Self Test | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small> | ||
* DICOMRWVMPlugin | * DICOMRWVMPlugin | ||
| − | |||
* Fiducial Layout Switch Bug1914 | * Fiducial Layout Switch Bug1914 | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small> | ||
* Markups <small>(loadable, built-in)</small> | * Markups <small>(loadable, built-in)</small> | ||
* Markups In Compare Viewers Self Test | * Markups In Compare Viewers Self Test | ||
| Line 554: | Line 734: | ||
* Neurosurgical Planning Tutorial Markups Self Test | * Neurosurgical Planning Tutorial Markups Self Test | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small> | ||
* Volume Rendering Scene Close <small>(scripted, built-in)</small> | * Volume Rendering Scene Close <small>(scripted, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] extension)</small> | ||
| Line 562: | Line 743: | ||
== BWH/UAB == | == BWH/UAB == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | ||
| + | == CARMA == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
== College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China == | == College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small> | ||
| Line 601: | Line 795: | ||
* View Controllers Slice Interpolation Bug1926 | * View Controllers Slice Interpolation Bug1926 | ||
* Voting Binary Hole Filling Image Filter <small>(cli, built-in)</small> | * Voting Binary Hole Filling Image Filter <small>(cli, built-in)</small> | ||
| − | |||
| − | |||
== Georgia Tech == | == Georgia Tech == | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
| Line 610: | Line 802: | ||
* Atlas Tests | * Atlas Tests | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | ||
| + | * [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
* Data <small>(loadable, built-in)</small> | * Data <small>(loadable, built-in)</small> | ||
* Data Probe <small>(scripted, built-in)</small> | * Data Probe <small>(scripted, built-in)</small> | ||
| − | * | + | * DICOM <small>(scripted, built-in)</small> |
* Endoscopy <small>(scripted, built-in)</small> | * Endoscopy <small>(scripted, built-in)</small> | ||
* fiber visibility crash2438 | * fiber visibility crash2438 | ||
* Fiber Bundle To Label Map <small>(scripted, built-in)</small> | * Fiber Bundle To Label Map <small>(scripted, built-in)</small> | ||
| − | |||
* label Toggle Bug2049 | * label Toggle Bug2049 | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| + | * [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
* Models <small>(loadable, built-in)</small> | * Models <small>(loadable, built-in)</small> | ||
* Performance Tests | * Performance Tests | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small> | ||
* RSNA2012Prostate Demo | * RSNA2012Prostate Demo | ||
* RSNAQuant Tutorial | * RSNAQuant Tutorial | ||
| Line 633: | Line 827: | ||
* Tractography Interactive Seeding <small>(loadable, built-in)</small> | * Tractography Interactive Seeding <small>(loadable, built-in)</small> | ||
* Transforms <small>(loadable, built-in)</small> | * Transforms <small>(loadable, built-in)</small> | ||
| + | * Vector To Scalar Volume <small>(scripted, built-in)</small> | ||
| + | * [http://slicer.vmtk.org/ Vesselness Filtering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
* View Controllers <small>(loadable, built-in)</small> | * View Controllers <small>(loadable, built-in)</small> | ||
* Volume Rendering <small>(loadable, built-in)</small> | * Volume Rendering <small>(loadable, built-in)</small> | ||
| Line 643: | Line 839: | ||
* Slicer MRBTest | * Slicer MRBTest | ||
* Threshold Threading Test | * Threshold Threading Test | ||
| − | |||
| − | |||
== Isomics, pieper@isomics.com == | == Isomics, pieper@isomics.com == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small> | ||
| + | == Kingston General Hospital == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
== Kitware == | == Kitware == | ||
* Cameras <small>(loadable, built-in)</small> | * Cameras <small>(loadable, built-in)</small> | ||
| Line 687: | Line 883: | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | * [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | ||
== MGH == | == MGH == | ||
| + | * [http://slicerrt.org Dicom Sro Export] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small> | * [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small> | ||
| + | * [http://slicerrt.org Plm Register] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | == MGH, Boston == | ||
| + | * [http://slicerrt.org Dicom Rt Export] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
== Moka Creative, LLC, kumar.sunil.p@gmail.com == | == Moka Creative, LLC, kumar.sunil.p@gmail.com == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small> | ||
| Line 695: | Line 895: | ||
== Noware == | == Noware == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] extension)</small> | ||
| + | == Orobix == | ||
| + | * [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| + | * [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| + | * Surface Toolbox <small>(scripted, built-in)</small> | ||
| + | * [http://slicer.vmtk.org/ Vesselness Filtering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
== PerkLab at Queen's University == | == PerkLab at Queen's University == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] extension)</small> | ||
| Line 705: | Line 910: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | ||
| + | * [http://www.slicerigt.org Plus Remote] <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small> | ||
== PMH == | == PMH == | ||
| + | * Colors Scalar Bar Self Test | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | ||
| + | == PMH, Toronto == | ||
| + | * [http://slicerrt.org Dicom Rt Export] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Isodose] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | == Princess Margaret Cancer Centre == | ||
| + | * [http://slicerrt.org Dicom Sro Export] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Sro Import] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
== Queen's == | == Queen's == | ||
| + | * [http://slicerrt.org Beams] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contour Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contour Morphology] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contours] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* Data <small>(loadable, built-in)</small> | * Data <small>(loadable, built-in)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Export] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Import] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * Dicom Rt Import Self Test | ||
| + | * [http://slicerrt.org Dose Accumulation] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Volume Histogram] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
| + | * [http://slicerrt.org Isodose] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * NAMIC Tutorial 2013June Self Test | ||
| + | * [http://slicerrt.org Planar Image] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* Subject Hierarchy <small>(loadable, built-in)</small> | * Subject Hierarchy <small>(loadable, built-in)</small> | ||
| + | * Subject Hierarchy Core Plugins Self Test | ||
| + | * Subject Hierarchy Generic Self Test | ||
| + | * [http://slicerrt.org Vff File Reader] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | == Queen's Universit == | ||
| + | * [http://www.slicerigt.org Fiducials To Model Registration] <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
== Queen's University == | == Queen's University == | ||
| + | * [http://www.slicerigt.org Breach Warning] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Collect Fiducials] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Create Models] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://slicerrt.org Dvh Comparison] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://www.slicerigt.org Fiducial Registration Wizard] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
| + | * [http://www.slicerigt.org Open IGTLink Remote] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.perktutor.org/ Perk Evaluator] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | * [http://www.perktutor.org/ Perk Evaluator] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | ||
| + | * [http://www.slicerigt.org Pivot Calibration] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.perktutor.org/ Python Metrics Calculator] <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | * [http://www.perktutor.org/ Python Metrics Calculator] <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] extension)</small> | ||
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | * [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | ||
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | * [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | ||
| + | * [http://www.slicerigt.org Transform Fusion] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.perktutor.org/ Transform Recorder] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | * [http://www.perktutor.org/ Transform Recorder] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | ||
| + | * [http://www.slicerigt.org Ultrasound Snapshots] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small> | ||
| + | * [http://www.slicerigt.org Volume Reslice Driver] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.perktutor.org/ Workflow Segmentation] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | * [http://www.perktutor.org/ Workflow Segmentation] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | ||
| + | == Queen's University) Jaime Garcia-Guevara (Queen's University == | ||
| + | * Breach Warning Self Test | ||
== Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto == | == Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | ||
| + | == RMP, PMH == | ||
| + | * Dicom Sro Import Plugin | ||
== SAIC-Frederick, NCI-Frederick == | == SAIC-Frederick, NCI-Frederick == | ||
* Volume Rendering <small>(loadable, built-in)</small> | * Volume Rendering <small>(loadable, built-in)</small> | ||
| Line 728: | Line 977: | ||
== SCI Institute == | == SCI Institute == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small> | ||
| + | == Shiga University of Medical Science in Japan == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small> | ||
== Shiga University of Medical Science, Japan, SPL == | == Shiga University of Medical Science, Japan, SPL == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small> | ||
| + | == SINAPSE == | ||
| + | * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures] <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small> | ||
== SNR == | == SNR == | ||
| + | * [http://www.slicerigt.org Path Explorer] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small> | ||
== SPL == | == SPL == | ||
* DICOM2Full Brain Tractography <small>(scripted, built-in)</small> | * DICOM2Full Brain Tractography <small>(scripted, built-in)</small> | ||
| + | * Label To DICOMSEGConverter Self Test | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small> | ||
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small> | * [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small> | ||
| Line 752: | Line 1,007: | ||
* DTIimport <small>(cli, built-in)</small> | * DTIimport <small>(cli, built-in)</small> | ||
* DWITo DTIEstimation <small>(cli, built-in)</small> | * DWITo DTIEstimation <small>(cli, built-in)</small> | ||
| − | |||
* Fiducial Registration <small>(cli, built-in)</small> | * Fiducial Registration <small>(cli, built-in)</small> | ||
* Grayscale Model Maker <small>(cli, built-in)</small> | * Grayscale Model Maker <small>(cli, built-in)</small> | ||
| Line 767: | Line 1,021: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | ||
* Probe Volume With Model <small>(cli, built-in)</small> | * Probe Volume With Model <small>(cli, built-in)</small> | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small> | ||
* Robust Statistics Segmenter <small>(cli, built-in)</small> | * Robust Statistics Segmenter <small>(cli, built-in)</small> | ||
* Scene Views <small>(loadable, built-in)</small> | * Scene Views <small>(loadable, built-in)</small> | ||
| Line 780: | Line 1,035: | ||
== SPL, BWH, UPenn == | == SPL, BWH, UPenn == | ||
* Merge Models <small>(cli, built-in)</small> | * Merge Models <small>(cli, built-in)</small> | ||
| − | |||
| − | |||
| − | |||
== SUMS == | == SUMS == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small> | ||
| + | == Surgical Planning Lab == | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small> | ||
== UAB == | == UAB == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small> | ||
| + | == UHN, Toronto == | ||
| + | * [http://slicerrt.org Contour Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contour Morphology] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contours] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Import] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Accumulation] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Volume Histogram] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
== Uiowa == | == Uiowa == | ||
* DWIConvert <small>(cli, built-in)</small> | * DWIConvert <small>(cli, built-in)</small> | ||
| Line 805: | Line 1,067: | ||
* DICOMPETSUVPlugin | * DICOMPETSUVPlugin | ||
* DICOMRWVMPlugin | * DICOMRWVMPlugin | ||
| + | == University 'Magna Graecia' of Catanzaro == | ||
| + | * [http://slicerrt.org Plastimatch Py] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
== University College Cork == | == University College Cork == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small> | ||
| − | |||
| − | |||
| − | |||
== University of Heidelberg == | == University of Heidelberg == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | ||
| Line 837: | Line 1,098: | ||
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small> | * [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small> | ||
= Modules by contributing individual = | = Modules by contributing individual = | ||
| − | + | 185 contributing individuals: | |
| + | * [[#.2F|/]] | ||
| + | * [[#a|a]] | ||
* [[#Akila_Viswanathan|Akila Viswanathan]] | * [[#Akila_Viswanathan|Akila Viswanathan]] | ||
* [[#Alan_Morris|Alan Morris]] <small>(Utah)</small> | * [[#Alan_Morris|Alan Morris]] <small>(Utah)</small> | ||
| Line 845: | Line 1,108: | ||
* [[#Alireza_Mehrtash|Alireza Mehrtash]] <small>(SPL and BWH)</small> | * [[#Alireza_Mehrtash|Alireza Mehrtash]] <small>(SPL and BWH)</small> | ||
* [[#Allen_Tannenbaum|Allen Tannenbaum]] <small>(Stony Brook University)</small> | * [[#Allen_Tannenbaum|Allen Tannenbaum]] <small>(Stony Brook University)</small> | ||
| + | * [[#Amelie_Meyer|Amelie Meyer]] <small>(PerkLab, Queen's University)</small> | ||
* [[#Analysis_Laboratory|Analysis Laboratory]] | * [[#Analysis_Laboratory|Analysis Laboratory]] | ||
* [[#Andinet_Enquobahrie|Andinet Enquobahrie]] <small>(Kitware)</small> | * [[#Andinet_Enquobahrie|Andinet Enquobahrie]] <small>(Kitware)</small> | ||
| Line 854: | Line 1,118: | ||
* [[#Antonio_Damato|Antonio Damato]] | * [[#Antonio_Damato|Antonio Damato]] | ||
* [[#Antonio_Tristan_Vega|Antonio Tristan Vega]] <small>(UVa)</small> | * [[#Antonio_Tristan_Vega|Antonio Tristan Vega]] <small>(UVa)</small> | ||
| + | * [[#Anuja_Sharma|Anuja Sharma]] | ||
* [[#Arie_Nakhmani|Arie Nakhmani]] <small>(UAB)</small> | * [[#Arie_Nakhmani|Arie Nakhmani]] <small>(UAB)</small> | ||
| − | * [[#Atsushi_Yamada|Atsushi Yamada]] <small>( | + | * [[#Atsushi_Yamada|Atsushi Yamada]] <small>(SNR)</small> |
* [[#Beatriz_Paniagua_from_Department_of_Orthodontics|Beatriz Paniagua from Department of Orthodontics]] <small>(UNC)</small> | * [[#Beatriz_Paniagua_from_Department_of_Orthodontics|Beatriz Paniagua from Department of Orthodontics]] <small>(UNC)</small> | ||
* [[#Benjamin_Long|Benjamin Long]] <small>(Kitware)</small> | * [[#Benjamin_Long|Benjamin Long]] <small>(Kitware)</small> | ||
| + | * [[#Benjamin_Yvernault|Benjamin Yvernault]] | ||
* [[#Bill_Lorensen|Bill Lorensen]] <small>(Noware)</small> | * [[#Bill_Lorensen|Bill Lorensen]] <small>(Noware)</small> | ||
* [[#Brad_Davis|Brad Davis]] | * [[#Brad_Davis|Brad Davis]] | ||
* [[#Bradley_Lowekamp|Bradley Lowekamp]] <small>(MSC/NLM)</small> | * [[#Bradley_Lowekamp|Bradley Lowekamp]] <small>(MSC/NLM)</small> | ||
| + | * [[#Brian_Zenger|Brian Zenger]] <small>(CARMA)</small> | ||
* [[#BWH|BWH]] | * [[#BWH|BWH]] | ||
| + | * [[#c|c]] | ||
| + | * [[#Carl-Fredrik_Westin|Carl-Fredrik Westin]] | ||
* [[#Carl-Fredrik_Westin._The_directional_iterators_were_contributed_by_Luis_Ibanez|Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez]] <small>(Kitware))</small> | * [[#Carl-Fredrik_Westin._The_directional_iterators_were_contributed_by_Luis_Ibanez|Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez]] <small>(Kitware))</small> | ||
* [[#Casey_B_Goodlett|Casey B Goodlett]] <small>(Kitware)</small> | * [[#Casey_B_Goodlett|Casey B Goodlett]] <small>(Kitware)</small> | ||
* [[#Charles_Marion|Charles Marion]] <small>(Kitware)</small> | * [[#Charles_Marion|Charles Marion]] <small>(Kitware)</small> | ||
| + | * [[#Christian_Baumgartner|Christian Baumgartner]] | ||
* [[#Csaba_Pinter|Csaba Pinter]] <small>(PerkLab, Queen's University)</small> | * [[#Csaba_Pinter|Csaba Pinter]] <small>(PerkLab, Queen's University)</small> | ||
* [[#Dan_Marcus|Dan Marcus]] <small>(Washington University in St. Louis)</small> | * [[#Dan_Marcus|Dan Marcus]] <small>(Washington University in St. Louis)</small> | ||
| Line 874: | Line 1,144: | ||
* [[#Dirk_Padfield|Dirk Padfield]] <small>(GE)</small> | * [[#Dirk_Padfield|Dirk Padfield]] <small>(GE)</small> | ||
* [[#Dominik_Meier|Dominik Meier]] <small>(SPL, BWH)</small> | * [[#Dominik_Meier|Dominik Meier]] <small>(SPL, BWH)</small> | ||
| + | * [[#e|e]] | ||
| + | * [[#er|er]] <small>(Kingston General Hospital)</small> | ||
* [[#Ethan_Ulrich|Ethan Ulrich]] <small>(Univ. of Iowa)</small> | * [[#Ethan_Ulrich|Ethan Ulrich]] <small>(Univ. of Iowa)</small> | ||
| + | * [[#Eugene_Kholmovski|Eugene Kholmovski]] <small>(CARMA)</small> | ||
* [[#ez|ez]] <small>(UVa)</small> | * [[#ez|ez]] <small>(UVa)</small> | ||
* [[#Fotis_Drakopoulos|Fotis Drakopoulos]] <small>(CRTC)</small> | * [[#Fotis_Drakopoulos|Fotis Drakopoulos]] <small>(CRTC)</small> | ||
| Line 881: | Line 1,154: | ||
* [[#Greg_Gardner|Greg Gardner]] <small>(Utah)</small> | * [[#Greg_Gardner|Greg Gardner]] <small>(Utah)</small> | ||
* [[#Greg_Harris|Greg Harris]] | * [[#Greg_Harris|Greg Harris]] | ||
| + | * [[#Greg_Sharp|Greg Sharp]] <small>(MGH, Boston)</small> | ||
| + | * [[#Gregory_Sharp|Gregory Sharp]] <small>(MGH)</small> | ||
* [[#Guido_Gerig|Guido Gerig]] <small>(UNC)</small> | * [[#Guido_Gerig|Guido Gerig]] <small>(UNC)</small> | ||
* [[#Guillaume_Pernelle|Guillaume Pernelle]] | * [[#Guillaume_Pernelle|Guillaume Pernelle]] | ||
* [[#Hans_J._Johnson|Hans J. Johnson]] | * [[#Hans_J._Johnson|Hans J. Johnson]] | ||
| − | * [[#Hans_Johnson|Hans Johnson]] <small>( | + | * [[#Hans_Johnson|Hans Johnson]] <small>(SINAPSE)</small> |
* [[#hans-johnson_-at-_uiowa.edu|hans-johnson -at- uiowa.edu]] | * [[#hans-johnson_-at-_uiowa.edu|hans-johnson -at- uiowa.edu]] | ||
* [[#http:.2F.2Fwww.psychiatry.uiowa.edu|http://www.psychiatry.uiowa.edu]] | * [[#http:.2F.2Fwww.psychiatry.uiowa.edu|http://www.psychiatry.uiowa.edu]] | ||
| + | * [[#i|i]] | ||
| + | * [[#Ipek_Oguz|Ipek Oguz]] | ||
* [[#Ivan_Kolesov|Ivan Kolesov]] <small>(Stony Brook University)</small> | * [[#Ivan_Kolesov|Ivan Kolesov]] <small>(Stony Brook University)</small> | ||
* [[#Jan_Egger|Jan Egger]] | * [[#Jan_Egger|Jan Egger]] | ||
| Line 892: | Line 1,169: | ||
* [[#Jean-Baptiste_Berger|Jean-Baptiste Berger]] <small>(Kitware)</small> | * [[#Jean-Baptiste_Berger|Jean-Baptiste Berger]] <small>(Kitware)</small> | ||
* [[#Jean-Christophe_Fillion-Robin|Jean-Christophe Fillion-Robin]] <small>(Kitware)</small> | * [[#Jean-Christophe_Fillion-Robin|Jean-Christophe Fillion-Robin]] <small>(Kitware)</small> | ||
| + | * [[#Jennifer_Andrea|Jennifer Andrea]] <small>(PerkLab, Queen's University)</small> | ||
| + | * [[#Jessica_Forbes|Jessica Forbes]] <small>(SINAPSE)</small> | ||
* [[#Jim_Miller|Jim Miller]] <small>(GE)</small> | * [[#Jim_Miller|Jim Miller]] <small>(GE)</small> | ||
* [[#Johan_Andruejol|Johan Andruejol]] <small>(Kitware)</small> | * [[#Johan_Andruejol|Johan Andruejol]] <small>(Kitware)</small> | ||
| Line 901: | Line 1,180: | ||
* [[#Julien_Jomier|Julien Jomier]] <small>(Kitware)</small> | * [[#Julien_Jomier|Julien Jomier]] <small>(Kitware)</small> | ||
* [[#Junichi_Tokuda|Junichi Tokuda]] <small>(BWH)</small> | * [[#Junichi_Tokuda|Junichi Tokuda]] <small>(BWH)</small> | ||
| + | * [[#K|K]] | ||
* [[#Kent_Williams|Kent Williams]] <small>(UIowa)</small> | * [[#Kent_Williams|Kent Williams]] <small>(UIowa)</small> | ||
| − | * [[#Kevin_Wang|Kevin Wang]] <small>( | + | * [[#Kent_WIlliams|Kent WIlliams]] |
| + | * [[#Kevin_Alex|Kevin Alex]] <small>(Kingston General Hospital)</small> | ||
| + | * [[#Kevin_Wang|Kevin Wang]] <small>(Princess Margaret Cancer Centre)</small> | ||
* [[#Kilian_Pohl|Kilian Pohl]] <small>(UPenn)</small> | * [[#Kilian_Pohl|Kilian Pohl]] <small>(UPenn)</small> | ||
| − | * [[#Koichiro_Murakami|Koichiro Murakami]] <small>( | + | * [[#Koichiro_Murakami|Koichiro Murakami]] <small>(SUMS)</small> |
| + | * [[#Kyle_Sunderl|Kyle Sunderl]] <small>(Queen's University)</small> | ||
| + | * [[#l|l]] | ||
* [[#Lauren_Barber|Lauren Barber]] | * [[#Lauren_Barber|Lauren Barber]] | ||
* [[#Lauren_O_Donnell|Lauren O'Donnell]] <small>(SPL, BWH)</small> | * [[#Lauren_O_Donnell|Lauren O'Donnell]] <small>(SPL, BWH)</small> | ||
| Line 910: | Line 1,194: | ||
* [[#Liang-Jia_Zhu|Liang-Jia Zhu]] <small>(UAB)</small> | * [[#Liang-Jia_Zhu|Liang-Jia Zhu]] <small>(UAB)</small> | ||
* [[#Liangjia_Zhu|Liangjia Zhu]] <small>(Stony Brook University)</small> | * [[#Liangjia_Zhu|Liangjia Zhu]] <small>(Stony Brook University)</small> | ||
| + | * [[#Luca_Antiga|Luca Antiga]] <small>(Orobix)</small> | ||
* [[#Luis_G._Torres|Luis G. Torres]] <small>(UNC)</small> | * [[#Luis_G._Torres|Luis G. Torres]] <small>(UNC)</small> | ||
* [[#Luping_Fang|Luping Fang]] <small>(College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)</small> | * [[#Luping_Fang|Luping Fang]] <small>(College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)</small> | ||
| + | * [[#m|m]] | ||
* [[#Marc_Niethammer|Marc Niethammer]] <small>(UNC)</small> | * [[#Marc_Niethammer|Marc Niethammer]] <small>(UNC)</small> | ||
* [[#Marcel_Prastawa_prastawa.40sci.utah.edu|Marcel Prastawa prastawa@sci.utah.edu]] | * [[#Marcel_Prastawa_prastawa.40sci.utah.edu|Marcel Prastawa prastawa@sci.utah.edu]] | ||
| Line 918: | Line 1,204: | ||
* [[#Martin_Styner|Martin Styner]] <small>(UNC)</small> | * [[#Martin_Styner|Martin Styner]] <small>(UNC)</small> | ||
* [[#Mason_Winsauer|Mason Winsauer]] | * [[#Mason_Winsauer|Mason Winsauer]] | ||
| + | * [[#Matt_Lougheed|Matt Lougheed]] <small>(PerkLab, Queen's University)</small> | ||
| + | * [[#Mattea_Welch|Mattea Welch]] <small>(PerkLab, Queen's University)</small> | ||
* [[#Matthew_Holden|Matthew Holden]] <small>(Queen's University)</small> | * [[#Matthew_Holden|Matthew Holden]] <small>(Queen's University)</small> | ||
* [[#Matthew_S._Holden|Matthew S. Holden]] <small>(Queen's University)</small> | * [[#Matthew_S._Holden|Matthew S. Holden]] <small>(Queen's University)</small> | ||
| Line 931: | Line 1,219: | ||
* [[#Nikos_Chrisochoides|Nikos Chrisochoides]] <small>(CRTC)</small> | * [[#Nikos_Chrisochoides|Nikos Chrisochoides]] <small>(CRTC)</small> | ||
* [[#Olivier_Clatz|Olivier Clatz]] <small>(Asclepios INRIA) and Nikos Chrisochoides (CRTC)</small> | * [[#Olivier_Clatz|Olivier Clatz]] <small>(Asclepios INRIA) and Nikos Chrisochoides (CRTC)</small> | ||
| + | * [[#p|p]] | ||
| + | * [[#Paolo_Zaffino|Paolo Zaffino]] <small>(University 'Magna Graecia' of Catanzaro)</small> | ||
* [[#Pat_Marion|Pat Marion]] <small>(Kitware)</small> | * [[#Pat_Marion|Pat Marion]] <small>(Kitware)</small> | ||
| − | |||
* [[#Paul_Mercea|Paul Mercea]] <small>(University of Heidelberg)</small> | * [[#Paul_Mercea|Paul Mercea]] <small>(University of Heidelberg)</small> | ||
* [[#Pengdong_Xiao|Pengdong Xiao]] <small>(Department of Orthodontics, UNC)</small> | * [[#Pengdong_Xiao|Pengdong Xiao]] <small>(Department of Orthodontics, UNC)</small> | ||
| Line 940: | Line 1,229: | ||
* [[#Pierre_Seroul|Pierre Seroul]] <small>(UNC)</small> | * [[#Pierre_Seroul|Pierre Seroul]] <small>(UNC)</small> | ||
* [[#Pietro_Nardelli|Pietro Nardelli]] <small>(University College Cork)</small> | * [[#Pietro_Nardelli|Pietro Nardelli]] <small>(University College Cork)</small> | ||
| + | * [[#Please_direct_questions_or_suggestions_to_http:.2F.2Fgroups.google.com.2Fgroup.2Fplastimatch|Please direct questions or suggestions to http://groups.google.com/group/plastimatch]] | ||
* [[#Polina_Goll|Polina Goll]] | * [[#Polina_Goll|Polina Goll]] | ||
* [[#Qing_Pan|Qing Pan]] <small>(College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)</small> | * [[#Qing_Pan|Qing Pan]] <small>(College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)</small> | ||
| + | * [[#R|R]] | ||
| + | * [[#r|r]] | ||
* [[#Raul_San_Jose|Raul San Jose]] <small>(SPL, BWH)</small> | * [[#Raul_San_Jose|Raul San Jose]] <small>(SPL, BWH)</small> | ||
* [[#Rob_MacLeod|Rob Mac Leod]] <small>(Utah)</small> | * [[#Rob_MacLeod|Rob Mac Leod]] <small>(Utah)</small> | ||
| Line 948: | Line 1,240: | ||
* [[#Ruifeng_Chen|Ruifeng Chen]] <small>(College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)</small> | * [[#Ruifeng_Chen|Ruifeng Chen]] <small>(College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)</small> | ||
* [[#S|S]] | * [[#S|S]] | ||
| + | * [[#Salma_Bengali|Salma Bengali]] <small>(CARMA)</small> | ||
* [[#Sam_Song|Sam Song]] | * [[#Sam_Song|Sam Song]] | ||
* [[#Santiago_Aja_Fern|Santiago Aja Fern]] <small>(UVa)</small> | * [[#Santiago_Aja_Fern|Santiago Aja Fern]] <small>(UVa)</small> | ||
| Line 953: | Line 1,246: | ||
* [[#Sebastien_Barre|Sebastien Barre]] | * [[#Sebastien_Barre|Sebastien Barre]] | ||
* [[#Shigeyuki_Naka|Shigeyuki Naka]] <small>(SUMS)</small> | * [[#Shigeyuki_Naka|Shigeyuki Naka]] <small>(SUMS)</small> | ||
| − | * [[#Soichiro_Tani|Soichiro Tani]] <small>(SUMS)</small> | + | * [[#Soichiro_Tani|Soichiro Tani]] <small>(BWH, SUMS)</small> |
* [[#Sonia_Pujol|Sonia Pujol]] <small>(SPL, BWH)</small> | * [[#Sonia_Pujol|Sonia Pujol]] <small>(SPL, BWH)</small> | ||
| + | * [[#Stefan_Lienhard|Stefan Lienhard]] | ||
* [[#Stephen_Aylward|Stephen Aylward]] <small>(Kitware)</small> | * [[#Stephen_Aylward|Stephen Aylward]] <small>(Kitware)</small> | ||
* [[#Stephen_R_Aylward|Stephen R Aylward]] <small>(Kitware)</small> | * [[#Stephen_R_Aylward|Stephen R Aylward]] <small>(Kitware)</small> | ||
| − | * [[#Steve_Pieper|Steve Pieper]] <small>( | + | * [[#Steve_Pieper|Steve Pieper]] <small>(SPL)</small> |
* [[#Sunil_Kumar|Sunil Kumar]] <small>(Moka Creative, LLC, kumar.sunil.p@gmail.com)</small> | * [[#Sunil_Kumar|Sunil Kumar]] <small>(Moka Creative, LLC, kumar.sunil.p@gmail.com)</small> | ||
* [[#Sylvain_Bouix|Sylvain Bouix]] <small>(BWH)</small> | * [[#Sylvain_Bouix|Sylvain Bouix]] <small>(BWH)</small> | ||
| + | * [[#Sylvain_Gouttard|Sylvain Gouttard]] | ||
| + | * [[#t|t]] | ||
* [[#Tamas_Ungi|Tamas Ungi]] <small>(PerkLab, Queen's University)</small> | * [[#Tamas_Ungi|Tamas Ungi]] <small>(PerkLab, Queen's University)</small> | ||
