Difference between revisions of "Modules:QDECModule-Documentation-3.4"
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===Source code & documentation=== | ===Source code & documentation=== | ||
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*[http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/QdecModule/vtkQdecModuleGUI.cxx vtkQdecModuleGUI.cxx], [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/QdecModule/vtkQdecModuleGUI.h vtkQdecModuleGUI.h] | *[http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/QdecModule/vtkQdecModuleGUI.cxx vtkQdecModuleGUI.cxx], [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/QdecModule/vtkQdecModuleGUI.h vtkQdecModuleGUI.h] | ||
| − | * | + | *[http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/QdecModule/vtkQdecModuleLogic.cxx vtkQdecModuleLogic.cxx], [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/QdecModule/vtkQdecModuleLogic.h vtkQdecModuleLogic.h] |
| + | *[http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/QdecModule/vtkGDFReader.cxx vtkGDFReader.cxx], [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/QdecModule/vtkGDFReader.h vtkGDFReader.h] | ||
| + | Library Source Code: | ||
| + | *[http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecContrast.cpp QdecContrast.cpp], [http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecContrast.h QdecContrast.h] | ||
| + | *[http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecDataTable.cpp QdecDataTable.cpp], [http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecDataTable.h QdecDataTable.h] | ||
| + | *[http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecFactor.cpp QdecFactor.cpp], [http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecFactor.h QdecFactor.h] | ||
| + | *[http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecGlmDesign.cpp QdecGlmDesign.cpp], [http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecGlmDesign.h QdecGlmDesign.h] | ||
| + | *[http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecGlmFit.cpp QdecGlmFit.cpp], [http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecGlmFit.h QdecGlmFit.h] | ||
| + | *[http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecGlmFitResults.cpp QdecGlmFitResults.cpp], [http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecGlmFitResults.h QdecGlmFitResults.h] | ||
| + | *[http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecProject.cpp QdecProject.cpp], [http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecProject.h QdecProject.h] | ||
| + | *[http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecSubject.cpp QdecSubject.cpp], [http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecSubject.h QdecSubject.h] | ||
| + | *[http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecUtilities.cpp QdecUtilities.cpp], [http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/QdecUtilities.h QdecUtilities.h] | ||
| + | *[http://viewvc.slicer.org/viewcvs.cgi/trunk/Libs/Qdec/vtkFreeSurferReaders.tcl vtkFreeSurferReaders.tcl] | ||
| + | |||
| + | Module Doxygen documentation: | ||
| − | |||
*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classvtkQdecModuleGUI.html GUI] | *[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classvtkQdecModuleGUI.html GUI] | ||
*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classvtkQdecModuleLogic.html Logic] | *[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classvtkQdecModuleLogic.html Logic] | ||
| + | *[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classvtkGDFReader.html GDF Reader] | ||
| + | |||
| + | Library Doxygen documentation: | ||
*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecGlmDesign.html GLM Design] | *[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecGlmDesign.html GLM Design] | ||
*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecGlmFit.html GLM Fit] | *[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecGlmFit.html GLM Fit] | ||
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*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecSubject.html Subject] | *[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecSubject.html Subject] | ||
*[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecUtilities.html Utilities] | *[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/classQdecUtilities.html Utilities] | ||
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== More Information == | == More Information == | ||
Revision as of 20:36, 25 February 2009
Home < Modules:QDECModule-Documentation-3.4Return to Slicer 3.4 Documentation
QDEC
QDEC
General Information
Module Type & Category
Type: Interactive
Category: Informatics
Authors, Collaborators & Contact
- Nicole Aucoin: Brigham and Women's Hospital
- Nick Schmansky: MGH
- Doug Greve: MGH
- Contact: Nicole Aucoin, nicole@bwh.harvard.edu
Module Description
The Qdec Module provides support for the QDEC program from MGH: Query, Design, Estimate, Contrast.
Usage
Examples, Use Cases & Tutorials
- This module is useful for visualising the output of FreeSurfer's GLM processing
- 2007 Project Week page
- Presentation from 2007
Quick Tour of Features and Use
Before you start: Set up a subjects directory and set your SUBJECTS_DIR environment variable (you'll need to restart Slicer3). In that directory, put the set of subjects you wish to analyse, along with the fsaverage subject. Then make a subdirectory qdec, and in it place your qdec.table.dat file along with any .level files describing the discrete factors (ie gender.levels will have 'male' and 'female' on two separate lines).
You can also load precomputed .qdec archives using the 'Load Results Data File' button. This requires unzip and rm, and you can point Slicer to these applications via the Application Settings interface (View->Application Settings).
Once the results are loaded, you can plot results at various vertices by setting the setting the 3DViewer mouse mode to 'pick' using the toolbar button.
- Subjects panel:
- Design panel:
- Display panel:
Development
Dependencies
The QDEC library (included with Slicer3) is required for this module. FreeSurfer is required for this module's use in calculating new GLM results, but is not necessary for loading pre computed ones.
Known bugs
Follow this link to the Slicer3 bug tracker.
Usability issues
Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing.
Source code & documentation
Module Source Code:
- vtkQdecModuleGUI.cxx, vtkQdecModuleGUI.h
- vtkQdecModuleLogic.cxx, vtkQdecModuleLogic.h
- vtkGDFReader.cxx, vtkGDFReader.h
Library Source Code:
- QdecContrast.cpp, QdecContrast.h
- QdecDataTable.cpp, QdecDataTable.h
- QdecFactor.cpp, QdecFactor.h
- QdecGlmDesign.cpp, QdecGlmDesign.h
- QdecGlmFit.cpp, QdecGlmFit.h
- QdecGlmFitResults.cpp, QdecGlmFitResults.h
- QdecProject.cpp, QdecProject.h
- QdecSubject.cpp, QdecSubject.h
- QdecUtilities.cpp, QdecUtilities.h
- vtkFreeSurferReaders.tcl
Module Doxygen documentation:
Library Doxygen documentation:
More Information
Acknowledgment
This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
