Slicer3:Registration

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Modules for Automated Registration

Modules for Interactive/Manual Registration

Auxilary Modules

  • Transformation matrices derived from the above modules can be used as input for resampling other volumes (including DTI) using the Resample Volume 2 module.
  • ROI Volume can be used to define a local box region to be considered only for automated registration.
  • Fiducials Module is used to place fiducial pairs that can be used to run Fiducial-based registration or to evaluate registration quality
  • Data Module is used to apply transforms on the fly to one or more volumes, to resample and concatenate transforms.
  • Interactive Editor can be used to draw/define ROI regions that can be used as mask input to the automated registration.
  • Otsu's Segmentation Module is an automated thresholding technique that can also be used to quickly identify your object from the background and use the resulting label-map as mask in automated registration
  • DTI resample module is used to apply a given transform to the DTI tensor data.
  • Checkerboard Filter can be used to evaluate registration quality
  • Resample Volume can be used to apply a given transform to a volume, with specific interpolation settings.
  • Resample Volume2 (Francois Budin)
  • Subtract Images can be used to evaluate registration quality, particularly of intra-subject intra-modality cases.

Use cases

Work in progress

NAMIC:Projects:RegistrationImprovement