* [[#the_University_of_North_Carolina_at_Chapel_Hill|the University of North Carolina at Chapel Hill]] <small>(UNC)</small> | * [[#the_University_of_North_Carolina_at_Chapel_Hill|the University of North Carolina at Chapel Hill]] <small>(UNC)</small> | ||
| Line 966: | Line 1,262: | ||
* [[#Tohru_Tani|Tohru Tani]] <small>(SUMS)</small> | * [[#Tohru_Tani|Tohru Tani]] <small>(SUMS)</small> | ||
* [[#UNC_Medical_School|UNC Medical School]] | * [[#UNC_Medical_School|UNC Medical School]] | ||
| + | * [[#UofM_School_Of_Dentistry|Uof M School Of Dentistry]] | ||
* [[#UofM_School_of_Dentistry|Uof M School of Dentistry]] | * [[#UofM_School_of_Dentistry|Uof M School of Dentistry]] | ||
| − | |||
* [[#Vince_Magnotta|Vince Magnotta]] <small>(UIowa)</small> | * [[#Vince_Magnotta|Vince Magnotta]] <small>(UIowa)</small> | ||
* [[#Vincent_A._Magnotta|Vincent A. Magnotta]] | * [[#Vincent_A._Magnotta|Vincent A. Magnotta]] | ||
* [[#Vincent_Magnotta|Vincent Magnotta]] | * [[#Vincent_Magnotta|Vincent Magnotta]] | ||
* [[#Vinicius_Boen|Vinicius Boen]] <small>(Univ of Michigan)</small> | * [[#Vinicius_Boen|Vinicius Boen]] <small>(Univ of Michigan)</small> | ||
| + | * [[#Vivek_Narayan|Vivek Narayan]] <small>(BWH)</small> | ||
* [[#Wendy_Plesniak|Wendy Plesniak]] <small>(SPL, BWH)</small> | * [[#Wendy_Plesniak|Wendy Plesniak]] <small>(SPL, BWH)</small> | ||
* [[#Xiaodong_Tao|Xiaodong Tao]] <small>(GE)</small> | * [[#Xiaodong_Tao|Xiaodong Tao]] <small>(GE)</small> | ||
| Line 981: | Line 1,278: | ||
* [[#Yinglin_Lee|Yinglin Lee]] <small>(SPL, BWH)</small> | * [[#Yinglin_Lee|Yinglin Lee]] <small>(SPL, BWH)</small> | ||
* [[#Yingxuan_Zhu|Yingxuan Zhu]] <small>(GE)</small> | * [[#Yingxuan_Zhu|Yingxuan Zhu]] <small>(GE)</small> | ||
| + | * [[#Yinpeng_Li|Yinpeng Li]] | ||
* [[#Yixun_Liu|Yixun Liu]] <small>(CRTC)</small> | * [[#Yixun_Liu|Yixun Liu]] <small>(CRTC)</small> | ||
| + | * [[#Yogesh_Rathi|Yogesh Rathi]] <small>(yogesh@bwh.harvard.edu)</small> | ||
* [[#Yong_Zhang|Yong Zhang]] <small>(IBM)</small> | * [[#Yong_Zhang|Yong Zhang]] <small>(IBM)</small> | ||
* [[#Yumin_Yuan|Yumin Yuan]] | * [[#Yumin_Yuan|Yumin Yuan]] | ||
| + | * [[#Yundi_Shi|Yundi Shi]] | ||
| + | == / == | ||
| + | * Dicom Rt Import Plugin | ||
| + | == a == | ||
| + | * Dicom Rt Import Plugin | ||
== Akila Viswanathan == | == Akila Viswanathan == | ||
* [https://github.com/gpernelle/iGyne i Gyne] <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small> | * [https://github.com/gpernelle/iGyne i Gyne] <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small> | ||
* [https://github.com/gpernelle/NeedleFinder Needle Finder] <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small> | * [https://github.com/gpernelle/NeedleFinder Needle Finder] <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small> | ||
== Alan Morris == | == Alan Morris == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | ||
== Alex Yarmakovich == | == Alex Yarmakovich == | ||
| Line 995: | Line 1,311: | ||
== Alex Yarmarkovich == | == Alex Yarmarkovich == | ||
* Data <small>(loadable, built-in)</small> | * Data <small>(loadable, built-in)</small> | ||
| − | |||
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | * [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | * [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | ||
| Line 1,010: | Line 1,325: | ||
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] extension)</small> | ||
== Allen Tannenbaum == | == Allen Tannenbaum == | ||
| − | |||
| − | |||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | ||
* Robust Statistics Segmenter <small>(cli, built-in)</small> | * Robust Statistics Segmenter <small>(cli, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small> | ||
| + | == Amelie Meyer == | ||
| + | * [http://www.slicerigt.org Plus Remote] <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
== Analysis Laboratory == | == Analysis Laboratory == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| Line 1,027: | Line 1,342: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small> | ||
== Andras Lasso == | == Andras Lasso == | ||
| + | * [http://slicerrt.org Contour Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contour Morphology] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contours] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Export] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Import] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Accumulation] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Volume Histogram] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Isodose] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | ||
| + | * [http://www.slicerigt.org Plus Remote] <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequences] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | ||
* Transforms <small>(loadable, built-in)</small> | * Transforms <small>(loadable, built-in)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small> | ||
== Andreas Freudling == | == Andreas Freudling == | ||
* Volume Rendering <small>(loadable, built-in)</small> | * Volume Rendering <small>(loadable, built-in)</small> | ||
| Line 1,043: | Line 1,370: | ||
* Crop Volume <small>(loadable, built-in)</small> | * Crop Volume <small>(loadable, built-in)</small> | ||
* DICOMRWVMPlugin | * DICOMRWVMPlugin | ||
| + | * DICOMSegmentation Plugin | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Intensity Difference Metric] <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Intensity Difference Metric] <small>(cli, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small> | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small> | ||
| + | * Label To DICOMSEGConverter Self Test | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small> | ||
* Multi Volume Explorer <small>(loadable, built-in)</small> | * Multi Volume Explorer <small>(loadable, built-in)</small> | ||
| Line 1,051: | Line 1,381: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small> | ||
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small> | * [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small> | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small> | ||
* Reporting Self Test | * Reporting Self Test | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | ||
| Line 1,069: | Line 1,400: | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | * [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | * [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | ||
| + | == Anuja Sharma == | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat dtitractstat] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
== Arie Nakhmani == | == Arie Nakhmani == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] extension)</small> | ||
== Atsushi Yamada == | == Atsushi Yamada == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small> | ||
| + | * [http://www.slicerigt.org Path Explorer] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
== Beatriz Paniagua from Department of Orthodontics == | == Beatriz Paniagua from Department of Orthodontics == | ||
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small> | * [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small> | ||
== Benjamin Long == | == Benjamin Long == | ||
* Sample Data <small>(scripted, built-in)</small> | * Sample Data <small>(scripted, built-in)</small> | ||
| + | == Benjamin Yvernault == | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
== Bill Lorensen == | == Bill Lorensen == | ||
* Add Scalar Volumes <small>(cli, built-in)</small> | * Add Scalar Volumes <small>(cli, built-in)</small> | ||
| Line 1,109: | Line 1,445: | ||
* Simple Filters <small>(scripted, built-in)</small> | * Simple Filters <small>(scripted, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Spacing Aware Curvature Diffusion] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | ||
| + | == Brian Zenger == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
== BWH == | == BWH == | ||
| + | * DICOMSegmentation Plugin | ||
* Multi Volume Importer Plugin | * Multi Volume Importer Plugin | ||
| + | == c == | ||
| + | * Dicom Rt Import Plugin | ||
| + | == Carl-Fredrik Westin == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
== Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez == | == Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez == | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | * [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | ||
| Line 1,119: | Line 1,462: | ||
== Charles Marion == | == Charles Marion == | ||
* Data Store <small>(loadable, built-in)</small> | * Data Store <small>(loadable, built-in)</small> | ||
| + | == Christian Baumgartner == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ Convert VTK] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
== Csaba Pinter == | == Csaba Pinter == | ||
| + | * [http://slicerrt.org Beams] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contour Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contour Morphology] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contours] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* Data <small>(loadable, built-in)</small> | * Data <small>(loadable, built-in)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Export] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Import] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * Dicom Rt Import Self Test | ||
| + | * [http://slicerrt.org Dose Accumulation] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Volume Histogram] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dvh Comparison] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
| + | * [http://slicerrt.org Isodose] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * NAMIC Tutorial 2013June Self Test | ||
| + | * [http://slicerrt.org Planar Image] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* Subject Hierarchy <small>(loadable, built-in)</small> | * Subject Hierarchy <small>(loadable, built-in)</small> | ||
| + | * Subject Hierarchy Core Plugins Self Test | ||
| + | * Subject Hierarchy Generic Self Test | ||
| + | * [http://slicerrt.org Vff File Reader] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
== Dan Marcus == | == Dan Marcus == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small> | ||
| Line 1,129: | Line 1,493: | ||
== Daniel Haehn == | == Daniel Haehn == | ||
* Annotations <small>(loadable, built-in)</small> | * Annotations <small>(loadable, built-in)</small> | ||
| + | * [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
* EMSegment <small>(loadable, built-in)</small> | * EMSegment <small>(loadable, built-in)</small> | ||
* EMSegment Command Line <small>(cli, built-in)</small> | * EMSegment Command Line <small>(cli, built-in)</small> | ||
| + | * [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
* Merge Models <small>(cli, built-in)</small> | * Merge Models <small>(cli, built-in)</small> | ||
* Scene Views <small>(loadable, built-in)</small> | * Scene Views <small>(loadable, built-in)</small> | ||
| + | * [http://slicer.vmtk.org/ Vesselness Filtering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
== Danny Perry == | == Danny Perry == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | ||
| Line 1,151: | Line 1,519: | ||
== Dominik Meier == | == Dominik Meier == | ||
* Fiducial Registration <small>(cli, built-in)</small> | * Fiducial Registration <small>(cli, built-in)</small> | ||
| + | == e == | ||
| + | * Dicom Rt Import Plugin | ||
| + | == er == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
== Ethan Ulrich == | == Ethan Ulrich == | ||
* DICOMPETSUVPlugin | * DICOMPETSUVPlugin | ||
* DICOMRWVMPlugin | * DICOMRWVMPlugin | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | ||
| + | == Eugene Kholmovski == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
== ez == | == ez == | ||
* DWIJoint Rician LMMSEFilter <small>(cli, built-in)</small> | * DWIJoint Rician LMMSEFilter <small>(cli, built-in)</small> | ||
| Line 1,164: | Line 1,538: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small> | ||
== Francois Budin == | == Francois Budin == | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat dtitractstat] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small> | * [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] <small>(cli, bundled in [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] extension)</small> | ||
* Resample DTIVolume <small>(cli, built-in)</small> | * Resample DTIVolume <small>(cli, built-in)</small> | ||
* Resample Scalar Vector DWIVolume <small>(cli, built-in)</small> | * Resample Scalar Vector DWIVolume <small>(cli, built-in)</small> | ||
== Franklin King == | == Franklin King == | ||
| + | * [http://www.slicerigt.org Collect Fiducials] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Pivot Calibration] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Plus Remote] <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | * [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | ||
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | * [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | ||
| + | * [http://www.slicerigt.org Transform Fusion] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* Transforms <small>(loadable, built-in)</small> | * Transforms <small>(loadable, built-in)</small> | ||
== Greg Gardner == | == Greg Gardner == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | ||
| Line 1,178: | Line 1,562: | ||
* BRAINSResample <small>(cli, built-in)</small> | * BRAINSResample <small>(cli, built-in)</small> | ||
* VBRAINSDemon Warp <small>(cli, built-in)</small> | * VBRAINSDemon Warp <small>(cli, built-in)</small> | ||
| + | == Greg Sharp == | ||
| + | * [http://slicerrt.org Dicom Rt Export] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | == Gregory Sharp == | ||
| + | * [http://slicerrt.org Dicom Sro Export] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Plm Register] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
== Guido Gerig == | == Guido Gerig == | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat dtitractstat] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
* Extract Skeleton <small>(cli, built-in)</small> | * Extract Skeleton <small>(cli, built-in)</small> | ||
== Guillaume Pernelle == | == Guillaume Pernelle == | ||
| Line 1,192: | Line 1,582: | ||
* BRAINSResample <small>(cli, built-in)</small> | * BRAINSResample <small>(cli, built-in)</small> | ||
* BRAINSResize <small>(cli, built-in)</small> | * BRAINSResize <small>(cli, built-in)</small> | ||
| + | * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures] <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small> | ||
* DWIConvert <small>(cli, built-in)</small> | * DWIConvert <small>(cli, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
== hans-johnson -at- uiowa.edu == | == hans-johnson -at- uiowa.edu == | ||
* BRAINSFit <small>(cli, built-in)</small> | * BRAINSFit <small>(cli, built-in)</small> | ||
| Line 1,201: | Line 1,593: | ||
* BRAINSFit <small>(cli, built-in)</small> | * BRAINSFit <small>(cli, built-in)</small> | ||
* BRAINSROIAuto <small>(cli, built-in)</small> | * BRAINSROIAuto <small>(cli, built-in)</small> | ||
| + | == i == | ||
| + | * Dicom Rt Import Plugin | ||
| + | == Ipek Oguz == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ Convert VTK] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
== Ivan Kolesov == | == Ivan Kolesov == | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
| − | |||
| − | |||
== Jan Egger == | == Jan Egger == | ||
* [https://github.com/gpernelle/iGyne i Gyne] <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small> | * [https://github.com/gpernelle/iGyne i Gyne] <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small> | ||
== Jayender Jagadeesan == | == Jayender Jagadeesan == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small> | ||
== Jean-Baptiste Berger == | == Jean-Baptiste Berger == | ||
* Data Store <small>(loadable, built-in)</small> | * Data Store <small>(loadable, built-in)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat Fiber Compare] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat Merge Stat With Fiber] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
== Jean-Christophe Fillion-Robin == | == Jean-Christophe Fillion-Robin == | ||
* CLI4Test | * CLI4Test | ||
| Line 1,228: | Line 1,629: | ||
* View Controllers <small>(loadable, built-in)</small> | * View Controllers <small>(loadable, built-in)</small> | ||
* Welcome <small>(loadable, built-in)</small> | * Welcome <small>(loadable, built-in)</small> | ||
| + | == Jennifer Andrea == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
| + | * [http://slicerrt.org Vff File Reader] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | == Jessica Forbes == | ||
| + | * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures] <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small> | ||
== Jim Miller == | == Jim Miller == | ||
* Charting <small>(scripted, built-in)</small> | * Charting <small>(scripted, built-in)</small> | ||
| Line 1,243: | Line 1,649: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small> | ||
== Josh Cates == | == Josh Cates == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* Label Map Smoothing <small>(cli, built-in)</small> | * Label Map Smoothing <small>(cli, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | ||
== Joy Matsui == | == Joy Matsui == | ||
| Line 1,272: | Line 1,690: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Label] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Label] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small> | ||
| + | * [http://www.slicerigt.org Path Explorer] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small> | ||
| + | * [http://www.slicerigt.org Volume Reslice Driver] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | == K == | ||
| + | * Dicom Rt Import Plugin | ||
== Kent Williams == | == Kent Williams == | ||
* BRAINSDWICleanup <small>(cli, built-in)</small> | * BRAINSDWICleanup <small>(cli, built-in)</small> | ||
* BRAINSTransform Convert <small>(cli, built-in)</small> | * BRAINSTransform Convert <small>(cli, built-in)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ Convert VTK] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
* DWIConvert <small>(cli, built-in)</small> | * DWIConvert <small>(cli, built-in)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
| + | == Kent WIlliams == | ||
| + | * BRAINSStrip Rotation <small>(cli, built-in)</small> | ||
| + | == Kevin Alex == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
== Kevin Wang == | == Kevin Wang == | ||
| + | * Colors Scalar Bar Self Test | ||
| + | * [http://slicerrt.org Contour Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contour Morphology] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contours] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Export] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Import] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Sro Export] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Sro Import] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * Dicom Sro Import Plugin | ||
| + | * [http://slicerrt.org Dose Accumulation] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Volume Histogram] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Isodose] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | ||
| Line 1,291: | Line 1,732: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small> | ||
| + | == Kyle Sunderl == | ||
| + | * [http://slicerrt.org Dvh Comparison] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | == l == | ||
| + | * Dicom Rt Import Plugin | ||
== Lauren Barber == | == Lauren Barber == | ||
* [https://github.com/gpernelle/iGyne i Gyne] <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small> | * [https://github.com/gpernelle/iGyne i Gyne] <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small> | ||
| Line 1,300: | Line 1,745: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small> | ||
| + | * [http://www.slicerigt.org Path Explorer] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small> | ||
| Line 1,305: | Line 1,751: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | ||
== Liangjia Zhu == | == Liangjia Zhu == | ||
| − | |||
| − | |||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | ||
| + | == Luca Antiga == | ||
| + | * [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| + | * [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| + | * Surface Toolbox <small>(scripted, built-in)</small> | ||
| + | * [http://slicer.vmtk.org/ Vesselness Filtering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
== Luis G. Torres == | == Luis G. Torres == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small> | ||
== Luping Fang == | == Luping Fang == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small> | ||
| + | == m == | ||
| + | * Dicom Rt Import Plugin | ||
== Marc Niethammer == | == Marc Niethammer == | ||
* DWIRician LMMSEFilter <small>(cli, built-in)</small> | * DWIRician LMMSEFilter <small>(cli, built-in)</small> | ||
| Line 1,323: | Line 1,774: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | ||
== Martin Styner == | == Martin Styner == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ Convert VTK] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat dtitractstat] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
* Extract Skeleton <small>(cli, built-in)</small> | * Extract Skeleton <small>(cli, built-in)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
== Mason Winsauer == | == Mason Winsauer == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| Line 1,332: | Line 1,786: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| + | == Matt Lougheed == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small> | ||
| + | == Mattea Welch == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
== Matthew Holden == | == Matthew Holden == | ||
| + | * [http://www.slicerigt.org Breach Warning] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Fiducial Registration Wizard] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | ||
* [http://www.perktutor.org/ Python Metrics Calculator] <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | * [http://www.perktutor.org/ Python Metrics Calculator] <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | ||
| Line 1,369: | Line 1,830: | ||
* Cast Scalar Volume <small>(cli, built-in)</small> | * Cast Scalar Volume <small>(cli, built-in)</small> | ||
* Colors <small>(loadable, built-in)</small> | * Colors <small>(loadable, built-in)</small> | ||
| + | * Colors Scalar Bar Self Test | ||
* Data <small>(loadable, built-in)</small> | * Data <small>(loadable, built-in)</small> | ||
* Fiducial Layout Switch Bug1914 | * Fiducial Layout Switch Bug1914 | ||
| Line 1,383: | Line 1,845: | ||
* PETStandard Uptake Value Computation <small>(cli, built-in)</small> | * PETStandard Uptake Value Computation <small>(cli, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small> | ||
* Scene Views <small>(loadable, built-in)</small> | * Scene Views <small>(loadable, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | ||
| Line 1,396: | Line 1,859: | ||
== Olivier Clatz == | == Olivier Clatz == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small> | ||
| + | == p == | ||
| + | * Dicom Rt Import Plugin | ||
| + | == Paolo Zaffino == | ||
| + | * [http://slicerrt.org Plastimatch Py] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
== Pat Marion == | == Pat Marion == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small> | ||
| − | |||
| − | |||
== Paul Mercea == | == Paul Mercea == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | ||
| Line 1,408: | Line 1,873: | ||
== Peter Karasev == | == Peter Karasev == | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
| − | |||
== Peter Savadjiev == | == Peter Savadjiev == | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | * [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | * [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
== Pierre Seroul == | == Pierre Seroul == | ||
* Extract Skeleton <small>(cli, built-in)</small> | * Extract Skeleton <small>(cli, built-in)</small> | ||
== Pietro Nardelli == | == Pietro Nardelli == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small> | ||
| + | == Please direct questions or suggestions to http://groups.google.com/group/plastimatch == | ||
| + | * [http://slicerrt.org plastimatch slicer bspline] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer dicomrt export] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer dicomrt import] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer landwarp] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer xformwarp] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
== Polina Goll == | == Polina Goll == | ||
* EMSegment Command Line <small>(cli, built-in)</small> | * EMSegment Command Line <small>(cli, built-in)</small> | ||
== Qing Pan == | == Qing Pan == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small> | ||
| + | == R == | ||
| + | * Dicom Rt Import Plugin | ||
| + | == r == | ||
| + | * Dicom Rt Import Plugin | ||
== Raul San Jose == | == Raul San Jose == | ||
* Diffusion Tensor Scalar Measurements <small>(cli, built-in)</small> | * Diffusion Tensor Scalar Measurements <small>(cli, built-in)</small> | ||
| Line 1,425: | Line 1,900: | ||
* Tractography Label Map Seeding <small>(cli, built-in)</small> | * Tractography Label Map Seeding <small>(cli, built-in)</small> | ||
== Rob MacLeod == | == Rob MacLeod == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | ||
== Ron Kikinis == | == Ron Kikinis == | ||
| Line 1,432: | Line 1,919: | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small> | ||
* Crop Volume <small>(loadable, built-in)</small> | * Crop Volume <small>(loadable, built-in)</small> | ||
| − | |||
* Mask Scalar Volume <small>(cli, built-in)</small> | * Mask Scalar Volume <small>(cli, built-in)</small> | ||
* Merge Models <small>(cli, built-in)</small> | * Merge Models <small>(cli, built-in)</small> | ||
| Line 1,442: | Line 1,928: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | ||
* Robust Statistics Segmenter <small>(cli, built-in)</small> | * Robust Statistics Segmenter <small>(cli, built-in)</small> | ||
| + | * Surface Toolbox <small>(scripted, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM SUVFactor Calculator] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small> | ||
* Threshold Scalar Volume <small>(cli, built-in)</small> | * Threshold Scalar Volume <small>(cli, built-in)</small> | ||
| Line 1,451: | Line 1,938: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small> | ||
== S == | == S == | ||
| + | * Dicom Rt Import Plugin | ||
* [https://github.com/gpernelle/iGyne i Gyne] <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small> | * [https://github.com/gpernelle/iGyne i Gyne] <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small> | ||
* [https://github.com/gpernelle/NeedleFinder Needle Finder] <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small> | * [https://github.com/gpernelle/NeedleFinder Needle Finder] <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small> | ||
| + | == Salma Bengali == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
== Sam Song == | == Sam Song == | ||
* [https://github.com/gpernelle/iGyne i Gyne] <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small> | * [https://github.com/gpernelle/iGyne i Gyne] <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small> | ||
| Line 1,471: | Line 1,970: | ||
* DTIexport <small>(cli, built-in)</small> | * DTIexport <small>(cli, built-in)</small> | ||
* DTIimport <small>(cli, built-in)</small> | * DTIimport <small>(cli, built-in)</small> | ||
| + | == Stefan Lienhard == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ Convert VTK] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
== Stephen Aylward == | == Stephen Aylward == | ||
* Extract Skeleton <small>(cli, built-in)</small> | * Extract Skeleton <small>(cli, built-in)</small> | ||
| Line 1,479: | Line 1,981: | ||
* Atlas Tests | * Atlas Tests | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | ||
| − | * [http:// | + | * [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> |
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
* Data Probe <small>(scripted, built-in)</small> | * Data Probe <small>(scripted, built-in)</small> | ||
| + | * DICOM <small>(scripted, built-in)</small> | ||
* DICOMDiffusion Volume Plugin | * DICOMDiffusion Volume Plugin | ||
* DICOMLongitudinal PETCTPlugin | * DICOMLongitudinal PETCTPlugin | ||
* DICOMScalar Volume Plugin | * DICOMScalar Volume Plugin | ||
* DICOMSlicer Data Bundle Plugin | * DICOMSlicer Data Bundle Plugin | ||
| − | |||
* Endoscopy <small>(scripted, built-in)</small> | * Endoscopy <small>(scripted, built-in)</small> | ||
* fiber visibility crash2438 | * fiber visibility crash2438 | ||
* Fiber Bundle To Label Map <small>(scripted, built-in)</small> | * Fiber Bundle To Label Map <small>(scripted, built-in)</small> | ||
| − | |||
* label Toggle Bug2049 | * label Toggle Bug2049 | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| + | * [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
* Multi Volume Explorer <small>(loadable, built-in)</small> | * Multi Volume Explorer <small>(loadable, built-in)</small> | ||
* Multi Volume Importer <small>(scripted, built-in)</small> | * Multi Volume Importer <small>(scripted, built-in)</small> | ||
* Performance Tests | * Performance Tests | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small> | ||
* RSNA2012Prostate Demo | * RSNA2012Prostate Demo | ||
* RSNAQuant Tutorial | * RSNAQuant Tutorial | ||
| Line 1,507: | Line 2,010: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small> | ||
* Threshold Threading Test | * Threshold Threading Test | ||
| + | * Vector To Scalar Volume <small>(scripted, built-in)</small> | ||
| + | * [http://slicer.vmtk.org/ Vesselness Filtering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
* View Controllers <small>(loadable, built-in)</small> | * View Controllers <small>(loadable, built-in)</small> | ||
* Volumes <small>(loadable, built-in)</small> | * Volumes <small>(loadable, built-in)</small> | ||
| Line 1,514: | Line 2,019: | ||
== Sylvain Bouix == | == Sylvain Bouix == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | ||
| + | == Sylvain Gouttard == | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat dtitractstat] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
| + | == t == | ||
| + | * Dicom Rt Import Plugin | ||
== Tamas Ungi == | == Tamas Ungi == | ||
| + | * [http://www.slicerigt.org Breach Warning] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * Breach Warning Self Test | ||
| + | * [http://www.slicerigt.org Collect Fiducials] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Create Models] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Fiducial Registration Wizard] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Fiducials To Model Registration] <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Open IGTLink Remote] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.perktutor.org/ Perk Evaluator] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | * [http://www.perktutor.org/ Perk Evaluator] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | ||
| + | * [http://www.slicerigt.org Pivot Calibration] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Plus Remote] <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.perktutor.org/ Python Metrics Calculator] <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | * [http://www.perktutor.org/ Python Metrics Calculator] <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | ||
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | * [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | ||
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | * [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | ||
| + | * [http://www.slicerigt.org Transform Fusion] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.perktutor.org/ Transform Recorder] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | * [http://www.perktutor.org/ Transform Recorder] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | ||
| + | * [http://www.slicerigt.org Ultrasound Snapshots] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Volume Reslice Driver] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.perktutor.org/ Workflow Segmentation] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | * [http://www.perktutor.org/ Workflow Segmentation] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | ||
== the University of North Carolina at Chapel Hill == | == the University of North Carolina at Chapel Hill == | ||
| Line 1,538: | Line 2,059: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| + | == UofM School Of Dentistry == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Growing] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
== UofM School of Dentistry == | == UofM School of Dentistry == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Apply Matrix] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| Line 1,545: | Line 2,068: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Mask Creation] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| − | |||
| − | |||
== Vince Magnotta == | == Vince Magnotta == | ||
* DWIConvert <small>(cli, built-in)</small> | * DWIConvert <small>(cli, built-in)</small> | ||
| Line 1,562: | Line 2,083: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Non Growing] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| + | == Vivek Narayan == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small> | ||
== Wendy Plesniak == | == Wendy Plesniak == | ||
* Annotations <small>(loadable, built-in)</small> | * Annotations <small>(loadable, built-in)</small> | ||
| Line 1,584: | Line 2,108: | ||
* Volume Rendering <small>(loadable, built-in)</small> | * Volume Rendering <small>(loadable, built-in)</small> | ||
== Yi Gao == | == Yi Gao == | ||
| − | |||
| − | |||
* [https://github.com/gpernelle/iGyne i Gyne] <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small> | * [https://github.com/gpernelle/iGyne i Gyne] <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] extension)</small> | ||
| Line 1,595: | Line 2,117: | ||
== Yingxuan Zhu == | == Yingxuan Zhu == | ||
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small> | * [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small> | ||
| + | == Yinpeng Li == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ Convert VTK] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
== Yixun Liu == | == Yixun Liu == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Body Centric Cubic Mesh] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small> | ||
| + | == Yogesh Rathi == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ Convert VTK] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
== Yong Zhang == | == Yong Zhang == | ||
* Annotations <small>(loadable, built-in)</small> | * Annotations <small>(loadable, built-in)</small> | ||
== Yumin Yuan == | == Yumin Yuan == | ||
* EMSegment Command Line <small>(cli, built-in)</small> | * EMSegment Command Line <small>(cli, built-in)</small> | ||
| + | == Yundi Shi == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ Convert VTK] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat dtitractstat] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
= Modules by type = | = Modules by type = | ||
3 types: | 3 types: | ||
| Line 1,623: | Line 2,155: | ||
* BRAINSResize <small>(cli, built-in)</small> | * BRAINSResize <small>(cli, built-in)</small> | ||
* BRAINSROIAuto <small>(cli, built-in)</small> | * BRAINSROIAuto <small>(cli, built-in)</small> | ||
| + | * BRAINSStrip Rotation <small>(cli, built-in)</small> | ||
* BRAINSTransform Convert <small>(cli, built-in)</small> | * BRAINSTransform Convert <small>(cli, built-in)</small> | ||
* BSpline To Deformation Field <small>(cli, built-in)</small> | * BSpline To Deformation Field <small>(cli, built-in)</small> | ||
| Line 1,629: | Line 2,162: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver CLI] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] extension)</small> | ||
* CLIROITest <small>(cli, built-in)</small> | * CLIROITest <small>(cli, built-in)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ Convert VTK] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
* Create DICOMSeries <small>(cli, built-in)</small> | * Create DICOMSeries <small>(cli, built-in)</small> | ||
* Curvature Anisotropic Diffusion <small>(cli, built-in)</small> | * Curvature Anisotropic Diffusion <small>(cli, built-in)</small> | ||
| Line 1,636: | Line 2,177: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Downsize] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
* DTIexport <small>(cli, built-in)</small> | * DTIexport <small>(cli, built-in)</small> | ||
* DTIimport <small>(cli, built-in)</small> | * DTIimport <small>(cli, built-in)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat dtitractstat] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
* DWIConvert <small>(cli, built-in)</small> | * DWIConvert <small>(cli, built-in)</small> | ||
* DWIJoint Rician LMMSEFilter <small>(cli, built-in)</small> | * DWIJoint Rician LMMSEFilter <small>(cli, built-in)</small> | ||
| Line 1,650: | Line 2,193: | ||
* Extract Skeleton <small>(cli, built-in)</small> | * Extract Skeleton <small>(cli, built-in)</small> | ||
* Fiber Bundle Label Select <small>(cli, built-in)</small> | * Fiber Bundle Label Select <small>(cli, built-in)</small> | ||
| − | * Fiber | + | * [http://www.nitrc.org/projects/dti_tract_stat Fiber Compare] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> |
* Fiducial Registration <small>(cli, built-in)</small> | * Fiducial Registration <small>(cli, built-in)</small> | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | * [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | ||
| Line 1,678: | Line 2,221: | ||
* Median Image Filter <small>(cli, built-in)</small> | * Median Image Filter <small>(cli, built-in)</small> | ||
* Merge Models <small>(cli, built-in)</small> | * Merge Models <small>(cli, built-in)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat Merge Stat With Fiber] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion Mesh Compression] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] extension)</small> | ||
* Model Maker <small>(cli, built-in)</small> | * Model Maker <small>(cli, built-in)</small> | ||
* Model To Label Map <small>(cli, built-in)</small> | * Model To Label Map <small>(cli, built-in)</small> | ||
| Line 1,691: | Line 2,236: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT PETSUVImage Maker] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | ||
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small> | * [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] <small>(cli, bundled in [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer bspline] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer dicomrt export] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer dicomrt import] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer landwarp] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer xformwarp] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* Probe Volume With Model <small>(cli, built-in)</small> | * Probe Volume With Model <small>(cli, built-in)</small> | ||
* Resample DTIVolume <small>(cli, built-in)</small> | * Resample DTIVolume <small>(cli, built-in)</small> | ||
| Line 1,706: | Line 2,256: | ||
* Threshold Scalar Volume <small>(cli, built-in)</small> | * Threshold Scalar Volume <small>(cli, built-in)</small> | ||
* Tractography Label Map Seeding <small>(cli, built-in)</small> | * Tractography Label Map Seeding <small>(cli, built-in)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
* VBRAINSDemon Warp <small>(cli, built-in)</small> | * VBRAINSDemon Warp <small>(cli, built-in)</small> | ||
* Voting Binary Hole Filling Image Filter <small>(cli, built-in)</small> | * Voting Binary Hole Filling Image Filter <small>(cli, built-in)</small> | ||
== loadable == | == loadable == | ||
* Annotations <small>(loadable, built-in)</small> | * Annotations <small>(loadable, built-in)</small> | ||
| + | * [http://slicerrt.org Beams] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://www.slicerigt.org Breach Warning] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* Cameras <small>(loadable, built-in)</small> | * Cameras <small>(loadable, built-in)</small> | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
| + | * [http://www.slicerigt.org Collect Fiducials] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* Colors <small>(loadable, built-in)</small> | * Colors <small>(loadable, built-in)</small> | ||
| + | * [http://slicerrt.org Contour Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contour Morphology] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contours] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://www.slicerigt.org Create Models] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* Crop Volume <small>(loadable, built-in)</small> | * Crop Volume <small>(loadable, built-in)</small> | ||
* Data <small>(loadable, built-in)</small> | * Data <small>(loadable, built-in)</small> | ||
* Data Store <small>(loadable, built-in)</small> | * Data Store <small>(loadable, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Export] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Import] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Sro Import] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Accumulation] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Volume Histogram] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* Double Arrays <small>(loadable, built-in)</small> | * Double Arrays <small>(loadable, built-in)</small> | ||
* EMSegment <small>(loadable, built-in)</small> | * EMSegment <small>(loadable, built-in)</small> | ||
| Line 1,722: | Line 2,286: | ||
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut] <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small> | * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut] <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small> | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
| + | * [http://www.slicerigt.org Fiducial Registration Wizard] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
| + | * [http://slicerrt.org Isodose] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LongitudinalPETCT Longitudinal PETCT] extension)</small> | ||
* Markups <small>(loadable, built-in)</small> | * Markups <small>(loadable, built-in)</small> | ||
| Line 1,730: | Line 2,296: | ||
* Multi Volume Explorer <small>(loadable, built-in)</small> | * Multi Volume Explorer <small>(loadable, built-in)</small> | ||
* Open IGTLink IF <small>(loadable, built-in)</small> | * Open IGTLink IF <small>(loadable, built-in)</small> | ||
| + | * [http://www.slicerigt.org Open IGTLink Remote] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Path Explorer] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.perktutor.org/ Perk Evaluator] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | * [http://www.perktutor.org/ Perk Evaluator] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | ||
| + | * [http://www.slicerigt.org Pivot Calibration] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://slicerrt.org Planar Image] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Plastimatch Py] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* Reformat <small>(loadable, built-in)</small> | * Reformat <small>(loadable, built-in)</small> | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small> | ||
* Scene Views <small>(loadable, built-in)</small> | * Scene Views <small>(loadable, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Sequence Browser] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | ||
| Line 1,739: | Line 2,311: | ||
* Tractography Display <small>(loadable, built-in)</small> | * Tractography Display <small>(loadable, built-in)</small> | ||
* Tractography Interactive Seeding <small>(loadable, built-in)</small> | * Tractography Interactive Seeding <small>(loadable, built-in)</small> | ||
| + | * [http://www.slicerigt.org Transform Fusion] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.perktutor.org/ Transform Recorder] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | * [http://www.perktutor.org/ Transform Recorder] <small>(loadable, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | ||
* Transforms <small>(loadable, built-in)</small> | * Transforms <small>(loadable, built-in)</small> | ||
| + | * [http://www.slicerigt.org Ultrasound Snapshots] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* Units <small>(loadable, built-in)</small> | * Units <small>(loadable, built-in)</small> | ||
| + | * [http://slicerrt.org Vff File Reader] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* View Controllers <small>(loadable, built-in)</small> | * View Controllers <small>(loadable, built-in)</small> | ||
* Volume Rendering <small>(loadable, built-in)</small> | * Volume Rendering <small>(loadable, built-in)</small> | ||
| + | * [http://www.slicerigt.org Volume Reslice Driver] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* Volumes <small>(loadable, built-in)</small> | * Volumes <small>(loadable, built-in)</small> | ||
* Welcome <small>(loadable, built-in)</small> | * Welcome <small>(loadable, built-in)</small> | ||
| Line 1,749: | Line 2,325: | ||
== scripted == | == scripted == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Binary Watershed Effect] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | ||
| − | * [http:// | + | * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures] <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small> |
| + | * [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] extension)</small> | ||
* Charting <small>(scripted, built-in)</small> | * Charting <small>(scripted, built-in)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Compare Volumes] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CornerAnnotation Corner Annotation] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] extension)</small> | ||
* Data Probe <small>(scripted, built-in)</small> | * Data Probe <small>(scripted, built-in)</small> | ||
| + | * DICOM <small>(scripted, built-in)</small> | ||
* DICOM2Full Brain Tractography <small>(scripted, built-in)</small> | * DICOM2Full Brain Tractography <small>(scripted, built-in)</small> | ||
| + | * [http://slicerrt.org Dicom Sro Export] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Double Threshold Effect] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Double Threshold Effect] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | ||
| − | * | + | * [http://slicerrt.org Dvh Comparison] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> |
* Endoscopy <small>(scripted, built-in)</small> | * Endoscopy <small>(scripted, built-in)</small> | ||
* Extension Wizard <small>(scripted, built-in)</small> | * Extension Wizard <small>(scripted, built-in)</small> | ||
| − | |||
* Fiber Bundle To Label Map <small>(scripted, built-in)</small> | * Fiber Bundle To Label Map <small>(scripted, built-in)</small> | ||
| + | * [http://www.slicerigt.org Fiducials To Model Registration] <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small> | ||
* [https://github.com/gpernelle/iGyne i Gyne] <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small> | * [https://github.com/gpernelle/iGyne i Gyne] <small>(scripted, bundled in [https://github.com/gpernelle/iGyne i Gyne] extension)</small> | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM Label Object Statistics] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/IASEM IASEM] extension)</small> | ||
| − | * Label | + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small> |
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Landmark Registration] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
* Multi Volume Importer <small>(scripted, built-in)</small> | * Multi Volume Importer <small>(scripted, built-in)</small> | ||
* [https://github.com/gpernelle/NeedleFinder Needle Finder] <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small> | * [https://github.com/gpernelle/NeedleFinder Needle Finder] <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] extension)</small> | ||
| + | * [http://slicerrt.org Plm Register] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://www.slicerigt.org Plus Remote] <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] extension)</small> | ||
* [http://www.perktutor.org/ Python Metrics Calculator] <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | * [http://www.perktutor.org/ Python Metrics Calculator] <small>(scripted, bundled in [http://www.perktutor.org/ Perk Tutor] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] extension)</small> | ||
* Sample Data <small>(scripted, built-in)</small> | * Sample Data <small>(scripted, built-in)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
* Scene Performance <small>(scripted, built-in)</small> | * Scene Performance <small>(scripted, built-in)</small> | ||
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | * [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small> | ||
* Simple Filters <small>(scripted, built-in)</small> | * Simple Filters <small>(scripted, built-in)</small> | ||
* Slice Link Logic <small>(scripted, built-in)</small> | * Slice Link Logic <small>(scripted, built-in)</small> | ||
| Line 1,784: | Line 2,375: | ||
* [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | * [https://www.assembla.com/spaces/Scoliosis/wiki Spinal Curvature Measurement] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg Surface Registration] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] extension)</small> | ||
| + | * Surface Toolbox <small>(scripted, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/TCIABrowser TCIABrowser] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] extension)</small> | ||
| + | * Vector To Scalar Volume <small>(scripted, built-in)</small> | ||
| + | * [http://slicer.vmtk.org/ Vesselness Filtering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small> | ||
* Volume Rendering Scene Close <small>(scripted, built-in)</small> | * Volume Rendering Scene Close <small>(scripted, built-in)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small> | ||
= Modules by extension = | = Modules by extension = | ||
| − | + | 55 extensions: | |
* [[#ABC|ABC]] | * [[#ABC|ABC]] | ||
* [[#AirwaySegmentation|Airway Segmentation]] | * [[#AirwaySegmentation|Airway Segmentation]] | ||
* [[#builtin|builtin]] | * [[#builtin|builtin]] | ||
| + | * [[#Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]] | ||
| + | * [[#CardiacAgastonMeasures|Cardiac Agaston Measures]] | ||
* [[#CarreraSlice|Carrera Slice]] | * [[#CarreraSlice|Carrera Slice]] | ||
* [[#CBC_3D_I2MConversion|CBC 3D I2MConversion]] | * [[#CBC_3D_I2MConversion|CBC 3D I2MConversion]] | ||
| Line 1,802: | Line 2,400: | ||
* [[#CurveMaker|Curve Maker]] | * [[#CurveMaker|Curve Maker]] | ||
* [[#DiceComputation|Dice Computation]] | * [[#DiceComputation|Dice Computation]] | ||
| + | * [[#DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] | ||
* [[#ErodeDilateLabel|Erode Dilate Label]] | * [[#ErodeDilateLabel|Erode Dilate Label]] | ||
* [[#FastGrowCutEffect|Fast Grow Cut Effect]] | * [[#FastGrowCutEffect|Fast Grow Cut Effect]] | ||
| Line 1,815: | Line 2,414: | ||
* [[#MABMIS|MABMIS]] | * [[#MABMIS|MABMIS]] | ||
* [[#MatlabBridge|Matlab Bridge]] | * [[#MatlabBridge|Matlab Bridge]] | ||
| + | * [[#MeshToLabelMap|Mesh To Label Map]] | ||
* [[#MultidimData|Multidim Data]] | * [[#MultidimData|Multidim Data]] | ||
* [[#NeedleFinder|Needle Finder]] | * [[#NeedleFinder|Needle Finder]] | ||
| + | * [[#OpenCAD|Open CAD]] | ||
* [[#PBNRR|PBNRR]] | * [[#PBNRR|PBNRR]] | ||
* [[#PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] | * [[#PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] | ||
| Line 1,824: | Line 2,425: | ||
* [[#PortPlacement|Port Placement]] | * [[#PortPlacement|Port Placement]] | ||
* [[#PyDevRemoteDebug|Py Dev Remote Debug]] | * [[#PyDevRemoteDebug|Py Dev Remote Debug]] | ||
| + | * [[#Reporting|Reporting]] | ||
| + | * [[#ResectionPlanner|Resection Planner]] | ||
* [[#Scoliosis|Scoliosis]] | * [[#Scoliosis|Scoliosis]] | ||
* [[#SegmentationAidedRegistration|Segmentation Aided Registration]] | * [[#SegmentationAidedRegistration|Segmentation Aided Registration]] | ||
| + | * [[#SlicerExtension-VMTK|VMTK]] | ||
| + | * [[#SlicerIGT|Slicer IGT]] | ||
| + | * [[#SlicerRT|Slicer RT]] | ||
* [[#SlicerToKiwiExporter|Slicer To Kiwi Exporter]] | * [[#SlicerToKiwiExporter|Slicer To Kiwi Exporter]] | ||
* [[#SobolevSegmenter|Sobolev Segmenter]] | * [[#SobolevSegmenter|Sobolev Segmenter]] | ||
| Line 1,832: | Line 2,438: | ||
* [[#ThingiverseBrowser|Thingiverse Browser]] | * [[#ThingiverseBrowser|Thingiverse Browser]] | ||
* [[#TrackerStabilizer|Tracker Stabilizer]] | * [[#TrackerStabilizer|Tracker Stabilizer]] | ||
| + | * [[#UKFTractography|UKFTractography]] | ||
| + | * [[#VolumeClip|Volume Clip]] | ||
* [[#WindowLevelEffect|Window Level Effect]] | * [[#WindowLevelEffect|Window Level Effect]] | ||
* [[#XNATSlicer|XNATSlicer]] | * [[#XNATSlicer|XNATSlicer]] | ||
| Line 1,849: | Line 2,457: | ||
* BRAINSResize <small>(cli, built-in)</small> | * BRAINSResize <small>(cli, built-in)</small> | ||
* BRAINSROIAuto <small>(cli, built-in)</small> | * BRAINSROIAuto <small>(cli, built-in)</small> | ||
| + | * BRAINSStrip Rotation <small>(cli, built-in)</small> | ||
* BRAINSTransform Convert <small>(cli, built-in)</small> | * BRAINSTransform Convert <small>(cli, built-in)</small> | ||
* BSpline To Deformation Field <small>(cli, built-in)</small> | * BSpline To Deformation Field <small>(cli, built-in)</small> | ||
| Line 1,863: | Line 2,472: | ||
* Data Probe <small>(scripted, built-in)</small> | * Data Probe <small>(scripted, built-in)</small> | ||
* Data Store <small>(loadable, built-in)</small> | * Data Store <small>(loadable, built-in)</small> | ||
| + | * DICOM <small>(scripted, built-in)</small> | ||
* DICOM2Full Brain Tractography <small>(scripted, built-in)</small> | * DICOM2Full Brain Tractography <small>(scripted, built-in)</small> | ||
* Diffusion Tensor Scalar Measurements <small>(cli, built-in)</small> | * Diffusion Tensor Scalar Measurements <small>(cli, built-in)</small> | ||
| Line 1,875: | Line 2,485: | ||
* DWITo DTIEstimation <small>(cli, built-in)</small> | * DWITo DTIEstimation <small>(cli, built-in)</small> | ||
* DWIUnbiased Non Local Means Filter <small>(cli, built-in)</small> | * DWIUnbiased Non Local Means Filter <small>(cli, built-in)</small> | ||
| − | |||
* EMSegment <small>(loadable, built-in)</small> | * EMSegment <small>(loadable, built-in)</small> | ||
* EMSegment Command Line <small>(cli, built-in)</small> | * EMSegment Command Line <small>(cli, built-in)</small> | ||
| Line 1,887: | Line 2,496: | ||
* Fiber Bundle Label Select <small>(cli, built-in)</small> | * Fiber Bundle Label Select <small>(cli, built-in)</small> | ||
* Fiber Bundle To Label Map <small>(scripted, built-in)</small> | * Fiber Bundle To Label Map <small>(scripted, built-in)</small> | ||
| − | |||
* Fiducial Registration <small>(cli, built-in)</small> | * Fiducial Registration <small>(cli, built-in)</small> | ||
* Gaussian Blur Image Filter <small>(cli, built-in)</small> | * Gaussian Blur Image Filter <small>(cli, built-in)</small> | ||
| Line 1,897: | Line 2,505: | ||
* Image Label Combine <small>(cli, built-in)</small> | * Image Label Combine <small>(cli, built-in)</small> | ||
* Label Map Smoothing <small>(cli, built-in)</small> | * Label Map Smoothing <small>(cli, built-in)</small> | ||
| − | |||
* Markups <small>(loadable, built-in)</small> | * Markups <small>(loadable, built-in)</small> | ||
* Mask Scalar Volume <small>(cli, built-in)</small> | * Mask Scalar Volume <small>(cli, built-in)</small> | ||
| Line 1,929: | Line 2,536: | ||
* Subject Hierarchy <small>(loadable, built-in)</small> | * Subject Hierarchy <small>(loadable, built-in)</small> | ||
* Subtract Scalar Volumes <small>(cli, built-in)</small> | * Subtract Scalar Volumes <small>(cli, built-in)</small> | ||
| + | * Surface Toolbox <small>(scripted, built-in)</small> | ||
* Test Grid Transform Registration <small>(cli, built-in)</small> | * Test Grid Transform Registration <small>(cli, built-in)</small> | ||
* Threshold Scalar Volume <small>(cli, built-in)</small> | * Threshold Scalar Volume <small>(cli, built-in)</small> | ||
| Line 1,937: | Line 2,545: | ||
* Units <small>(loadable, built-in)</small> | * Units <small>(loadable, built-in)</small> | ||
* VBRAINSDemon Warp <small>(cli, built-in)</small> | * VBRAINSDemon Warp <small>(cli, built-in)</small> | ||
| + | * Vector To Scalar Volume <small>(scripted, built-in)</small> | ||
* View Controllers <small>(loadable, built-in)</small> | * View Controllers <small>(loadable, built-in)</small> | ||
* Volume Rendering <small>(loadable, built-in)</small> | * Volume Rendering <small>(loadable, built-in)</small> | ||
| Line 1,943: | Line 2,552: | ||
* Voting Binary Hole Filling Image Filter <small>(cli, built-in)</small> | * Voting Binary Hole Filling Image Filter <small>(cli, built-in)</small> | ||
* Welcome <small>(loadable, built-in)</small> | * Welcome <small>(loadable, built-in)</small> | ||
| + | == Cardiac_MRI_Toolkit == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut] <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ LASegmentation Workflow] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Scar Visualization] <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small> | ||
| + | == CardiacAgastonMeasures == | ||
| + | * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agatston Measures] <small>(scripted, bundled in [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] extension)</small> | ||
== CarreraSlice == | == CarreraSlice == | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
| − | |||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter KUtil] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small> | ||
| Line 1,973: | Line 2,596: | ||
== DiceComputation == | == DiceComputation == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] extension)</small> | ||
| + | == DTIAtlasFiberAnalyzer == | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat dtitractstat] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat Fiber Compare] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat Merge Stat With Fiber] <small>(cli, bundled in [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] extension)</small> | ||
== ErodeDilateLabel == | == ErodeDilateLabel == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Dilate Label] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] extension)</small> | ||
| Line 1,978: | Line 2,606: | ||
== FastGrowCutEffect == | == FastGrowCutEffect == | ||
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut] <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small> | * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut] <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small> | ||
| − | |||
== FinslerTractography == | == FinslerTractography == | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | * [http://www.nitrc.org/projects/finslertract/ Finsler Backtracing] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | * [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] <small>(cli, bundled in [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] extension)</small> | ||
== GelDosimetryAnalysis == | == GelDosimetryAnalysis == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small> | ||
== GyroGuide == | == GyroGuide == | ||
| Line 2,011: | Line 2,639: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Commander] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Module Generator] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] extension)</small> | ||
| + | == MeshToLabelMap == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] extension)</small> | ||
== MultidimData == | == MultidimData == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Metafile Importer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] extension)</small> | ||
| Line 2,017: | Line 2,647: | ||
== NeedleFinder == | == NeedleFinder == | ||
* [https://github.com/gpernelle/NeedleFinder Needle Finder] <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small> | * [https://github.com/gpernelle/NeedleFinder Needle Finder] <small>(scripted, bundled in [https://github.com/gpernelle/NeedleFinder Needle Finder] extension)</small> | ||
| + | == OpenCAD == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Heterogeneity CAD] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Segment CAD] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] extension)</small> | ||
== PBNRR == | == PBNRR == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] extension)</small> | ||
| Line 2,034: | Line 2,667: | ||
== PyDevRemoteDebug == | == PyDevRemoteDebug == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] extension)</small> | ||
| + | == Reporting == | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Label To DICOMSEGConverter] <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small> | ||
| + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] extension)</small> | ||
| + | == ResectionPlanner == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Volume] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] extension)</small> | ||
== Scoliosis == | == Scoliosis == | ||
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | * [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis Monitoring] <small>(scripted, bundled in [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] extension)</small> | ||
| Line 2,039: | Line 2,677: | ||
== SegmentationAidedRegistration == | == SegmentationAidedRegistration == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] extension)</small> | ||
| + | == SlicerExtension-VMTK == | ||
| + | * [http://slicer.vmtk.org/ Centerline Computation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| + | * [http://slicer.vmtk.org/ Level Set Segmentation] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| + | * [http://slicer.vmtk.org/ Vesselness Filtering] <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small> | ||
| + | == SlicerIGT == | ||
| + | * [http://www.slicerigt.org Breach Warning] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Collect Fiducials] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Create Models] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Fiducial Registration Wizard] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Fiducials To Model Registration] <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Open IGTLink Remote] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Path Explorer] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Pivot Calibration] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Plus Remote] <small>(scripted, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Transform Fusion] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Ultrasound Snapshots] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | * [http://www.slicerigt.org Volume Reslice Driver] <small>(loadable, bundled in [http://www.slicerigt.org Slicer IGT] extension)</small> | ||
| + | == SlicerRT == | ||
| + | * [http://slicerrt.org Beams] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contour Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contour Morphology] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Contours] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Export] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Rt Import] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Sro Export] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dicom Sro Import] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Accumulation] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Comparison] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dose Volume Histogram] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Dvh Comparison] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Isodose] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Planar Image] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer bspline] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer dicomrt export] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer dicomrt import] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer landwarp] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org plastimatch slicer xformwarp] <small>(cli, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Plastimatch Py] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Plm Register] <small>(scripted, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
| + | * [http://slicerrt.org Vff File Reader] <small>(loadable, bundled in [http://slicerrt.org Slicer RT] extension)</small> | ||
== SlicerToKiwiExporter == | == SlicerToKiwiExporter == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] extension)</small> | ||
| Line 2,051: | Line 2,729: | ||
== TrackerStabilizer == | == TrackerStabilizer == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] extension)</small> | ||
| + | == UKFTractography == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ Convert VTK] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] <small>(cli, bundled in [http://www.nitrc.org/projects/ukftractography/ UKFTractography] extension)</small> | ||
| + | == VolumeClip == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Model] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small> | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip With Roi] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] extension)</small> | ||
== WindowLevelEffect == | == WindowLevelEffect == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] extension)</small> | ||
| Line 2,056: | Line 2,740: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small> | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer Xnat Slicer] <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] extension)</small> | ||
= Extensions by name = | = Extensions by name = | ||
| − | + | 54 extensions: | |
* [http://www.nitrc.org/projects/abc ABC] | * [http://www.nitrc.org/projects/abc ABC] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] | ||
| + | * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] | ||
| Line 2,067: | Line 2,753: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CurveMaker Curve Maker] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] | ||
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] | * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] | ||
| Line 2,080: | Line 2,767: | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] | ||
* [https://github.com/gpernelle/NeedleFinder Needle Finder] | * [https://github.com/gpernelle/NeedleFinder Needle Finder] | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] | ||
| Line 2,093: | Line 2,782: | ||
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] | * [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | ||
| + | * [http://slicer.vmtk.org/ VMTK] | ||
| + | * [http://www.slicerigt.org Slicer IGT] | ||
| + | * [http://slicerrt.org Slicer RT] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] | ||
| Line 2,099: | Line 2,791: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] | ||
= Extensions by category = | = Extensions by category = | ||
| − | + | 25 categories: | |
| + | * [[#Cardiac|Cardiac]] | ||
| + | * [[#Cardiac_MRI_toolkit|Cardiac MRI toolkit]] | ||
* [[#Converters|Converters]] | * [[#Converters|Converters]] | ||
* [[#Developer_Tools|Developer Tools]] | * [[#Developer_Tools|Developer Tools]] | ||
| + | * [[#Diffusion|Diffusion]] | ||
* [[#Editor_Effects|Editor Effects]] | * [[#Editor_Effects|Editor Effects]] | ||
* [[#Exporter|Exporter]] | * [[#Exporter|Exporter]] | ||
| Line 2,121: | Line 2,817: | ||
* [[#Scoliosis|Scoliosis]] | * [[#Scoliosis|Scoliosis]] | ||
* [[#Segmentation|Segmentation]] | * [[#Segmentation|Segmentation]] | ||
| + | * [[#Shape_Analysis|Shape Analysis]] | ||
* [[#Tractography|Tractography]] | * [[#Tractography|Tractography]] | ||
* [[#Training|Training]] | * [[#Training|Training]] | ||
* [[#Utilities|Utilities]] | * [[#Utilities|Utilities]] | ||
| + | * [[#Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]] | ||
* [[#Wizards|Wizards]] | * [[#Wizards|Wizards]] | ||
| + | == Cardiac == | ||
| + | * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] | ||
| + | == Cardiac MRI toolkit == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] | ||
== Converters == | == Converters == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] | ||
| Line 2,131: | Line 2,833: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] | ||
| + | == Diffusion == | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] | ||
== Editor Effects == | == Editor Effects == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] | ||
| Line 2,144: | Line 2,848: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] | ||
* [https://github.com/gpernelle/NeedleFinder Needle Finder] | * [https://github.com/gpernelle/NeedleFinder Needle Finder] | ||
| + | * [http://www.slicerigt.org Slicer IGT] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] | ||
* [https://github.com/gpernelle/iGyne i Gyne] | * [https://github.com/gpernelle/iGyne i Gyne] | ||
| Line 2,163: | Line 2,868: | ||
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] | * [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] | ||
== Radiotherapy == | == Radiotherapy == | ||
| + | * [http://slicerrt.org Slicer RT] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] | ||
== Registration == | == Registration == | ||
| Line 2,174: | Line 2,880: | ||
== Segmentation == | == Segmentation == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | ||
| − | |||
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] | * [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] | ||
| + | * [http://www.nitrc.org/projects/abc ABC] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] | ||
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] | * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] | ||
| + | == Shape Analysis == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] | ||
== Tractography == | == Tractography == | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] | * [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
== Training == | == Training == | ||
* [http://www.perktutor.org/ Perk Tutor] | * [http://www.perktutor.org/ Perk Tutor] | ||
== Utilities == | == Utilities == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ThingiverseBrowser Thingiverse Browser] | ||
| + | == Vascular Modeling Toolkit == | ||
| + | * [http://slicer.vmtk.org/ VMTK] | ||
== Wizards == | == Wizards == | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] | ||
| Line 2,194: | Line 2,906: | ||
54 contributing organizations: | 54 contributing organizations: | ||
* [[#Asclepios_INRIA.29_and_Nikos_Chrisochoides_.28CRTC|Asclepios INRIA) and Nikos Chrisochoides (CRTC]] | * [[#Asclepios_INRIA.29_and_Nikos_Chrisochoides_.28CRTC|Asclepios INRIA) and Nikos Chrisochoides (CRTC]] | ||
| + | * [[#Boston_Childrens_Hospital|Boston Childrens Hospital]] | ||
* [[#Brigham_and_Women_s_Hospital|Brigham and Women's Hospital]] | * [[#Brigham_and_Women_s_Hospital|Brigham and Women's Hospital]] | ||
* [[#BWH|BWH]] | * [[#BWH|BWH]] | ||
| Line 2,199: | Line 2,912: | ||
* [[#BWH.2C_SPL|BWH, SPL]] | * [[#BWH.2C_SPL|BWH, SPL]] | ||
* [[#BWH.2FUAB|BWH/UAB]] | * [[#BWH.2FUAB|BWH/UAB]] | ||
| + | * [[#CARMA|CARMA]] | ||
* [[#College_of_Information_Engineering.2C_Zhejiang_University_of_Technology.2C_Hangzhou.2C_China|College of Information Engineering, Zhejiang University of Technology, Hangzhou, China]] | * [[#College_of_Information_Engineering.2C_Zhejiang_University_of_Technology.2C_Hangzhou.2C_China|College of Information Engineering, Zhejiang University of Technology, Hangzhou, China]] | ||
* [[#Crisalix|Crisalix]] | * [[#Crisalix|Crisalix]] | ||
| Line 2,209: | Line 2,923: | ||
* [[#Isomics|Isomics]] | * [[#Isomics|Isomics]] | ||
* [[#Kitware|Kitware]] | * [[#Kitware|Kitware]] | ||
| + | * [[#Massachusetts_General_Hospital|Massachusetts General Hospital]] | ||
* [[#Moka_Creative_LLC.2C_Washington_University_in_St._Louis|Moka Creative LLC, Washington University in St. Louis]] | * [[#Moka_Creative_LLC.2C_Washington_University_in_St._Louis|Moka Creative LLC, Washington University in St. Louis]] | ||
* [[#NIRAL.2C_UNC|NIRAL, UNC]] | * [[#NIRAL.2C_UNC|NIRAL, UNC]] | ||
* [[#Noware|Noware]] | * [[#Noware|Noware]] | ||
| + | * [[#Orobix|Orobix]] | ||
* [[#PerkLab_at_Queen_s_University|Perk Lab at Queen's University]] | * [[#PerkLab_at_Queen_s_University|Perk Lab at Queen's University]] | ||
* [[#PerkLab.2C_Queen_s|Perk Lab, Queen's]] | * [[#PerkLab.2C_Queen_s|Perk Lab, Queen's]] | ||
| Line 2,229: | Line 2,945: | ||
* [[#Surgical_Planning_Lab|Surgical Planning Lab]] | * [[#Surgical_Planning_Lab|Surgical Planning Lab]] | ||
* [[#UAB|UAB]] | * [[#UAB|UAB]] | ||
| + | * [[#UIowa|UIowa]] | ||
* [[#UNC|UNC]] | * [[#UNC|UNC]] | ||
* [[#Univ_of_Michigan|Univ of Michigan]] | * [[#Univ_of_Michigan|Univ of Michigan]] | ||
| Line 2,239: | Line 2,956: | ||
* [[#UWA|UWA]] | * [[#UWA|UWA]] | ||
* [[#Washington_University_in_St._Louis|Washington University in St. Louis]] | * [[#Washington_University_in_St._Louis|Washington University in St. Louis]] | ||
| + | * [[#yogesh.40bwh.harvard.edu|yogesh@bwh.harvard.edu]] | ||
== Asclepios INRIA) and Nikos Chrisochoides (CRTC == | == Asclepios INRIA) and Nikos Chrisochoides (CRTC == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] | ||
| + | == Boston Childrens Hospital == | ||
| + | * [http://slicer.vmtk.org/ VMTK] | ||
== Brigham and Women's Hospital == | == Brigham and Women's Hospital == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] | ||
| + | * [http://www.slicerigt.org Slicer IGT] | ||
== BWH == | == BWH == | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] | ||
| Line 2,248: | Line 2,969: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/DiceComputation Dice Computation] | ||
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] | * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] | ||
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] | * [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | ||
| Line 2,257: | Line 2,979: | ||
== BWH/UAB == | == BWH/UAB == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | ||
| + | == CARMA == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] | ||
== College of Information Engineering, Zhejiang University of Technology, Hangzhou, China == | == College of Information Engineering, Zhejiang University of Technology, Hangzhou, China == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] | ||
| Line 2,277: | Line 3,001: | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] | * [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] | ||
| + | * [http://slicer.vmtk.org/ VMTK] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] | ||
| Line 2,284: | Line 3,009: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] | ||
| + | * [http://slicer.vmtk.org/ VMTK] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] | ||
| + | == Massachusetts General Hospital == | ||
| + | * [http://slicerrt.org Slicer RT] | ||
== Moka Creative LLC, Washington University in St. Louis == | == Moka Creative LLC, Washington University in St. Louis == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] | ||
| Line 2,291: | Line 3,019: | ||
== Noware == | == Noware == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] | ||
| + | == Orobix == | ||
| + | * [http://slicer.vmtk.org/ VMTK] | ||
== PerkLab at Queen's University == | == PerkLab at Queen's University == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] | ||
| Line 2,299: | Line 3,029: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] | ||
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] | * [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] | ||
| + | * [http://slicerrt.org Slicer RT] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] | ||
== PMH == | == PMH == | ||
| Line 2,305: | Line 3,036: | ||
* [http://www.perktutor.org/ Perk Tutor] | * [http://www.perktutor.org/ Perk Tutor] | ||
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] | * [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] | ||
| + | * [http://www.slicerigt.org Slicer IGT] | ||
== Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto == | == Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] | ||
| + | * [http://slicerrt.org Slicer RT] | ||
== SBU == | == SBU == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | ||
| Line 2,337: | Line 3,070: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SobolevSegmenter Sobolev Segmenter] | ||
| + | == UIowa == | ||
| + | * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] | ||
== UNC == | == UNC == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] | ||
== Univ of Michigan == | == Univ of Michigan == | ||
| Line 2,360: | Line 3,097: | ||
== Washington University in St. Louis == | == Washington University in St. Louis == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] | ||
| + | == yogesh@bwh.harvard.edu == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
= Extensions by contributing individual = | = Extensions by contributing individual = | ||
125 contributing individuals: | 125 contributing individuals: | ||
| Line 2,377: | Line 3,116: | ||
* [[#Arie_Nakhmani|Arie Nakhmani]] <small>(UAB)</small> | * [[#Arie_Nakhmani|Arie Nakhmani]] <small>(UAB)</small> | ||
* [[#Arnaud_Gelas|Arnaud Gelas]] <small>(Crisalix)</small> | * [[#Arnaud_Gelas|Arnaud Gelas]] <small>(Crisalix)</small> | ||
| − | * [[#Atsushi_Yamada|Atsushi Yamada]] <small>( | + | * [[#Atsushi_Yamada|Atsushi Yamada]] <small>(SNR)</small> |
* [[#Beatriz_Paniagua|Beatriz Paniagua]] <small>(UNC)</small> | * [[#Beatriz_Paniagua|Beatriz Paniagua]] <small>(UNC)</small> | ||
* [[#Bill_Lorensen|Bill Lorensen]] <small>(Noware)</small> | * [[#Bill_Lorensen|Bill Lorensen]] <small>(Noware)</small> | ||
| Line 2,383: | Line 3,122: | ||
* [[#Brig_Bagley|Brig Bagley]] <small>(SCI Institute)</small> | * [[#Brig_Bagley|Brig Bagley]] <small>(SCI Institute)</small> | ||
* [[#Carl-Fredrik_Westin|Carl-Fredrik Westin]] | * [[#Carl-Fredrik_Westin|Carl-Fredrik Westin]] | ||
| + | * [[#Christian_Baumgartner|Christian Baumgartner]] | ||
* [[#Csaba_Pinter|Csaba Pinter]] <small>(PerkLab, Queen's University)</small> | * [[#Csaba_Pinter|Csaba Pinter]] <small>(PerkLab, Queen's University)</small> | ||
* [[#Dan_Marcus|Dan Marcus]] <small>(Washington University in St. Louis)</small> | * [[#Dan_Marcus|Dan Marcus]] <small>(Washington University in St. Louis)</small> | ||
| + | * [[#Daniel_Haehn|Daniel Haehn]] <small>(UPenn)</small> | ||
* [[#Danny_Perry|Danny Perry]] <small>(Utah)</small> | * [[#Danny_Perry|Danny Perry]] <small>(Utah)</small> | ||
* [[#Demian_Wasssermann|Demian Wasssermann]] | * [[#Demian_Wasssermann|Demian Wasssermann]] | ||
* [[#Dinggang_Shen|Dinggang Shen]] <small>(UNC)</small> | * [[#Dinggang_Shen|Dinggang Shen]] <small>(UNC)</small> | ||
* [[#Ethan_Ulrich|Ethan Ulrich]] <small>(Univ. of Iowa)</small> | * [[#Ethan_Ulrich|Ethan Ulrich]] <small>(Univ. of Iowa)</small> | ||
| + | * [[#Eugene_Kholmovski|Eugene Kholmovski]] <small>(CARMA)</small> | ||
* [[#Fotis_Drakopoulos|Fotis Drakopoulos]] <small>(CRTC)</small> | * [[#Fotis_Drakopoulos|Fotis Drakopoulos]] <small>(CRTC)</small> | ||
* [[#Francois_Budin|Francois Budin]] <small>(NIRAL, UNC)</small> | * [[#Francois_Budin|Francois Budin]] <small>(NIRAL, UNC)</small> | ||
* [[#Franklin_King|Franklin King]] <small>(PerkLab, Queen's University)</small> | * [[#Franklin_King|Franklin King]] <small>(PerkLab, Queen's University)</small> | ||
* [[#Greg_Gardner|Greg Gardner]] <small>(Utah)</small> | * [[#Greg_Gardner|Greg Gardner]] <small>(Utah)</small> | ||
| + | * [[#Greg_Sharp|Greg Sharp]] <small>(MGH, Boston)</small> | ||
* [[#Guillaume_Pernelle|Guillaume Pernelle]] | * [[#Guillaume_Pernelle|Guillaume Pernelle]] | ||
| + | * [[#Hans_Johnson|Hans Johnson]] <small>(SINAPSE)</small> | ||
| + | * [[#Ipek_Oguz|Ipek Oguz]] | ||
* [[#Ivan_Kolesov|Ivan Kolesov]] <small>(Stony Brook University)</small> | * [[#Ivan_Kolesov|Ivan Kolesov]] <small>(Stony Brook University)</small> | ||
* [[#Jan_Egger|Jan Egger]] | * [[#Jan_Egger|Jan Egger]] | ||
| Line 2,399: | Line 3,144: | ||
* [[#Jean-Christophe_Fillion-Robin|Jean-Christophe Fillion-Robin]] <small>(Kitware)</small> | * [[#Jean-Christophe_Fillion-Robin|Jean-Christophe Fillion-Robin]] <small>(Kitware)</small> | ||
* [[#Jennifer_Andrea|Jennifer Andrea]] <small>(PerkLab, Queen's University)</small> | * [[#Jennifer_Andrea|Jennifer Andrea]] <small>(PerkLab, Queen's University)</small> | ||
| + | * [[#Jessica_Forbes|Jessica Forbes]] <small>(SINAPSE)</small> | ||
* [[#Jiashu_Zhang|Jiashu Zhang]] <small>(Department of Neurosurgery, PLA General Hospital, Beijing, China)</small> | * [[#Jiashu_Zhang|Jiashu Zhang]] <small>(Department of Neurosurgery, PLA General Hospital, Beijing, China)</small> | ||
* [[#Jim_Miller|Jim Miller]] <small>(GE)</small> | * [[#Jim_Miller|Jim Miller]] <small>(GE)</small> | ||
| Line 2,406: | Line 3,152: | ||
* [[#Junichi_Tokuda|Junichi Tokuda]] <small>(BWH)</small> | * [[#Junichi_Tokuda|Junichi Tokuda]] <small>(BWH)</small> | ||
* [[#Karl_Fritscher|Karl Fritscher]] <small>(BWH & MGH)</small> | * [[#Karl_Fritscher|Karl Fritscher]] <small>(BWH & MGH)</small> | ||
| − | * [[#Kevin_Wang|Kevin Wang]] <small>( | + | * [[#Kent_Williams|Kent Williams]] <small>(UIowa)</small> |
| + | * [[#Kevin_Wang|Kevin Wang]] <small>(Princess Margaret Cancer Centre)</small> | ||
* [[#Kilian_Pohl|Kilian Pohl]] <small>(UPenn)</small> | * [[#Kilian_Pohl|Kilian Pohl]] <small>(UPenn)</small> | ||
| − | * [[#Koichiro_Murakami|Koichiro Murakami]] <small>( | + | * [[#Koichiro_Murakami|Koichiro Murakami]] <small>(SUMS)</small> |
* [[#Lauren_Barber|Lauren Barber]] | * [[#Lauren_Barber|Lauren Barber]] | ||
* [[#Laurent_Chauvin|Laurent Chauvin]] <small>(BWH)</small> | * [[#Laurent_Chauvin|Laurent Chauvin]] <small>(BWH)</small> | ||
* [[#Liang-Jia_Zhu|Liang-Jia Zhu]] <small>(UAB)</small> | * [[#Liang-Jia_Zhu|Liang-Jia Zhu]] <small>(UAB)</small> | ||
* [[#Liangjia_Zhu|Liangjia Zhu]] <small>(Stony Brook University)</small> | * [[#Liangjia_Zhu|Liangjia Zhu]] <small>(Stony Brook University)</small> | ||
| + | * [[#Luca_Antiga|Luca Antiga]] <small>(Orobix)</small> | ||
* [[#Luis_G._Torres|Luis G. Torres]] <small>(UNC)</small> | * [[#Luis_G._Torres|Luis G. Torres]] <small>(UNC)</small> | ||
* [[#Luping_Fang|Luping Fang]] <small>(College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)</small> | * [[#Luping_Fang|Luping Fang]] <small>(College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)</small> | ||
| Line 2,418: | Line 3,166: | ||
* [[#Manson_Winsauer|Manson Winsauer]] <small>(UNC)</small> | * [[#Manson_Winsauer|Manson Winsauer]] <small>(UNC)</small> | ||
* [[#Marcel_Prastawa|Marcel Prastawa]] <small>(University of Utah)</small> | * [[#Marcel_Prastawa|Marcel Prastawa]] <small>(University of Utah)</small> | ||
| + | * [[#Martin_Styner|Martin Styner]] <small>(UNC)</small> | ||
* [[#Matt_Lougheed|Matt Lougheed]] <small>(PerkLab, Queen's University)</small> | * [[#Matt_Lougheed|Matt Lougheed]] <small>(PerkLab, Queen's University)</small> | ||
* [[#Mattea_Welch|Mattea Welch]] <small>(PerkLab, Queen's University)</small> | * [[#Mattea_Welch|Mattea Welch]] <small>(PerkLab, Queen's University)</small> | ||
| Line 2,431: | Line 3,180: | ||
* [[#Olivier_Clatz|Olivier Clatz]] <small>(Asclepios INRIA) and Nikos Chrisochoides (CRTC)</small> | * [[#Olivier_Clatz|Olivier Clatz]] <small>(Asclepios INRIA) and Nikos Chrisochoides (CRTC)</small> | ||
* [[#Pat_Marion|Pat Marion]] <small>(Kitware)</small> | * [[#Pat_Marion|Pat Marion]] <small>(Kitware)</small> | ||
| − | * [[#Patricio_Vela|Patricio Vela]] <small>( | + | * [[#Patricio_Vela|Patricio Vela]] <small>(GT)</small> |
* [[#Paul_Mercea|Paul Mercea]] <small>(University of Heidelberg)</small> | * [[#Paul_Mercea|Paul Mercea]] <small>(University of Heidelberg)</small> | ||
* [[#Pengdong_Xiao|Pengdong Xiao]] <small>(Department of Orthodontics, UNC)</small> | * [[#Pengdong_Xiao|Pengdong Xiao]] <small>(Department of Orthodontics, UNC)</small> | ||
| Line 2,443: | Line 3,192: | ||
* [[#Ron_Kikinis|Ron Kikinis]] <small>(BWH)</small> | * [[#Ron_Kikinis|Ron Kikinis]] <small>(BWH)</small> | ||
* [[#Ruifeng_Chen|Ruifeng Chen]] <small>(College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)</small> | * [[#Ruifeng_Chen|Ruifeng Chen]] <small>(College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)</small> | ||
| + | * [[#Ryan_Eckbo|Ryan Eckbo]] | ||
* [[#S|S]] | * [[#S|S]] | ||
| + | * [[#Salma_Bengali|Salma Bengali]] <small>(CARMA)</small> | ||
* [[#Sam_Song|Sam Song]] | * [[#Sam_Song|Sam Song]] | ||
* [[#Stefan_Bauer|Stefan Bauer]] <small>(University of Bern)</small> | * [[#Stefan_Bauer|Stefan Bauer]] <small>(University of Bern)</small> | ||
| − | * [[#Steve_Pieper|Steve Pieper]] <small>( | + | * [[#Stefan_Lienhard|Stefan Lienhard]] |
| + | * [[#Steve_Pieper|Steve Pieper]] <small>(SPL)</small> | ||
* [[#Sunil_Kumar|Sunil Kumar]] <small>(Moka Creative, LLC, kumar.sunil.p@gmail.com)</small> | * [[#Sunil_Kumar|Sunil Kumar]] <small>(Moka Creative, LLC, kumar.sunil.p@gmail.com)</small> | ||
* [[#Sylvain_Bouix|Sylvain Bouix]] <small>(BWH)</small> | * [[#Sylvain_Bouix|Sylvain Bouix]] <small>(BWH)</small> | ||
| Line 2,454: | Line 3,206: | ||
* [[#Tobias_Penzkofer|Tobias Penzkofer]] | * [[#Tobias_Penzkofer|Tobias Penzkofer]] | ||
* [[#Vinicius_Boen|Vinicius Boen]] <small>(Univ of Michigan)</small> | * [[#Vinicius_Boen|Vinicius Boen]] <small>(Univ of Michigan)</small> | ||
| + | * [[#Vivek_Narayan|Vivek Narayan]] <small>(BWH)</small> | ||
* [[#Xiaofeng_Liu|Xiaofeng Liu]] <small>(GE GLobal Research)</small> | * [[#Xiaofeng_Liu|Xiaofeng Liu]] <small>(GE GLobal Research)</small> | ||
* [[#Xiaojun_Chen|Xiaojun Chen]] | * [[#Xiaojun_Chen|Xiaojun Chen]] | ||
| Line 2,460: | Line 3,213: | ||
* [[#Yi_Gao|Yi Gao]] <small>(BWH/UAB)</small> | * [[#Yi_Gao|Yi Gao]] <small>(BWH/UAB)</small> | ||
* [[#Yingxuan_Zhu|Yingxuan Zhu]] <small>(GE)</small> | * [[#Yingxuan_Zhu|Yingxuan Zhu]] <small>(GE)</small> | ||
| + | * [[#Yinpeng_Li|Yinpeng Li]] | ||
* [[#Yixun_Liu|Yixun Liu]] <small>(CRTC)</small> | * [[#Yixun_Liu|Yixun Liu]] <small>(CRTC)</small> | ||
| + | * [[#Yogesh_Rathi|Yogesh Rathi]] <small>(yogesh@bwh.harvard.edu)</small> | ||
| + | * [[#Yundi_Shi|Yundi Shi]] | ||
== Akila Viswanathan == | == Akila Viswanathan == | ||
* [https://github.com/gpernelle/iGyne i Gyne] | * [https://github.com/gpernelle/iGyne i Gyne] | ||
* [https://github.com/gpernelle/NeedleFinder Needle Finder] | * [https://github.com/gpernelle/NeedleFinder Needle Finder] | ||
== Alan Morris == | == Alan Morris == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | ||
| Line 2,485: | Line 3,242: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PyDevRemoteDebug Py Dev Remote Debug] | ||
| + | * [http://slicerrt.org Slicer RT] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/VolumeClip Volume Clip] | ||
| Line 2,523: | Line 3,281: | ||
== Carl-Fredrik Westin == | == Carl-Fredrik Westin == | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] | * [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
| + | == Christian Baumgartner == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
== Csaba Pinter == | == Csaba Pinter == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] | ||
| + | * [http://slicerrt.org Slicer RT] | ||
== Dan Marcus == | == Dan Marcus == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] | ||
| + | == Daniel Haehn == | ||
| + | * [http://slicer.vmtk.org/ VMTK] | ||
== Danny Perry == | == Danny Perry == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | ||
| Line 2,536: | Line 3,300: | ||
== Ethan Ulrich == | == Ethan Ulrich == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] | ||
| + | == Eugene Kholmovski == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] | ||
== Fotis Drakopoulos == | == Fotis Drakopoulos == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] | ||
== Francois Budin == | == Francois Budin == | ||
| + | * [http://www.nitrc.org/projects/dti_tract_stat DTIAtlas Fiber Analyzer] | ||
* [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] | * [http://www.nitrc.org/projects/dentaltools/ Intensity Segmenter] | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MeshToLabelMap Mesh To Label Map] | ||
== Franklin King == | == Franklin King == | ||
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] | * [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] | ||
| Line 2,546: | Line 3,314: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | ||
| + | == Greg Sharp == | ||
| + | * [http://slicerrt.org Slicer RT] | ||
== Guillaume Pernelle == | == Guillaume Pernelle == | ||
* [https://github.com/gpernelle/iGyne i Gyne] | * [https://github.com/gpernelle/iGyne i Gyne] | ||
* [https://github.com/gpernelle/NeedleFinder Needle Finder] | * [https://github.com/gpernelle/NeedleFinder Needle Finder] | ||
| + | == Hans Johnson == | ||
| + | * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
| + | == Ipek Oguz == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
== Ivan Kolesov == | == Ivan Kolesov == | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] | ||
| Line 2,556: | Line 3,331: | ||
* [https://github.com/gpernelle/NeedleFinder Needle Finder] | * [https://github.com/gpernelle/NeedleFinder Needle Finder] | ||
== Jayender Jagadeesan == | == Jayender Jagadeesan == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/TrackerStabilizer Tracker Stabilizer] | ||
== Jean-Christophe Fillion-Robin == | == Jean-Christophe Fillion-Robin == | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] | ||
| + | * [http://slicer.vmtk.org/ VMTK] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] | ||
== Jennifer Andrea == | == Jennifer Andrea == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] | ||
| + | == Jessica Forbes == | ||
| + | * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] | ||
== Jiashu Zhang == | == Jiashu Zhang == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] | ||
| Line 2,571: | Line 3,350: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CleaverExtension Cleaver Extension] | ||
== Josh Cates == | == Josh Cates == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | ||
| Line 2,579: | Line 3,359: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ErodeDilateLabel Erode Dilate Label] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/PercutaneousApproachAnalysis Percutaneous Approach Analysis] | ||
| + | * [http://www.slicerigt.org Slicer IGT] | ||
== Karl Fritscher == | == Karl Fritscher == | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] | ||
| + | == Kent Williams == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
== Kevin Wang == | == Kevin Wang == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MatlabBridge Matlab Bridge] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MultidimData Multidim Data] | ||
| + | * [http://slicerrt.org Slicer RT] | ||
== Kilian Pohl == | == Kilian Pohl == | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/ChangeTracker Change Tracker] | ||
| Line 2,601: | Line 3,385: | ||
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] | * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | ||
| + | == Luca Antiga == | ||
| + | * [http://slicer.vmtk.org/ VMTK] | ||
== Luis G. Torres == | == Luis G. Torres == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PortPlacement Port Placement] | ||
| Line 2,611: | Line 3,397: | ||
== Marcel Prastawa == | == Marcel Prastawa == | ||
* [http://www.nitrc.org/projects/abc ABC] | * [http://www.nitrc.org/projects/abc ABC] | ||
| + | == Martin Styner == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
== Matt Lougheed == | == Matt Lougheed == | ||
* [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] | * [http://www.slicer.org/slicerWiki/index.php?title=Documentation/Nightly/Extensions/ResectionPlanner Resection Planner] | ||
| Line 2,651: | Line 3,439: | ||
== Peter Savadjiev == | == Peter Savadjiev == | ||
* [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] | * [http://www.nitrc.org/projects/finslertract/ Finsler Tractography] | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
== Pietro Nardelli == | == Pietro Nardelli == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] | ||
| Line 2,658: | Line 3,447: | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/XNATSlicer XNATSlicer] | ||
== Rob MacLeod == | == Rob MacLeod == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/LAScarSegmenter LAScar Segmenter] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] | ||
| Line 2,665: | Line 3,455: | ||
== Ruifeng Chen == | == Ruifeng Chen == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/GyroGuide Gyro Guide] | ||
| + | == Ryan Eckbo == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
== S == | == S == | ||
* [https://github.com/gpernelle/iGyne i Gyne] | * [https://github.com/gpernelle/iGyne i Gyne] | ||
* [https://github.com/gpernelle/NeedleFinder Needle Finder] | * [https://github.com/gpernelle/NeedleFinder Needle Finder] | ||
| + | == Salma Bengali == | ||
| + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] | ||
== Sam Song == | == Sam Song == | ||
* [https://github.com/gpernelle/iGyne i Gyne] | * [https://github.com/gpernelle/iGyne i Gyne] | ||
| Line 2,673: | Line 3,467: | ||
== Stefan Bauer == | == Stefan Bauer == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] | ||
| + | == Stefan Lienhard == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
== Steve Pieper == | == Steve Pieper == | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2/Modules/Reporting Reporting] | ||
| + | * [http://slicer.vmtk.org/ VMTK] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SlicerToKiwiExporter Slicer To Kiwi Exporter] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/WindowLevelEffect Window Level Effect] | ||
| Line 2,686: | Line 3,483: | ||
* [http://www.perktutor.org/ Perk Tutor] | * [http://www.perktutor.org/ Perk Tutor] | ||
* [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] | * [https://www.assembla.com/spaces/Scoliosis/wiki Scoliosis] | ||
| + | * [http://www.slicerigt.org Slicer IGT] | ||
== Thomas Fejes == | == Thomas Fejes == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/SwissSkullStripper Swiss Skull Stripper] | ||
| Line 2,696: | Line 3,494: | ||
== Vinicius Boen == | == Vinicius Boen == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/CMFreg CMFreg] | ||
| + | == Vivek Narayan == | ||
| + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/OpenCAD Open CAD] | ||
== Xiaofeng Liu == | == Xiaofeng Liu == | ||
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/MABMIS MABMIS] | ||
| Line 2,715: | Line 3,515: | ||
== Yingxuan Zhu == | == Yingxuan Zhu == | ||
* [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] | * [https://github.com/millerjv/PkModeling/wiki/PkModeling Pk Modeling] | ||
| + | == Yinpeng Li == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
== Yixun Liu == | == Yixun Liu == | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/CBC_3D_I2MConversion CBC 3D I2MConversion] | ||
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PBNRR PBNRR] | ||
| + | == Yogesh Rathi == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
| + | == Yundi Shi == | ||
| + | * [http://www.nitrc.org/projects/ukftractography/ UKFTractography] | ||
Revision as of 07:21, 24 December 2014
- Modules by name
- Modules by category
- Modules by contributing organization
- Modules by contributing individual
- Modules by type
- Modules by extension
- Extensions by name
- Extensions by category
- Extensions by contributing organization
- Extensions by contributing individual
List of extensions known to be broken
Modules by name
215 modules:
- ABC (cli, bundled in ABC extension)
- ACPCTransform (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- Annotations (loadable, built-in)
- Apply Matrix (cli, bundled in CMFreg extension)
- Beams (loadable, bundled in Slicer RT extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- BRAINSDemon Warp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabel Stats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSStrip Rotation (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Cast Scalar Volume (cli, built-in)
- Centerline Computation (scripted, bundled in VMTK extension)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Checker Board Filter (cli, built-in)
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Colors (loadable, built-in)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Contour Comparison (loadable, bundled in Slicer RT extension)
- Contour Morphology (loadable, bundled in Slicer RT extension)
- Contours (loadable, bundled in Slicer RT extension)
- Convert VTK (cli, bundled in UKFTractography extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Create DICOMSeries (cli, built-in)
- Create Models (loadable, bundled in Slicer IGT extension)
- Crop Volume (loadable, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Data (loadable, built-in)
- Data Probe (scripted, built-in)
- Data Store (loadable, built-in)
- Dice Computation (loadable, bundled in Dice Computation extension)
- DICOM (scripted, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
- Dicom Rt Export (loadable, bundled in Slicer RT extension)
- Dicom Rt Import (loadable, bundled in Slicer RT extension)
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Dilate Label (cli, bundled in Erode Dilate Label extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
- Downsize (cli, bundled in CMFreg extension)
- DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- DWIConvert (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- EMSegment (loadable, built-in)
- EMSegment Command Line (cli, built-in)
- EMSegment Quick (loadable, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Endoscopy (scripted, built-in)
- Erode Label (cli, bundled in Erode Dilate Label extension)
- Extract Skeleton (cli, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Fiber Bundle Label Select (cli, built-in)
- Fiber Bundle To Label Map (scripted, built-in)
- Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Fiducial Registration (cli, built-in)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Gaussian Blur Image Filter (cli, built-in)
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Growing (cli, bundled in CMFreg extension)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- Histogram Matching (cli, built-in)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
- i Gyne (scripted, bundled in i Gyne extension)
- Image Label Combine (cli, built-in)
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- Isodose (loadable, bundled in Slicer RT extension)
- KUtil (scripted, bundled in Carrera Slice extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Map Smoothing (cli, built-in)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
- Landmark Registration (scripted, bundled in CMFreg extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- Markups (loadable, built-in)
- Mask Creation (cli, bundled in CMFreg extension)
- Mask Scalar Volume (cli, built-in)
- Median Image Filter (cli, built-in)
- Merge Models (cli, built-in)
- Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Model Maker (cli, built-in)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Non Growing (cli, bundled in CMFreg extension)
- Open IGTLink IF (loadable, built-in)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Orient Scalar Volume (cli, built-in)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- PBNRR (cli, bundled in PBNRR extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Perform Metric Test (cli, built-in)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Planar Image (loadable, bundled in Slicer RT extension)
- plastimatch slicer bspline (cli, bundled in Slicer RT extension)
- plastimatch slicer dicomrt export (cli, bundled in Slicer RT extension)
- plastimatch slicer dicomrt import (cli, bundled in Slicer RT extension)
- plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
- plastimatch slicer xformwarp (cli, bundled in Slicer RT extension)
- Plastimatch Py (loadable, bundled in Slicer RT extension)
- Plm Register (scripted, bundled in Slicer RT extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- Port Placement (scripted, bundled in Port Placement extension)
- Probe Volume With Model (cli, built-in)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Reformat (loadable, built-in)
- Reporting (loadable, bundled in Reporting extension)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
- Resection Volume (scripted, bundled in Resection Planner extension)
- Robust Statistics Segmenter (cli, built-in)
- Sample Data (scripted, built-in)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- Scene Views (loadable, built-in)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Segment CAD (scripted, bundled in Open CAD extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
- Simple Filters (scripted, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Subject Hierarchy (loadable, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Surface Registration (scripted, bundled in CMFreg extension)
- Surface Toolbox (scripted, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
- Threshold Scalar Volume (cli, built-in)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Tractography Display (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
- Tractography Label Map Seeding (cli, built-in)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Transforms (loadable, built-in)
- UKFTractography (cli, bundled in UKFTractography extension)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Units (loadable, built-in)
- VBRAINSDemon Warp (cli, built-in)
- Vector To Scalar Volume (scripted, built-in)
- Vesselness Filtering (scripted, bundled in VMTK extension)
- Vff File Reader (loadable, bundled in Slicer RT extension)
- View Controllers (loadable, built-in)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Volume Rendering (loadable, built-in)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
- Volumes (loadable, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- Welcome (loadable, built-in)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Modules by category
36 categories:
- BRAINS
- Cardiac MRI Toolkit
- CMF Registration
- Converters
- Developer Tools
- Diffusion
- Editor Effects
- Endoscopy
- Examples
- Exporter
- File
- Filtering
- IGT
- Informatics
- Legacy
- Mesh Generation
- Mesh Generation
- Microscopy
- Multidimensional data
- Multi Volume Support
- Perk Tutor
- Plastimatch
- Quantification
- Radiotherapy
- Registration
- Segmentation
- Shape Analysis
- Slicelets
- Surface Models
- Testing
- Unspecified
- Utilities
- Vascular Modeling Toolkit
- Wizards
- Work in Progress
- XNATSlicer
BRAINS
LabelStatistics
- BRAINSLabel Stats
Cardiac MRI Toolkit
- CMRToolkit Connected Threshold Filter
- CMRToolkit Isolated Connected Filter
- CMRToolkit Wizard
- CMRToolkit Inhomogeneity Correction
- CMRToolkit PVAntrum Cut
- CMRToolkit Axial Dilate
- Scar Visualization
- CMRToolkit Boolean REMOVEFilter
- LASegmentation Workflow
- CMRToolkit Automatic Left Atrial Scar
- CMRToolkit Registration
- CMRToolkit Registration BRAINSFit
CMF Registration
Voxelbase Registration
Converters
- Vector To Scalar Volume
- Crop Volume
- Orient Scalar Volume
- Create DICOMSeries
Developer Tools
- Event Broker
- Execution Model Tour
- Double Arrays
- Py Dev Remote Debug
- Cameras
- Extension Wizard
- Image Maker
DICOM Plugins
- DICOMLongitudinal PETCTPlugin
- DICOMRWVMPlugin
- Multi Volume Importer Plugin
- DICOMPETSUVPlugin
- Dicom Rt Import Plugin
- DICOMDiffusion Volume Plugin
- DICOMSegmentation Plugin
- Dicom Sro Import Plugin
- DICOMScalar Volume Plugin
- DICOMSlicer Data Bundle Plugin
Editor Extensions
Matlab
Diffusion
- Tractography Display
- DICOM2Full Brain Tractography
Diffusion Data Conversion
- DWIConvert
Diffusion Tensor Images
- Resample DTIVolume
- Diffusion Tensor Scalar Measurements
- Tractography Label Map Seeding
- Tractography Interactive Seeding
Diffusion Weighted Images
- DWIRician LMMSEFilter
- Resample Scalar Vector DWIVolume
- DWIJoint Rician LMMSEFilter
- DWITo DTIEstimation
- Finsler Tractography
- Finsler Backtracing
- Diffusion Weighted Volume Masking
FiberAnalysis
Tractography
- Fiber Bundle To Label Map
- UKFTractography
- Fiber Bundle Label Select
Editor Effects
Endoscopy
- Endoscopy
Examples
Exporter
File
Filtering
- Extract Skeleton
- Threshold Scalar Volume
- N4ITKBias Field Correction
- Simple Filters
- Image Label Combine
- Voting Binary Hole Filling Image Filter
- Histogram Matching
- Checker Board Filter
Arithmetic
- Multiply Scalar Volumes
- Add Scalar Volumes
- Cast Scalar Volume
- Subtract Scalar Volumes
- Mask Scalar Volume
Denoising
- Gradient Anisotropic Diffusion
- Median Image Filter
- Gaussian Blur Image Filter
- Curvature Anisotropic Diffusion
Morphology
- Grayscale Fill Hole Image Filter
- Erode Label
- Dilate Label
- Grayscale Grind Peak Image Filter
IGT
- Resection Volume
- Volume Reslice Driver
- Collect Fiducials
- Percutaneous Approach Analysis
- Create Models
- Port Placement
- Open IGTLink IF
- Tracker Stabilizer
- Path Explorer
- Ultrasound Snapshots
- Transform Fusion
- Breach Warning
- Gyro Guide
- Fiducial Registration Wizard
- Open IGTLink Remote
- Plus Remote
- i Gyne
- Needle Finder
- Fiducials To Model Registration
- Pivot Calibration
- Corner Annotation
Informatics
- Annotations
- Markups
- Units
- DICOM
- Sample Data
- Subject Hierarchy
- Data
- Colors
- Curve Maker
- TCIABrowser
Legacy
Converters
- BSpline To Deformation Field
Diffusion
Denoising
- DWIUnbiased Non Local Means Filter
Diffusion Data Conversion
- DTIimport
- DTIexport
Filtering
- Otsu Threshold Image Filter
- Resample Scalar Volume
Registration
- Test Grid Transform Registration
- Expert Automated Registration
Work in Progress
Diffusion Tensor
Test
- Diffusion Tensor Test
Mesh Generation
MeshGeneration
Microscopy
Multidimensional data
MultiVolume Support
- Multi Volume Explorer
- Multi Volume Importer
Perk Tutor
Plastimatch
Registration
Utilities
Quantification
- PETStandard Uptake Value Computation
- SUVFactor Calculator
- Spinal Curvature Measurement
- Pk Modeling
- Heterogeneity CAD
- PETSUVImage Maker
- Dice Computation
- Data Probe
ChangeQuantification
Radiotherapy
- Contour Comparison
- Dicom Rt Import
- Beams
- Dvh Comparison
- Isodose
- Contours
- Dose Accumulation
- Dicom Rt Export
- Dose Comparison
- Contour Morphology
- Planar Image
- Dicom Sro Import
- Dose Volume Histogram
Registration
- BRAINSResample
- Transforms
- BRAINSResize
- BRAINSFit
- PBNRR
- Perform Metric Test
Specialized
- ACPCTransform
- Fiducial Registration
- VBRAINSDemon Warp
- BRAINSDemon Warp
- Reformat
Segmentation
- IGR3D MABMIS Training
- ABC
- EMSegment Quick
- Simple Region Growing Segmentation
- Intensity Segmenter
- EMSegment
- Volume Clip With Roi
- Segment CAD
- Swiss Skull Stripper
- Airway Segmentation CLI
- LAScar Segmenter
- Sobolev Segmenter
- Volume Clip With Model
- IGR3D MABMIS Testing
Specialized
- EMSegment Command Line
- Robust Statistics Segmenter
- BRAINSROIAuto
Shape Analysis
Slicelets
Surface Models
- Surface Toolbox
- Model To Label Map
- Merge Models
- Probe Volume With Model
- Grayscale Model Maker
- Label Map Smoothing
- Model Maker
Testing
- Self Tests
- CLIROITest
- CLI4Test
- Threshold Threading Test
- Scoliosis Monitoring
- Performance Tests
- Slicer MRBTest
IGT Tests
- Breach Warning Self Test
SlicerRT Tests
- NAMIC Tutorial 2013June Self Test
- Dicom Rt Import Self Test
TestCases
- Slice Link Logic
- Atlas Tests
- RSNAQuant Tutorial
- Volume Rendering Scene Close
- test tractography display
- slicer Close Crash Bug2590
- Subject Hierarchy Generic Self Test
- View Controllers Slice Interpolation Bug1926
- Charting
- Scene Performance
- Markups In Compare Viewers Self Test
- Cardiac Agatston Measures
- fiber visibility crash2438
- scene Import2428
- RSNAVis Tutorial
- JRC2013Vis
- RSNA2012Prostate Demo
- Add Many Markups Fiducial Test
- Neurosurgical Planning Tutorial Markups Self Test
- Colors Scalar Bar Self Test
- Markups In Views Self Test
- Subject Hierarchy Core Plugins Self Test
- Change Tracker Self Test
- Fiducial Layout Switch Bug1914
- Slicer4Minute
- label Toggle Bug2049
Unspecified
- BRAINSDWICleanup
Utilities
- Thingiverse Browser
- BRAINSStrip Rotation
- EMSegment Transform To New Format
- Data Store
BRAINS
- BRAINSTransform Convert
Vascular Modeling Toolkit
Wizards
Work in Progress
Converters
Informatics
TestCases
- Reporting Self Test
- Label To DICOMSEGConverter Self Test
XNATSlicer
Modules by contributing organization
71 contributing organizations:
- Asclepios INRIA
- AZE R&D
- Boston Children's Hospital
- Brigham and Women's Hospital
- BWH
- BWH, SPL
- BWH, SUMS
- BWH/UAB
- CARMA
- College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China
- CRTC
- gatech
- GE
- Georgia Tech
- IBM
- Isomics
- Isomics Inc.
- Isomics, pieper@isomics.com
- Kingston General Hospital
- Kitware
- Kitware)
- MGH
- MGH, Boston
- Moka Creative, LLC, kumar.sunil.p@gmail.com
- MSC/NLM
- Noware
- Orobix
- Perk Lab at Queen's University
- Perk Lab, Queen's
- Perk Lab, Queen's University
- PMH
- PMH, Toronto
- Princess Margaret Cancer Centre
- Queen's
- Queen's Universit
- Queen's University
- Queen's University) Jaime Garcia-Guevara (Queen's University
- Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
- RMP, PMH
- SAIC-Frederick, NCI-Frederick
- SBU
- SCI Institute
- Shiga University of Medical Science in Japan
- Shiga University of Medical Science, Japan, SPL
- SINAPSE
- SNR
- SPL
- SPL B&W Harvard
- SPL, BWH
- SPL, BWH, UPenn
- SUMS
- Surgical Planning Lab
- UAB
- UHN, Toronto
- Uiowa
- UIowa
- UNC
- Univ of Michigan
- Univ. of Iowa
- University 'Magna Graecia' of Catanzaro
- University College Cork
- University of Heidelberg
- University of Iowa
- University of Iowa) and Andrey Fedorov (SPL
- UPenn
- Utah
- UVa
- UWA
- Wash U-St. Louis, dmarcus@wustl.edu
- while at GE
Asclepios INRIA
AZE R&D
- JRC2013Vis
Boston Children's Hospital
- Centerline Computation (scripted, bundled in VMTK extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
- Vesselness Filtering (scripted, bundled in VMTK extension)
Brigham and Women's Hospital
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Surface Toolbox (scripted, built-in)
- test tractography display
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
BWH
- Add Many Markups Fiducial Test
- Change Tracker Self Test
- Colors Scalar Bar Self Test
- Curve Maker (scripted, bundled in Curve Maker extension)
- Dice Computation (loadable, bundled in Dice Computation extension)
- DICOMRWVMPlugin
- Fiducial Layout Switch Bug1914
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- Markups (loadable, built-in)
- Markups In Compare Viewers Self Test
- Markups In Views Self Test
- Neurosurgical Planning Tutorial Markups Self Test
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Segment CAD (scripted, bundled in Open CAD extension)
- Volume Rendering Scene Close (scripted, built-in)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
BWH, SPL
- Crop Volume (loadable, built-in)
BWH, SUMS
- Corner Annotation (scripted, bundled in Corner Annotation extension)
BWH/UAB
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
CARMA
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China
- Gyro Guide (scripted, bundled in Gyro Guide extension)
CRTC
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- PBNRR (cli, bundled in PBNRR extension)
gatech
- Robust Statistics Segmenter (cli, built-in)
GE
- Add Scalar Volumes (cli, built-in)
- Charting (scripted, built-in)
- Checker Board Filter (cli, built-in)
- Create DICOMSeries (cli, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Diffusion Tensor Test (cli, built-in)
- DWIConvert (cli, built-in)
- Execution Model Tour (cli, built-in)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Histogram Matching (cli, built-in)
- Label Map Smoothing (cli, built-in)
- Median Image Filter (cli, built-in)
- Model Maker (cli, built-in)
- Model To Label Map (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- Orient Scalar Volume (cli, built-in)
- Otsu Threshold Image Filter (cli, built-in)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Resample Scalar Volume (cli, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- Slice Link Logic (scripted, built-in)
- Slicer4Minute (scripted, built-in)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Subtract Scalar Volumes (cli, built-in)
- View Controllers (loadable, built-in)
- View Controllers Slice Interpolation Bug1926
- Voting Binary Hole Filling Image Filter (cli, built-in)
Georgia Tech
- Carrera Slice (loadable, bundled in Carrera Slice extension)
IBM
- Annotations (loadable, built-in)
Isomics
- Atlas Tests
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Centerline Computation (scripted, bundled in VMTK extension)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Data (loadable, built-in)
- Data Probe (scripted, built-in)
- DICOM (scripted, built-in)
- Endoscopy (scripted, built-in)
- fiber visibility crash2438
- Fiber Bundle To Label Map (scripted, built-in)
- label Toggle Bug2049
- Landmark Registration (scripted, bundled in CMFreg extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
- Models (loadable, built-in)
- Performance Tests
- Reporting (loadable, bundled in Reporting extension)
- RSNA2012Prostate Demo
- RSNAQuant Tutorial
- RSNAVis Tutorial
- Sample Data (scripted, built-in)
- scene Import2428
- Self Tests
- Simple Filters (scripted, built-in)
- slicer Close Crash Bug2590
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Tractography Interactive Seeding (loadable, built-in)
- Transforms (loadable, built-in)
- Vector To Scalar Volume (scripted, built-in)
- Vesselness Filtering (scripted, bundled in VMTK extension)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
Isomics Inc.
- DICOMDiffusion Volume Plugin
- DICOMLongitudinal PETCTPlugin
- DICOMScalar Volume Plugin
- DICOMSlicer Data Bundle Plugin
- Slicer MRBTest
- Threshold Threading Test
Isomics, pieper@isomics.com
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Kingston General Hospital
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
Kitware
- Cameras (loadable, built-in)
- Colors (loadable, built-in)
- Data (loadable, built-in)
- Data Store (loadable, built-in)
- Double Arrays (loadable, built-in)
- Event Broker
- Expert Automated Registration (cli, built-in)
- Extension Wizard (scripted, built-in)
- Extract Skeleton (cli, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- fiber visibility crash2438
- Fiducial Registration (cli, built-in)
- Gaussian Blur Image Filter (cli, built-in)
- Image Maker (cli, bundled in Image Maker extension)
- label Toggle Bug2049
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Models (loadable, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Port Placement (scripted, bundled in Port Placement extension)
- Reformat (loadable, built-in)
- Sample Data (scripted, built-in)
- Scene Performance (scripted, built-in)
- Simple Filters (scripted, built-in)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Threshold Scalar Volume (cli, built-in)
- Tractography Display (loadable, built-in)
- Transforms (loadable, built-in)
- Units (loadable, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
- Welcome (loadable, built-in)
Kitware)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
MGH
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Plm Register (scripted, bundled in Slicer RT extension)
MGH, Boston
- Dicom Rt Export (loadable, bundled in Slicer RT extension)
Moka Creative, LLC, kumar.sunil.p@gmail.com
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
MSC/NLM
- Label Object Statistics (scripted, bundled in IASEM extension)
- Simple Filters (scripted, built-in)
Noware
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
Orobix
- Centerline Computation (scripted, bundled in VMTK extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
- Surface Toolbox (scripted, built-in)
- Vesselness Filtering (scripted, bundled in VMTK extension)
PerkLab at Queen's University
- Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
PerkLab, Queen's
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
- Transforms (loadable, built-in)
PerkLab, Queen's University
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
PMH
- Colors Scalar Bar Self Test
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
PMH, Toronto
- Dicom Rt Export (loadable, bundled in Slicer RT extension)
- Isodose (loadable, bundled in Slicer RT extension)
Princess Margaret Cancer Centre
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
Queen's
- Beams (loadable, bundled in Slicer RT extension)
- Contour Comparison (loadable, bundled in Slicer RT extension)
- Contour Morphology (loadable, bundled in Slicer RT extension)
- Contours (loadable, bundled in Slicer RT extension)
- Data (loadable, built-in)
- Dicom Rt Export (loadable, bundled in Slicer RT extension)
- Dicom Rt Import (loadable, bundled in Slicer RT extension)
- Dicom Rt Import Self Test
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Isodose (loadable, bundled in Slicer RT extension)
- NAMIC Tutorial 2013June Self Test
- Planar Image (loadable, bundled in Slicer RT extension)
- Subject Hierarchy (loadable, built-in)
- Subject Hierarchy Core Plugins Self Test
- Subject Hierarchy Generic Self Test
- Vff File Reader (loadable, bundled in Slicer RT extension)
Queen's Universit
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
Queen's University
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Create Models (loadable, bundled in Slicer IGT extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Resection Volume (scripted, bundled in Resection Planner extension)
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
Queen's University) Jaime Garcia-Guevara (Queen's University
- Breach Warning Self Test
Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
RMP, PMH
- Dicom Sro Import Plugin
SAIC-Frederick, NCI-Frederick
- Volume Rendering (loadable, built-in)
SBU
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
SCI Institute
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
Shiga University of Medical Science in Japan
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Shiga University of Medical Science, Japan, SPL
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
SINAPSE
- Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
SNR
- Path Explorer (loadable, bundled in Slicer IGT extension)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
SPL
- DICOM2Full Brain Tractography (scripted, built-in)
- Label To DICOMSEGConverter Self Test
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Reporting Self Test
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
SPL B&W Harvard
SPL, BWH
- ACPCTransform (cli, built-in)
- Annotations (loadable, built-in)
- BSpline To Deformation Field (cli, built-in)
- Cast Scalar Volume (cli, built-in)
- Colors (loadable, built-in)
- Data (loadable, built-in)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- DTIexport (cli, built-in)
- DTIimport (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- Fiducial Registration (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Image Label Combine (cli, built-in)
- Mask Scalar Volume (cli, built-in)
- Merge Models (cli, built-in)
- Model Maker (cli, built-in)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Probe Volume With Model (cli, built-in)
- Reporting (loadable, bundled in Reporting extension)
- Robust Statistics Segmenter (cli, built-in)
- Scene Views (loadable, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Test Grid Transform Registration (cli, built-in)
- Threshold Scalar Volume (cli, built-in)
- Tractography Label Map Seeding (cli, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
- Welcome (loadable, built-in)
SPL, BWH, UPenn
- Merge Models (cli, built-in)
SUMS
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Surgical Planning Lab
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
UAB
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
UHN, Toronto
- Contour Comparison (loadable, bundled in Slicer RT extension)
- Contour Morphology (loadable, bundled in Slicer RT extension)
- Contours (loadable, bundled in Slicer RT extension)
- Dicom Rt Import (loadable, bundled in Slicer RT extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
Uiowa
- DWIConvert (cli, built-in)
UIowa
- DWIConvert (cli, built-in)
UNC
- DWIRician LMMSEFilter (cli, built-in)
- Extract Skeleton (cli, built-in)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- Port Placement (scripted, bundled in Port Placement extension)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
Univ of Michigan
- Surface Registration (scripted, bundled in CMFreg extension)
Univ. of Iowa
- DICOMPETSUVPlugin
- DICOMRWVMPlugin
University 'Magna Graecia' of Catanzaro
- Plastimatch Py (loadable, bundled in Slicer RT extension)
University College Cork
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
University of Heidelberg
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
University of Iowa
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
University of Iowa) and Andrey Fedorov (SPL
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
UPenn
- Annotations (loadable, built-in)
- EMSegment (loadable, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Scene Views (loadable, built-in)
Utah
- Label Map Smoothing (cli, built-in)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
UVa
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
UWA
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
WashU-St. Louis, dmarcus@wustl.edu
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
while at GE
- Pk Modeling (cli, bundled in Pk Modeling extension)
Modules by contributing individual
185 contributing individuals:
- /
- a
- Akila Viswanathan
- Alan Morris (Utah)
- Alex Yarmakovich (Isomics)
- Alex Yarmarkovich (Kitware))
- Ali Ghayoor
- Alireza Mehrtash (SPL and BWH)
- Allen Tannenbaum (Stony Brook University)
- Amelie Meyer (PerkLab, Queen's University)
- Analysis Laboratory
- Andinet Enquobahrie (Kitware)
- Andras Lasso (PerkLab, Queen's University)
- Andreas Freudling (SPL, BWH)
- Andrey Fedorov (SPL B&W Harvard)
- Andriy Kot (CRTC)
- Anonymous
- Antonio Damato
- Antonio Tristan Vega (UVa)
- Anuja Sharma
- Arie Nakhmani (UAB)
- Atsushi Yamada (SNR)
- Beatriz Paniagua from Department of Orthodontics (UNC)
- Benjamin Long (Kitware)
- Benjamin Yvernault
- Bill Lorensen (Noware)
- Brad Davis
- Bradley Lowekamp (MSC/NLM)
- Brian Zenger (CARMA)
- BWH
- c
- Carl-Fredrik Westin
- Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez (Kitware))
- Casey B Goodlett (Kitware)
- Charles Marion (Kitware)
- Christian Baumgartner
- Csaba Pinter (PerkLab, Queen's University)
- Dan Marcus (Washington University in St. Louis)
- Daniel Blezek (GE)
- Daniel Haehn (UPenn)
- Danny Perry (Utah)
- Demian Wassermann (Brigham and Women's Hospital)
- Dinggang Shen (UNC)
- Dirk Padfield (GE)
- Dominik Meier (SPL, BWH)
- e
- er (Kingston General Hospital)
- Ethan Ulrich (Univ. of Iowa)
- Eugene Kholmovski (CARMA)
- ez (UVa)
- Fotis Drakopoulos (CRTC)
- Francois Budin (NIRAL, UNC)
- Franklin King (PerkLab, Queen's University)
- Greg Gardner (Utah)
- Greg Harris
- Greg Sharp (MGH, Boston)
- Gregory Sharp (MGH)
- Guido Gerig (UNC)
- Guillaume Pernelle
- Hans J. Johnson
- Hans Johnson (SINAPSE)
- hans-johnson -at- uiowa.edu
- http://www.psychiatry.uiowa.edu
- i
- Ipek Oguz
- Ivan Kolesov (Stony Brook University)
- Jan Egger
- Jayender Jagadeesan (BWH)
- Jean-Baptiste Berger (Kitware)
- Jean-Christophe Fillion-Robin (Kitware)
- Jennifer Andrea (PerkLab, Queen's University)
- Jessica Forbes (SINAPSE)
- Jim Miller (GE)
- Johan Andruejol (Kitware)
- John Evans (MGH)
- Jonathan Bronson (SCI Institute)
- Josh Cates (Utah)
- Joy Matsui (UIowa)
- Julien Finet (Kitware)
- Julien Jomier (Kitware)
- Junichi Tokuda (BWH)
- K
- Kent Williams (UIowa)
- Kent WIlliams
- Kevin Alex (Kingston General Hospital)
- Kevin Wang (Princess Margaret Cancer Centre)
- Kilian Pohl (UPenn)
- Koichiro Murakami (SUMS)
- Kyle Sunderl (Queen's University)
- l
- Lauren Barber
- Lauren O'Donnell (SPL, BWH)
- Laurent Chauvin (BWH)
- Liang-Jia Zhu (UAB)
- Liangjia Zhu (Stony Brook University)
- Luca Antiga (Orobix)
- Luis G. Torres (UNC)
- Luping Fang (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
- m
- Marc Niethammer (UNC)
- Marcel Prastawa prastawa@sci.utah.edu
- Mark Scully (Uiowa)
- Markus Van Tol (University of Iowa) and Andrey Fedorov (SPL)
- Martin Styner (UNC)
- Mason Winsauer
- Matt Lougheed (PerkLab, Queen's University)
- Mattea Welch (PerkLab, Queen's University)
- Matthew Holden (Queen's University)
- Matthew S. Holden (Queen's University)
- Matthew Woehlke (Kitware)
- Michael Jeulin-Lagarrigue (Kitware)
- Minjeong Kim (UNC)
- Nabgha Fahrat
- Neuro Image Resarch
- Nicholas Herlambang (AZE R&D)
- Nick Tustison (UPenn)
- Nicole Aucoin (BWH)
- Nigel Goh (UWA)
- Nikos Chrisochoides (CRTC)
- Olivier Clatz (Asclepios INRIA) and Nikos Chrisochoides (CRTC)
- p
- Paolo Zaffino (University 'Magna Graecia' of Catanzaro)
- Pat Marion (Kitware)
- Paul Mercea (University of Heidelberg)
- Pengdong Xiao (Department of Orthodontics, UNC)
- Peter Black (BWH)
- Peter Karasev (Georgia Tech)
- Peter Savadjiev (Kitware))
- Pierre Seroul (UNC)
- Pietro Nardelli (University College Cork)
- Please direct questions or suggestions to http://groups.google.com/group/plastimatch
- Polina Goll
- Qing Pan (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
- R
- r
- Raul San Jose (SPL, BWH)
- Rob Mac Leod (Utah)
- Ron Kikinis (BWH)
- Ross Whitaker (Utah)
- Ruifeng Chen (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
- S
- Salma Bengali (CARMA)
- Sam Song
- Santiago Aja Fern (UVa)
- Sebastien Barré (Kitware)
- Sebastien Barre
- Shigeyuki Naka (SUMS)
- Soichiro Tani (BWH, SUMS)
- Sonia Pujol (SPL, BWH)
- Stefan Lienhard
- Stephen Aylward (Kitware)
- Stephen R Aylward (Kitware)
- Steve Pieper (SPL)
- Sunil Kumar (Moka Creative, LLC, kumar.sunil.p@gmail.com)
- Sylvain Bouix (BWH)
- Sylvain Gouttard
- t
- Tamas Ungi (PerkLab, Queen's University)
- the University of North Carolina at Chapel Hill (UNC)
- Tina Kapur
- Tobias Penzkofer
- Tohru Tani (SUMS)
- UNC Medical School
- Uof M School Of Dentistry
- Uof M School of Dentistry
- Vince Magnotta (UIowa)
- Vincent A. Magnotta
- Vincent Magnotta
- Vinicius Boen (Univ of Michigan)
- Vivek Narayan (BWH)
- Wendy Plesniak (SPL, BWH)
- Xiaodong Tao (GE)
- Xiaofeng Liu (GE GLobal Research)
- Xiaojun Chen
- y Wells
- Yanling Liu (SAIC-Frederick, NCI-Frederick)
- Yi Gao (BWH/UAB)
- Yinglin Lee (SPL, BWH)
- Yingxuan Zhu (GE)
- Yinpeng Li
- Yixun Liu (CRTC)
- Yogesh Rathi (yogesh@bwh.harvard.edu)
- Yong Zhang (IBM)
- Yumin Yuan
- Yundi Shi
/
- Dicom Rt Import Plugin
a
- Dicom Rt Import Plugin
Akila Viswanathan
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Alan Morris
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Alex Yarmakovich
- Models (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
Alex Yarmarkovich
- Data (loadable, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Image Label Combine (cli, built-in)
- Transforms (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
Ali Ghayoor
- BRAINSTransform Convert (cli, built-in)
- Perform Metric Test (cli, built-in)
Alireza Mehrtash
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
Allen Tannenbaum
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Robust Statistics Segmenter (cli, built-in)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Amelie Meyer
- Plus Remote (scripted, bundled in Slicer IGT extension)
Analysis Laboratory
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
Andinet Enquobahrie
- Port Placement (scripted, bundled in Port Placement extension)
Andras Lasso
- Contour Comparison (loadable, bundled in Slicer RT extension)
- Contour Morphology (loadable, bundled in Slicer RT extension)
- Contours (loadable, bundled in Slicer RT extension)
- Dicom Rt Export (loadable, bundled in Slicer RT extension)
- Dicom Rt Import (loadable, bundled in Slicer RT extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
- Isodose (loadable, bundled in Slicer RT extension)
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
- Transforms (loadable, built-in)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
Andreas Freudling
- Volume Rendering (loadable, built-in)
Andrey Fedorov
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- BSpline To Deformation Field (cli, built-in)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Change Tracker Self Test
- Crop Volume (loadable, built-in)
- DICOMRWVMPlugin
- DICOMSegmentation Plugin
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
- Label To DICOMSEGConverter Self Test
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Multi Volume Importer Plugin
- N4ITKBias Field Correction (cli, built-in)
- PBNRR (cli, bundled in PBNRR extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Reporting (loadable, bundled in Reporting extension)
- Reporting Self Test
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
Andriy Kot
Anonymous
- CLIROITest (cli, built-in)
- EMSegment Transform To New Format (cli, built-in)
Antonio Damato
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Antonio Tristan Vega
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
Anuja Sharma
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
Arie Nakhmani
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Atsushi Yamada
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Path Explorer (loadable, bundled in Slicer IGT extension)
Beatriz Paniagua from Department of Orthodontics
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Benjamin Long
- Sample Data (scripted, built-in)
Benjamin Yvernault
- DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
Bill Lorensen
- Add Scalar Volumes (cli, built-in)
- Checker Board Filter (cli, built-in)
- Create DICOMSeries (cli, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Diffusion Tensor Test (cli, built-in)
- Execution Model Tour (cli, built-in)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Histogram Matching (cli, built-in)
- Median Image Filter (cli, built-in)
- Model Maker (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- Orient Scalar Volume (cli, built-in)
- Otsu Threshold Image Filter (cli, built-in)
- Resample Scalar Volume (cli, built-in)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Subtract Scalar Volumes (cli, built-in)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- Voting Binary Hole Filling Image Filter (cli, built-in)
Brad Davis
- EMSegment Command Line (cli, built-in)
Bradley Lowekamp
- Bin Shrink (cli, bundled in IASEM extension)
- Double Threshold Effect (scripted, bundled in IASEM extension)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Simple Filters (scripted, built-in)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
Brian Zenger
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
BWH
- DICOMSegmentation Plugin
- Multi Volume Importer Plugin
c
- Dicom Rt Import Plugin
Carl-Fredrik Westin
- UKFTractography (cli, bundled in UKFTractography extension)
Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
Casey B Goodlett
- Expert Automated Registration (cli, built-in)
- Fiducial Registration (cli, built-in)
Charles Marion
- Data Store (loadable, built-in)
Christian Baumgartner
- Convert VTK (cli, bundled in UKFTractography extension)
- UKFTractography (cli, bundled in UKFTractography extension)
Csaba Pinter
- Beams (loadable, bundled in Slicer RT extension)
- Contour Comparison (loadable, bundled in Slicer RT extension)
- Contour Morphology (loadable, bundled in Slicer RT extension)
- Contours (loadable, bundled in Slicer RT extension)
- Data (loadable, built-in)
- Dicom Rt Export (loadable, bundled in Slicer RT extension)
- Dicom Rt Import (loadable, bundled in Slicer RT extension)
- Dicom Rt Import Self Test
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Isodose (loadable, bundled in Slicer RT extension)
- NAMIC Tutorial 2013June Self Test
- Planar Image (loadable, bundled in Slicer RT extension)
- Subject Hierarchy (loadable, built-in)
- Subject Hierarchy Core Plugins Self Test
- Subject Hierarchy Generic Self Test
- Vff File Reader (loadable, bundled in Slicer RT extension)
Dan Marcus
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Daniel Blezek
- Execution Model Tour (cli, built-in)
Daniel Haehn
- Annotations (loadable, built-in)
- Centerline Computation (scripted, bundled in VMTK extension)
- EMSegment (loadable, built-in)
- EMSegment Command Line (cli, built-in)
- Level Set Segmentation (scripted, bundled in VMTK extension)
- Merge Models (cli, built-in)
- Scene Views (loadable, built-in)
- Vesselness Filtering (scripted, bundled in VMTK extension)
Danny Perry
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Demian Wassermann
- DICOM2Full Brain Tractography (scripted, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Fiber Bundle Label Select (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- test tractography display
- Tractography Label Map Seeding (cli, built-in)
Dinggang Shen
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
Dirk Padfield
- Label Map Smoothing (cli, built-in)
Dominik Meier
- Fiducial Registration (cli, built-in)
e
- Dicom Rt Import Plugin
er
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
Ethan Ulrich
- DICOMPETSUVPlugin
- DICOMRWVMPlugin
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Eugene Kholmovski
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
ez
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
Fotis Drakopoulos
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- PBNRR (cli, bundled in PBNRR extension)
Francois Budin
- DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
Franklin King
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Transforms (loadable, built-in)
Greg Gardner
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Greg Harris
- BRAINSDemon Warp (cli, built-in)
- BRAINSResample (cli, built-in)
- VBRAINSDemon Warp (cli, built-in)
Greg Sharp
- Dicom Rt Export (loadable, bundled in Slicer RT extension)
Gregory Sharp
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Plm Register (scripted, bundled in Slicer RT extension)
Guido Gerig
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Extract Skeleton (cli, built-in)
Guillaume Pernelle
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Hans J. Johnson
- BRAINSDemon Warp (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- VBRAINSDemon Warp (cli, built-in)
Hans Johnson
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
- DWIConvert (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- UKFTractography (cli, bundled in UKFTractography extension)
hans-johnson -at- uiowa.edu
- BRAINSFit (cli, built-in)
- BRAINSROIAuto (cli, built-in)
http://www.psychiatry.uiowa.edu
- BRAINSFit (cli, built-in)
- BRAINSROIAuto (cli, built-in)
i
- Dicom Rt Import Plugin
Ipek Oguz
- Convert VTK (cli, bundled in UKFTractography extension)
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
- UKFTractography (cli, bundled in UKFTractography extension)
Ivan Kolesov
- Carrera Slice (loadable, bundled in Carrera Slice extension)
Jan Egger
Jayender Jagadeesan
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- Segment CAD (scripted, bundled in Open CAD extension)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Jean-Baptiste Berger
- Data Store (loadable, built-in)
- DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
Jean-Christophe Fillion-Robin
- CLI4Test
- Data Store (loadable, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- fiber visibility crash2438
- label Toggle Bug2049
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Sample Data (scripted, built-in)
- Simple Filters (scripted, built-in)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Transforms (loadable, built-in)
- View Controllers (loadable, built-in)
- Welcome (loadable, built-in)
Jennifer Andrea
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
- Vff File Reader (loadable, bundled in Slicer RT extension)
Jessica Forbes
- Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
Jim Miller
- Charting (scripted, built-in)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Simple Region Growing Segmentation (cli, built-in)
- Slice Link Logic (scripted, built-in)
- Slicer4Minute (scripted, built-in)
- View Controllers (loadable, built-in)
- View Controllers Slice Interpolation Bug1926
Johan Andruejol
- Units (loadable, built-in)
John Evans
- Pk Modeling (cli, bundled in Pk Modeling extension)
Jonathan Bronson
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
Josh Cates
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- Label Map Smoothing (cli, built-in)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Joy Matsui
- DWIConvert (cli, built-in)
Julien Finet
- Cameras (loadable, built-in)
- Colors (loadable, built-in)
- Data (loadable, built-in)
- Double Arrays (loadable, built-in)
- Event Broker
- Image Maker (cli, bundled in Image Maker extension)
- Models (loadable, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Scene Performance (scripted, built-in)
- Threshold Scalar Volume (cli, built-in)
- Tractography Display (loadable, built-in)
- Transforms (loadable, built-in)
- Units (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
Julien Jomier
- Gaussian Blur Image Filter (cli, built-in)
Junichi Tokuda
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Dilate Label (cli, bundled in Erode Dilate Label extension)
- Erode Label (cli, bundled in Erode Dilate Label extension)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
K
- Dicom Rt Import Plugin
Kent Williams
- BRAINSDWICleanup (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- Convert VTK (cli, bundled in UKFTractography extension)
- DWIConvert (cli, built-in)
- UKFTractography (cli, bundled in UKFTractography extension)
Kent WIlliams
- BRAINSStrip Rotation (cli, built-in)
Kevin Alex
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
Kevin Wang
- Colors Scalar Bar Self Test
- Contour Comparison (loadable, bundled in Slicer RT extension)
- Contour Morphology (loadable, bundled in Slicer RT extension)
- Contours (loadable, bundled in Slicer RT extension)
- Dicom Rt Export (loadable, bundled in Slicer RT extension)
- Dicom Rt Import (loadable, bundled in Slicer RT extension)
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
- Dicom Sro Import Plugin
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
- Isodose (loadable, bundled in Slicer RT extension)
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
Kilian Pohl
- Annotations (loadable, built-in)
- Change Tracker (scripted, bundled in Change Tracker extension)
- EMSegment (loadable, built-in)
- EMSegment Command Line (cli, built-in)
- Scene Views (loadable, built-in)
Koichiro Murakami
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
Kyle Sunderl
- Dvh Comparison (scripted, bundled in Slicer RT extension)
l
- Dicom Rt Import Plugin
Lauren Barber
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Lauren O'Donnell
- Fiber Bundle Label Select (cli, built-in)
- Probe Volume With Model (cli, built-in)
Laurent Chauvin
- Curve Maker (scripted, bundled in Curve Maker extension)
- Dice Computation (loadable, bundled in Dice Computation extension)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Liang-Jia Zhu
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Liangjia Zhu
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Luca Antiga
- Centerline Computation (scripted, bundled in VMTK extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
- Surface Toolbox (scripted, built-in)
- Vesselness Filtering (scripted, bundled in VMTK extension)
Luis G. Torres
- Port Placement (scripted, bundled in Port Placement extension)
Luping Fang
- Gyro Guide (scripted, bundled in Gyro Guide extension)
m
- Dicom Rt Import Plugin
Marc Niethammer
- DWIRician LMMSEFilter (cli, built-in)
Marcel Prastawa prastawa@sci.utah.edu
Mark Scully
- DWIConvert (cli, built-in)
Markus Van Tol
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Martin Styner
- Convert VTK (cli, bundled in UKFTractography extension)
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Extract Skeleton (cli, built-in)
- UKFTractography (cli, bundled in UKFTractography extension)
Mason Winsauer
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
Matt Lougheed
- Resection Volume (scripted, bundled in Resection Planner extension)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
Mattea Welch
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
Matthew Holden
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
Matthew S. Holden
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
Matthew Woehlke
- Extension Wizard (scripted, built-in)
Michael Jeulin-Lagarrigue
- Reformat (loadable, built-in)
Minjeong Kim
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
Nabgha Fahrat
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Neuro Image Resarch
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
Nicholas Herlambang
- JRC2013Vis
Nick Tustison
- N4ITKBias Field Correction (cli, built-in)
Nicole Aucoin
- ACPCTransform (cli, built-in)
- Add Many Markups Fiducial Test
- Annotations (loadable, built-in)
- Cast Scalar Volume (cli, built-in)
- Colors (loadable, built-in)
- Colors Scalar Bar Self Test
- Data (loadable, built-in)
- Fiducial Layout Switch Bug1914
- Grayscale Model Maker (cli, built-in)
- Markups (loadable, built-in)
- Markups In Compare Viewers Self Test
- Markups In Views Self Test
- Mask Scalar Volume (cli, built-in)
- Merge Models (cli, built-in)
- Model Maker (cli, built-in)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Neurosurgical Planning Tutorial Markups Self Test
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Reporting (loadable, bundled in Reporting extension)
- Scene Views (loadable, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Threshold Scalar Volume (cli, built-in)
- Volume Rendering Scene Close (scripted, built-in)
- Volumes (loadable, built-in)
Nigel Goh
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
Nikos Chrisochoides
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- PBNRR (cli, bundled in PBNRR extension)
Olivier Clatz
p
- Dicom Rt Import Plugin
Paolo Zaffino
- Plastimatch Py (loadable, bundled in Slicer RT extension)
Pat Marion
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Paul Mercea
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
Pengdong Xiao
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Peter Black
- Change Tracker (scripted, bundled in Change Tracker extension)
Peter Karasev
- Carrera Slice (loadable, bundled in Carrera Slice extension)
Peter Savadjiev
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- UKFTractography (cli, bundled in UKFTractography extension)
Pierre Seroul
- Extract Skeleton (cli, built-in)
Pietro Nardelli
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
Please direct questions or suggestions to http://groups.google.com/group/plastimatch
- plastimatch slicer bspline (cli, bundled in Slicer RT extension)
- plastimatch slicer dicomrt export (cli, bundled in Slicer RT extension)
- plastimatch slicer dicomrt import (cli, bundled in Slicer RT extension)
- plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
- plastimatch slicer xformwarp (cli, bundled in Slicer RT extension)
Polina Goll
- EMSegment Command Line (cli, built-in)
Qing Pan
- Gyro Guide (scripted, bundled in Gyro Guide extension)
R
- Dicom Rt Import Plugin
r
- Dicom Rt Import Plugin
Raul San Jose
- Diffusion Tensor Scalar Measurements (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- Tractography Label Map Seeding (cli, built-in)
Rob MacLeod
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Ron Kikinis
- ACPCTransform (cli, built-in)
- Cast Scalar Volume (cli, built-in)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Crop Volume (loadable, built-in)
- Mask Scalar Volume (cli, built-in)
- Merge Models (cli, built-in)
- Model Maker (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Robust Statistics Segmenter (cli, built-in)
- Surface Toolbox (scripted, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Threshold Scalar Volume (cli, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
Ross Whitaker
- Label Map Smoothing (cli, built-in)
Ruifeng Chen
- Gyro Guide (scripted, bundled in Gyro Guide extension)
S
- Dicom Rt Import Plugin
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Salma Bengali
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
Sam Song
Santiago Aja Fern
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
Sebastien Barré
- Cameras (loadable, built-in)
Sebastien Barre
- EMSegment Command Line (cli, built-in)
Shigeyuki Naka
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Soichiro Tani
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Sonia Pujol
- Dice Computation (loadable, bundled in Dice Computation extension)
- DTIexport (cli, built-in)
- DTIimport (cli, built-in)
Stefan Lienhard
- Convert VTK (cli, bundled in UKFTractography extension)
- UKFTractography (cli, bundled in UKFTractography extension)
Stephen Aylward
- Extract Skeleton (cli, built-in)
- Gaussian Blur Image Filter (cli, built-in)
Stephen R Aylward
- Expert Automated Registration (cli, built-in)
Steve Pieper
- Atlas Tests
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Centerline Computation (scripted, bundled in VMTK extension)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Data Probe (scripted, built-in)
- DICOM (scripted, built-in)
- DICOMDiffusion Volume Plugin
- DICOMLongitudinal PETCTPlugin
- DICOMScalar Volume Plugin
- DICOMSlicer Data Bundle Plugin
- Endoscopy (scripted, built-in)
- fiber visibility crash2438
- Fiber Bundle To Label Map (scripted, built-in)
- label Toggle Bug2049
- Landmark Registration (scripted, bundled in CMFreg extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Performance Tests
- Reporting (loadable, bundled in Reporting extension)
- RSNA2012Prostate Demo
- RSNAQuant Tutorial
- RSNAVis Tutorial
- Sample Data (scripted, built-in)
- scene Import2428
- Self Tests
- Simple Filters (scripted, built-in)
- slicer Close Crash Bug2590
- Slicer MRBTest
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Threshold Threading Test
- Vector To Scalar Volume (scripted, built-in)
- Vesselness Filtering (scripted, bundled in VMTK extension)
- View Controllers (loadable, built-in)
- Volumes (loadable, built-in)
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Sunil Kumar
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Sylvain Bouix
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Sylvain Gouttard
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
t
- Dicom Rt Import Plugin
Tamas Ungi
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Breach Warning Self Test
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Create Models (loadable, bundled in Slicer IGT extension)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
the University of North Carolina at Chapel Hill
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Tina Kapur
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Tobias Penzkofer
Tohru Tani
- Corner Annotation (scripted, bundled in Corner Annotation extension)
UNC Medical School
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
UofM School Of Dentistry
UofM School of Dentistry
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
Vince Magnotta
- DWIConvert (cli, built-in)
Vincent A. Magnotta
- BRAINSLabel Stats (cli, built-in)
Vincent Magnotta
- BRAINSResample (cli, built-in)
Vinicius Boen
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
- Surface Registration (scripted, bundled in CMFreg extension)
Vivek Narayan
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- Segment CAD (scripted, bundled in Open CAD extension)
Wendy Plesniak
- Annotations (loadable, built-in)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Scene Views (loadable, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- View Controllers (loadable, built-in)
- Welcome (loadable, built-in)
Xiaodong Tao
- DWIConvert (cli, built-in)
- Model To Label Map (cli, built-in)
Xiaofeng Liu
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
Xiaojun Chen
y Wells
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Yanling Liu
- Volume Rendering (loadable, built-in)
Yi Gao
- i Gyne (scripted, bundled in i Gyne extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Robust Statistics Segmenter (cli, built-in)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Yinglin Lee
- Test Grid Transform Registration (cli, built-in)
Yingxuan Zhu
- Pk Modeling (cli, bundled in Pk Modeling extension)
Yinpeng Li
- Convert VTK (cli, bundled in UKFTractography extension)
- UKFTractography (cli, bundled in UKFTractography extension)
Yixun Liu
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- PBNRR (cli, bundled in PBNRR extension)
Yogesh Rathi
- Convert VTK (cli, bundled in UKFTractography extension)
- UKFTractography (cli, bundled in UKFTractography extension)
Yong Zhang
- Annotations (loadable, built-in)
Yumin Yuan
- EMSegment Command Line (cli, built-in)
Yundi Shi
- Convert VTK (cli, bundled in UKFTractography extension)
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
- UKFTractography (cli, bundled in UKFTractography extension)
Modules by type
3 types:
cli
- ABC (cli, bundled in ABC extension)
- ACPCTransform (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- Apply Matrix (cli, bundled in CMFreg extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- BRAINSDemon Warp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabel Stats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSStrip Rotation (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- BSpline To Deformation Field (cli, built-in)
- Cast Scalar Volume (cli, built-in)
- Checker Board Filter (cli, built-in)
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
- CLIROITest (cli, built-in)
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- Convert VTK (cli, bundled in UKFTractography extension)
- Create DICOMSeries (cli, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Tensor Test (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Dilate Label (cli, bundled in Erode Dilate Label extension)
- Downsize (cli, bundled in CMFreg extension)
- DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
- DTIexport (cli, built-in)
- DTIimport (cli, built-in)
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
- DWIConvert (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
- EMSegment Command Line (cli, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Erode Label (cli, bundled in Erode Dilate Label extension)
- Execution Model Tour (cli, built-in)
- Expert Automated Registration (cli, built-in)
- Extract Skeleton (cli, built-in)
- Fiber Bundle Label Select (cli, built-in)
- Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Fiducial Registration (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Gaussian Blur Image Filter (cli, built-in)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Growing (cli, bundled in CMFreg extension)
- Histogram Matching (cli, built-in)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
- Image Label Combine (cli, built-in)
- Image Maker (cli, bundled in Image Maker extension)
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Map Smoothing (cli, built-in)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Mask Scalar Volume (cli, built-in)
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Median Image Filter (cli, built-in)
- Merge Models (cli, built-in)
- Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
- Model Maker (cli, built-in)
- Model To Label Map (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Non Growing (cli, bundled in CMFreg extension)
- Orient Scalar Volume (cli, built-in)
- Otsu Threshold Image Filter (cli, built-in)
- PBNRR (cli, bundled in PBNRR extension)
- Perform Metric Test (cli, built-in)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- plastimatch slicer bspline (cli, bundled in Slicer RT extension)
- plastimatch slicer dicomrt export (cli, bundled in Slicer RT extension)
- plastimatch slicer dicomrt import (cli, bundled in Slicer RT extension)
- plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
- plastimatch slicer xformwarp (cli, bundled in Slicer RT extension)
- Probe Volume With Model (cli, built-in)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
- Resample Scalar Volume (cli, built-in)
- Robust Statistics Segmenter (cli, built-in)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Simple Region Growing Segmentation (cli, built-in)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Subtract Scalar Volumes (cli, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- Test Grid Transform Registration (cli, built-in)
- Threshold Scalar Volume (cli, built-in)
- Tractography Label Map Seeding (cli, built-in)
- UKFTractography (cli, bundled in UKFTractography extension)
- VBRAINSDemon Warp (cli, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
loadable
- Annotations (loadable, built-in)
- Beams (loadable, bundled in Slicer RT extension)
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Cameras (loadable, built-in)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Colors (loadable, built-in)
- Contour Comparison (loadable, bundled in Slicer RT extension)
- Contour Morphology (loadable, bundled in Slicer RT extension)
- Contours (loadable, bundled in Slicer RT extension)
- Create Models (loadable, bundled in Slicer IGT extension)
- Crop Volume (loadable, built-in)
- Data (loadable, built-in)
- Data Store (loadable, built-in)
- Dice Computation (loadable, bundled in Dice Computation extension)
- Dicom Rt Export (loadable, bundled in Slicer RT extension)
- Dicom Rt Import (loadable, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
- Double Arrays (loadable, built-in)
- EMSegment (loadable, built-in)
- EMSegment Quick (loadable, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Isodose (loadable, bundled in Slicer RT extension)
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- Markups (loadable, built-in)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Models (loadable, built-in)
- Multi Volume Explorer (loadable, built-in)
- Open IGTLink IF (loadable, built-in)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Planar Image (loadable, bundled in Slicer RT extension)
- Plastimatch Py (loadable, bundled in Slicer RT extension)
- Reformat (loadable, built-in)
- Reporting (loadable, bundled in Reporting extension)
- Scene Views (loadable, built-in)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
- Subject Hierarchy (loadable, built-in)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Tractography Display (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Transforms (loadable, built-in)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Units (loadable, built-in)
- Vff File Reader (loadable, bundled in Slicer RT extension)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
- Volumes (loadable, built-in)
- Welcome (loadable, built-in)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
scripted
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
- Centerline Computation (scripted, bundled in VMTK extension)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Charting (scripted, built-in)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Data Probe (scripted, built-in)
- DICOM (scripted, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Double Threshold Effect (scripted, bundled in IASEM extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- Endoscopy (scripted, built-in)
- Extension Wizard (scripted, built-in)
- Fiber Bundle To Label Map (scripted, built-in)
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- i Gyne (scripted, bundled in i Gyne extension)
- KUtil (scripted, bundled in Carrera Slice extension)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
- Landmark Registration (scripted, bundled in CMFreg extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
- Multi Volume Importer (scripted, built-in)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Plm Register (scripted, bundled in Slicer RT extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- Port Placement (scripted, bundled in Port Placement extension)
- Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Resection Volume (scripted, bundled in Resection Planner extension)
- Sample Data (scripted, built-in)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
- Scene Performance (scripted, built-in)
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Segment CAD (scripted, bundled in Open CAD extension)
- Simple Filters (scripted, built-in)
- Slice Link Logic (scripted, built-in)
- Slicer4Minute (scripted, built-in)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Surface Registration (scripted, bundled in CMFreg extension)
- Surface Toolbox (scripted, built-in)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
- Vector To Scalar Volume (scripted, built-in)
- Vesselness Filtering (scripted, bundled in VMTK extension)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Volume Rendering Scene Close (scripted, built-in)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Modules by extension
55 extensions:
- ABC
- Airway Segmentation
- builtin
- Cardiac MRI Toolkit
- Cardiac Agaston Measures
- Carrera Slice
- CBC 3D I2MConversion
- Change Tracker
- Cleaver Extension
- CMFreg
- Corner Annotation
- Curve Maker
- Dice Computation
- DTIAtlas Fiber Analyzer
- Erode Dilate Label
- Fast Grow Cut Effect
- Finsler Tractography
- Gel Dosimetry Analysis
- Gyro Guide
- IASEM
- i Gyne
- Image Maker
- Intensity Segmenter
- LAScar Segmenter
- Longitudinal PETCT
- MABMIS
- Matlab Bridge
- Mesh To Label Map
- Multidim Data
- Needle Finder
- Open CAD
- PBNRR
- Percutaneous Approach Analysis
- Perk Tutor
- PETDICOMExtension
- Pk Modeling
- Port Placement
- Py Dev Remote Debug
- Reporting
- Resection Planner
- Scoliosis
- Segmentation Aided Registration
- VMTK
- Slicer IGT
- Slicer RT
- Slicer To Kiwi Exporter
- Sobolev Segmenter
- Swiss Skull Stripper
- TCIABrowser
- Thingiverse Browser
- Tracker Stabilizer
- UKFTractography
- Volume Clip
- Window Level Effect
- XNATSlicer
ABC
AirwaySegmentation
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
builtin
- ACPCTransform (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Annotations (loadable, built-in)
- BRAINSDemon Warp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabel Stats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSStrip Rotation (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- BSpline To Deformation Field (cli, built-in)
- Cameras (loadable, built-in)
- Cast Scalar Volume (cli, built-in)
- Charting (scripted, built-in)
- Checker Board Filter (cli, built-in)
- CLIROITest (cli, built-in)
- Colors (loadable, built-in)
- Create DICOMSeries (cli, built-in)
- Crop Volume (loadable, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Data (loadable, built-in)
- Data Probe (scripted, built-in)
- Data Store (loadable, built-in)
- DICOM (scripted, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Tensor Test (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Double Arrays (loadable, built-in)
- DTIexport (cli, built-in)
- DTIimport (cli, built-in)
- DWIConvert (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
- EMSegment (loadable, built-in)
- EMSegment Command Line (cli, built-in)
- EMSegment Quick (loadable, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Endoscopy (scripted, built-in)
- Execution Model Tour (cli, built-in)
- Expert Automated Registration (cli, built-in)
- Extension Wizard (scripted, built-in)
- Extract Skeleton (cli, built-in)
- Fiber Bundle Label Select (cli, built-in)
- Fiber Bundle To Label Map (scripted, built-in)
- Fiducial Registration (cli, built-in)
- Gaussian Blur Image Filter (cli, built-in)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Histogram Matching (cli, built-in)
- Image Label Combine (cli, built-in)
- Label Map Smoothing (cli, built-in)
- Markups (loadable, built-in)
- Mask Scalar Volume (cli, built-in)
- Median Image Filter (cli, built-in)
- Merge Models (cli, built-in)
- Model Maker (cli, built-in)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Open IGTLink IF (loadable, built-in)
- Orient Scalar Volume (cli, built-in)
- Otsu Threshold Image Filter (cli, built-in)
- Perform Metric Test (cli, built-in)
- PETStandard Uptake Value Computation (cli, built-in)
- Probe Volume With Model (cli, built-in)
- Reformat (loadable, built-in)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
- Resample Scalar Volume (cli, built-in)
- Robust Statistics Segmenter (cli, built-in)
- Sample Data (scripted, built-in)
- Scene Performance (scripted, built-in)
- Scene Views (loadable, built-in)
- Simple Filters (scripted, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- Slice Link Logic (scripted, built-in)
- Slicer4Minute (scripted, built-in)
- Subject Hierarchy (loadable, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Surface Toolbox (scripted, built-in)
- Test Grid Transform Registration (cli, built-in)
- Threshold Scalar Volume (cli, built-in)
- Tractography Display (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
- Tractography Label Map Seeding (cli, built-in)
- Transforms (loadable, built-in)
- Units (loadable, built-in)
- VBRAINSDemon Warp (cli, built-in)
- Vector To Scalar Volume (scripted, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volume Rendering Scene Close (scripted, built-in)
- Volumes (loadable, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- Welcome (loadable, built-in)
Cardiac_MRI_Toolkit
- CMRToolkit Automatic Left Atrial Scar (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Axial Dilate (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Boolean REMOVEFilter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Connected Threshold Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Inhomogeneity Correction (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Isolated Connected Filter (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit PVAntrum Cut (cli, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Registration BRAINSFit (scripted, bundled in Cardiac MRI Toolkit extension)
- CMRToolkit Wizard (scripted, bundled in Cardiac MRI Toolkit extension)
- LASegmentation Workflow (scripted, bundled in Cardiac MRI Toolkit extension)
- Scar Visualization (scripted, bundled in Cardiac MRI Toolkit extension)
CardiacAgastonMeasures
- Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
CarreraSlice
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- KUtil (scripted, bundled in Carrera Slice extension)
CBC_3D_I2MConversion
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
ChangeTracker
- Change Tracker (scripted, bundled in Change Tracker extension)
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
CleaverExtension
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
CMFreg
- Apply Matrix (cli, bundled in CMFreg extension)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Landmark Registration (scripted, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
- Surface Registration (scripted, bundled in CMFreg extension)
CornerAnnotation
- Corner Annotation (scripted, bundled in Corner Annotation extension)
CurveMaker
- Curve Maker (scripted, bundled in Curve Maker extension)
DiceComputation
- Dice Computation (loadable, bundled in Dice Computation extension)
DTIAtlasFiberAnalyzer
- DTIAtlas Fiber Analyzer (cli, bundled in DTIAtlas Fiber Analyzer extension)
- dtitractstat (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Fiber Compare (cli, bundled in DTIAtlas Fiber Analyzer extension)
- Merge Stat With Fiber (cli, bundled in DTIAtlas Fiber Analyzer extension)
ErodeDilateLabel
- Dilate Label (cli, bundled in Erode Dilate Label extension)
- Erode Label (cli, bundled in Erode Dilate Label extension)
FastGrowCutEffect
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
FinslerTractography
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
GelDosimetryAnalysis
- Gel Dosimetry Analysis (scripted, bundled in Gel Dosimetry Analysis extension)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
GyroGuide
- Gyro Guide (scripted, bundled in Gyro Guide extension)
IASEM
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Double Threshold Effect (scripted, bundled in IASEM extension)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
iGyne
ImageMaker
- Image Maker (cli, bundled in Image Maker extension)
IntensitySegmenter
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
LAScarSegmenter
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
LongitudinalPETCT
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
MABMIS
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
MatlabBridge
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
MeshToLabelMap
- Mesh To Label Map (cli, bundled in Mesh To Label Map extension)
MultidimData
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
NeedleFinder
- Needle Finder (scripted, bundled in Needle Finder extension)
OpenCAD
- Heterogeneity CAD (scripted, bundled in Open CAD extension)
- Segment CAD (scripted, bundled in Open CAD extension)
PBNRR
PercutaneousApproachAnalysis
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
PerkTutor
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
PETDICOMExtension
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
PkModeling
- Pk Modeling (cli, bundled in Pk Modeling extension)
PortPlacement
- Port Placement (scripted, bundled in Port Placement extension)
PyDevRemoteDebug
- Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
Reporting
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
- Reporting (loadable, bundled in Reporting extension)
ResectionPlanner
- Resection Volume (scripted, bundled in Resection Planner extension)
Scoliosis
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
SegmentationAidedRegistration
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
SlicerExtension-VMTK
- Centerline Computation (scripted, bundled in VMTK extension)
- Level Set Segmentation (scripted, bundled in VMTK extension)
- Vesselness Filtering (scripted, bundled in VMTK extension)
SlicerIGT
- Breach Warning (loadable, bundled in Slicer IGT extension)
- Collect Fiducials (loadable, bundled in Slicer IGT extension)
- Create Models (loadable, bundled in Slicer IGT extension)
- Fiducial Registration Wizard (loadable, bundled in Slicer IGT extension)
- Fiducials To Model Registration (scripted, bundled in Slicer IGT extension)
- Open IGTLink Remote (loadable, bundled in Slicer IGT extension)
- Path Explorer (loadable, bundled in Slicer IGT extension)
- Pivot Calibration (loadable, bundled in Slicer IGT extension)
- Plus Remote (scripted, bundled in Slicer IGT extension)
- Transform Fusion (loadable, bundled in Slicer IGT extension)
- Ultrasound Snapshots (loadable, bundled in Slicer IGT extension)
- Volume Reslice Driver (loadable, bundled in Slicer IGT extension)
SlicerRT
- Beams (loadable, bundled in Slicer RT extension)
- Contour Comparison (loadable, bundled in Slicer RT extension)
- Contour Morphology (loadable, bundled in Slicer RT extension)
- Contours (loadable, bundled in Slicer RT extension)
- Dicom Rt Export (loadable, bundled in Slicer RT extension)
- Dicom Rt Import (loadable, bundled in Slicer RT extension)
- Dicom Sro Export (scripted, bundled in Slicer RT extension)
- Dicom Sro Import (loadable, bundled in Slicer RT extension)
- Dose Accumulation (loadable, bundled in Slicer RT extension)
- Dose Comparison (loadable, bundled in Slicer RT extension)
- Dose Volume Histogram (loadable, bundled in Slicer RT extension)
- Dvh Comparison (scripted, bundled in Slicer RT extension)
- Isodose (loadable, bundled in Slicer RT extension)
- Planar Image (loadable, bundled in Slicer RT extension)
- plastimatch slicer bspline (cli, bundled in Slicer RT extension)
- plastimatch slicer dicomrt export (cli, bundled in Slicer RT extension)
- plastimatch slicer dicomrt import (cli, bundled in Slicer RT extension)
- plastimatch slicer landwarp (cli, bundled in Slicer RT extension)
- plastimatch slicer xformwarp (cli, bundled in Slicer RT extension)
- Plastimatch Py (loadable, bundled in Slicer RT extension)
- Plm Register (scripted, bundled in Slicer RT extension)
- Vff File Reader (loadable, bundled in Slicer RT extension)
SlicerToKiwiExporter
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
SobolevSegmenter
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
SwissSkullStripper
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
TCIABrowser
- TCIABrowser (scripted, bundled in TCIABrowser extension)
ThingiverseBrowser
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
TrackerStabilizer
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
UKFTractography
- Convert VTK (cli, bundled in UKFTractography extension)
- UKFTractography (cli, bundled in UKFTractography extension)
VolumeClip
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
WindowLevelEffect
- Window Level Effect (scripted, bundled in Window Level Effect extension)
XNATSlicer
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Extensions by name
54 extensions:
- ABC
- Airway Segmentation
- Cardiac MRI Toolkit
- Cardiac Agaston Measures
- Carrera Slice
- CBC 3D I2MConversion
- Change Tracker
- Cleaver Extension
- CMFreg
- Corner Annotation
- Curve Maker
- Dice Computation
- DTIAtlas Fiber Analyzer
- Erode Dilate Label
- Fast Grow Cut Effect
- Finsler Tractography
- Gel Dosimetry Analysis
- Gyro Guide
- IASEM
- i Gyne
- Image Maker
- Intensity Segmenter
- LAScar Segmenter
- Longitudinal PETCT
- MABMIS
- Matlab Bridge
- Mesh To Label Map
- Multidim Data
- Needle Finder
- Open CAD
- PBNRR
- Percutaneous Approach Analysis
- Perk Tutor
- PETDICOMExtension
- Pk Modeling
- Port Placement
- Py Dev Remote Debug
- Reporting
- Resection Planner
- Scoliosis
- Segmentation Aided Registration
- VMTK
- Slicer IGT
- Slicer RT
- Slicer To Kiwi Exporter
- Sobolev Segmenter
- Swiss Skull Stripper
- TCIABrowser
- Thingiverse Browser
- Tracker Stabilizer
- UKFTractography
- Volume Clip
- Window Level Effect
- XNATSlicer
Extensions by category
25 categories:
- Cardiac
- Cardiac MRI toolkit
- Converters
- Developer Tools
- Diffusion
- Editor Effects
- Exporter
- Filtering
- IGT
- Informatics
- Mesh Generation
- Microscopy
- Multidimensional data
- Quantification
- Radiotherapy
- Registration
- Remote
- Scoliosis
- Segmentation
- Shape Analysis
- Tractography
- Training
- Utilities
- Vascular Modeling Toolkit
- Wizards
Cardiac
Cardiac MRI toolkit
Converters
Developer Tools
Diffusion
Editor Effects
Exporter
Filtering
Morphology
IGT
- Port Placement
- Gyro Guide
- Corner Annotation
- Percutaneous Approach Analysis
- Needle Finder
- Slicer IGT
- Tracker Stabilizer
- i Gyne
- Resection Planner
Informatics
Mesh Generation
Microscopy
Multidimensional data
Quantification
Radiotherapy
Registration
Remote
Scoliosis
Segmentation
- Airway Segmentation
- Open CAD
- Swiss Skull Stripper
- Carrera Slice
- LAScar Segmenter
- Intensity Segmenter
- MABMIS
- ABC
- Sobolev Segmenter
- Fast Grow Cut Effect
- Volume Clip
Shape Analysis
Tractography
Training
Utilities
Vascular Modeling Toolkit
Wizards
Extensions by contributing organization
54 contributing organizations:
- Asclepios INRIA) and Nikos Chrisochoides (CRTC
- Boston Childrens Hospital
- Brigham and Women's Hospital
- BWH
- BWH & MGH
- BWH, SPL
- BWH/UAB
- CARMA
- College of Information Engineering, Zhejiang University of Technology, Hangzhou, China
- Crisalix
- CRTC
- Department of Neurosurgery, PLA General Hospital, Beijing, China
- Department of Orthodontics, UNC
- GE
- GE GLobal Research
- GT
- Isomics
- Kitware
- Massachusetts General Hospital
- Moka Creative LLC, Washington University in St. Louis
- NIRAL, UNC
- Noware
- Orobix
- Perk Lab at Queen's University
- Perk Lab, Queen's
- Perk Lab, Queen's University
- PMH
- Queen's University
- Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
- SBU
- SCI Institute
- Shiga University of Medical Science, Japan
- Shiga University of Medical Science, Japan, SPL
- SPL
- SPL and BWH
- SPL B&W Harvard
- SRI
- Stony Brook University
- Surgical Planning Lab
- UAB
- UIowa
- UNC
- Univ of Michigan
- University College Cork
- University of Bern
- University of Heidelberg
- University of Iowa
- University of Utah
- Utah
- UWA
- Washington University in St. Louis
- yogesh@bwh.harvard.edu
Asclepios INRIA) and Nikos Chrisochoides (CRTC
Boston Childrens Hospital
Brigham and Women's Hospital
BWH
- Change Tracker
- Curve Maker
- Dice Computation
- Fast Grow Cut Effect
- Open CAD
- Pk Modeling
- Segmentation Aided Registration
- Tracker Stabilizer
BWH & MGH
BWH, SPL
BWH/UAB
CARMA
College of Information Engineering, Zhejiang University of Technology, Hangzhou, China
Crisalix
CRTC
Department of Neurosurgery, PLA General Hospital, Beijing, China
Department of Orthodontics, UNC
GE
GE GLobal Research
GT
Isomics
Kitware
Massachusetts General Hospital
Moka Creative LLC, Washington University in St. Louis
NIRAL, UNC
Noware
Orobix
PerkLab at Queen's University
PerkLab, Queen's
PerkLab, Queen's University
PMH
Queen's University
Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
SBU
SCI Institute
Shiga University of Medical Science, Japan
Shiga University of Medical Science, Japan, SPL
SPL
SPL and BWH
SPL B&W Harvard
SRI
Stony Brook University
Surgical Planning Lab
UAB
- Carrera Slice
- Fast Grow Cut Effect
- LAScar Segmenter
- Segmentation Aided Registration
- Sobolev Segmenter
UIowa
UNC
Univ of Michigan
University College Cork
University of Bern
University of Heidelberg
University of Iowa
University of Utah
Utah
UWA
Washington University in St. Louis
yogesh@bwh.harvard.edu
Extensions by contributing individual
125 contributing individuals:
- Akila Viswanathan
- Alan Morris (Utah)
- Alex Yarmarkovich (Kitware))
- Alireza Mehrtash (SPL and BWH)
- Allen Tannenbaum (Stony Brook University)
- Andinet Enquobahrie (Kitware)
- Andras Lasso (PerkLab, Queen's University)
- Andre Mastmeyer
- Andrey Fedorov (SPL B&W Harvard)
- Andriy Fedorov (BWH)
- Andriy Kot (CRTC)
- Antonio Damato
- Antonio Tristan-Vega (Isomics)
- Arie Nakhmani (UAB)
- Arnaud Gelas (Crisalix)
- Atsushi Yamada (SNR)
- Beatriz Paniagua (UNC)
- Bill Lorensen (Noware)
- Bradley Lowekamp (MSC/NLM)
- Brig Bagley (SCI Institute)
- Carl-Fredrik Westin
- Christian Baumgartner
- Csaba Pinter (PerkLab, Queen's University)
- Dan Marcus (Washington University in St. Louis)
- Daniel Haehn (UPenn)
- Danny Perry (Utah)
- Demian Wasssermann
- Dinggang Shen (UNC)
- Ethan Ulrich (Univ. of Iowa)
- Eugene Kholmovski (CARMA)
- Fotis Drakopoulos (CRTC)
- Francois Budin (NIRAL, UNC)
- Franklin King (PerkLab, Queen's University)
- Greg Gardner (Utah)
- Greg Sharp (MGH, Boston)
- Guillaume Pernelle
- Hans Johnson (SINAPSE)
- Ipek Oguz
- Ivan Kolesov (Stony Brook University)
- Jan Egger
- Jayender Jagadeesan (BWH)
- Jean-Christophe Fillion-Robin (Kitware)
- Jennifer Andrea (PerkLab, Queen's University)
- Jessica Forbes (SINAPSE)
- Jiashu Zhang (Department of Neurosurgery, PLA General Hospital, Beijing, China)
- Jim Miller (GE)
- Jonathan Bronson (SCI Institute)
- Josh Cates (Utah)
- Julien Finet (Kitware)
- Junichi Tokuda (BWH)
- Karl Fritscher (BWH & MGH)
- Kent Williams (UIowa)
- Kevin Wang (Princess Margaret Cancer Centre)
- Kilian Pohl (UPenn)
- Koichiro Murakami (SUMS)
- Lauren Barber
- Laurent Chauvin (BWH)
- Liang-Jia Zhu (UAB)
- Liangjia Zhu (Stony Brook University)
- Luca Antiga (Orobix)
- Luis G. Torres (UNC)
- Luping Fang (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
- Mahnaz Maddah (SRI)
- Manson Winsauer (UNC)
- Marcel Prastawa (University of Utah)
- Martin Styner (UNC)
- Matt Lougheed (PerkLab, Queen's University)
- Mattea Welch (PerkLab, Queen's University)
- Matthew Holden (Queen's University)
- Matthew S. Holden (Queen's University)
- Mauricio Reyes (University of Bern)
- Ming-ching Chang (GE)
- Minjeong Kim (UNC)
- Nabgha Fahrat
- Nicole Aucoin (BWH)
- Nigel Goh (UWA)
- Nikos Chrisochoides (CRTC)
- Olivier Clatz (Asclepios INRIA) and Nikos Chrisochoides (CRTC)
- Pat Marion (Kitware)
- Patricio Vela (GT)
- Paul Mercea (University of Heidelberg)
- Pengdong Xiao (Department of Orthodontics, UNC)
- Peter Black (BWH)
- Peter Karasev (Georgia Tech)
- Peter Savadjiev (Kitware))
- Pietro Nardelli (University College Cork)
- Qing Pan (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
- Rick Herrick (Washington University in St. Louis)
- Rob Mac Leod (Utah)
- Ron Kikinis (BWH)
- Ruifeng Chen (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
- Ryan Eckbo
- S
- Salma Bengali (CARMA)
- Sam Song
- Stefan Bauer (University of Bern)
- Stefan Lienhard
- Steve Pieper (SPL)
- Sunil Kumar (Moka Creative, LLC, kumar.sunil.p@gmail.com)
- Sylvain Bouix (BWH)
- Tamas Ungi (PerkLab, Queen's University)
- Thomas Fejes (University of Bern)
- Tina Kapur
- Tobias Penzkofer
- Vinicius Boen (Univ of Michigan)
- Vivek Narayan (BWH)
- Xiaofeng Liu (GE GLobal Research)
- Xiaojun Chen
- Xiaolei Chen (Department of Neurosurgery, PLA General Hospital, Beijing, China)
- y Wells
- Yi Gao (BWH/UAB)
- Yingxuan Zhu (GE)
- Yinpeng Li
- Yixun Liu (CRTC)
- Yogesh Rathi (yogesh@bwh.harvard.edu)
- Yundi Shi
Akila Viswanathan
Alan Morris
Alex Yarmarkovich
Alireza Mehrtash
Allen Tannenbaum
- Carrera Slice
- Fast Grow Cut Effect
- LAScar Segmenter
- Segmentation Aided Registration
- Sobolev Segmenter
Andinet Enquobahrie
Andras Lasso
Andre Mastmeyer
Andrey Fedorov
- CBC 3D I2MConversion
- Change Tracker
- Longitudinal PETCT
- PBNRR
- PETDICOMExtension
- Reporting
- TCIABrowser
- Window Level Effect
Andriy Fedorov
Andriy Kot
Antonio Damato
Antonio Tristan-Vega
Arie Nakhmani
Arnaud Gelas
Atsushi Yamada
Beatriz Paniagua
Bill Lorensen
Bradley Lowekamp
Brig Bagley
Carl-Fredrik Westin
Christian Baumgartner
Csaba Pinter
Dan Marcus
Daniel Haehn
Danny Perry
Demian Wasssermann
Dinggang Shen
Ethan Ulrich
Eugene Kholmovski
Fotis Drakopoulos
Francois Budin
Franklin King
Greg Gardner
Greg Sharp
Guillaume Pernelle
Hans Johnson
Ipek Oguz
Ivan Kolesov
Jan Egger
Jayender Jagadeesan
Jean-Christophe Fillion-Robin
Jennifer Andrea
Jessica Forbes
Jiashu Zhang
Jim Miller
Jonathan Bronson
Josh Cates
Julien Finet
Junichi Tokuda
Karl Fritscher
Kent Williams
Kevin Wang
Kilian Pohl
Koichiro Murakami
Lauren Barber
Laurent Chauvin
Liang-Jia Zhu
Liangjia Zhu
Luca Antiga
Luis G. Torres
Luping Fang
Mahnaz Maddah
Manson Winsauer
Marcel Prastawa
Martin Styner
Matt Lougheed
Mattea Welch
Matthew Holden
Matthew S. Holden
Mauricio Reyes
Ming-ching Chang
Minjeong Kim
Nabgha Fahrat
Nicole Aucoin
Nigel Goh
Nikos Chrisochoides
Olivier Clatz
Pat Marion
Patricio Vela
Paul Mercea
Pengdong Xiao
Peter Black
Peter Karasev
Peter Savadjiev
Pietro Nardelli
Qing Pan
Rick Herrick
Rob MacLeod
Ron Kikinis
Ruifeng Chen
Ryan Eckbo
S
Salma Bengali
Sam Song
Stefan Bauer
Stefan Lienhard
Steve Pieper
Sunil Kumar
Sylvain Bouix
Tamas Ungi
Thomas Fejes
Tina Kapur
Tobias Penzkofer
Vinicius Boen
Vivek Narayan
Xiaofeng Liu
Xiaojun Chen
Xiaolei Chen
y Wells
Yi Gao
- Carrera Slice
- Fast Grow Cut Effect
- i Gyne
- LAScar Segmenter
- Needle Finder
- Segmentation Aided Registration
