Difference between revisions of "EMSegmenter-Tasks:Template"

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-- how many set of images did you use <br>
 
-- how many set of images did you use <br>
 
-- where did you get the data from <br>
 
-- where did you get the data from <br>
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-- example images of atlas
 
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Revision as of 21:52, 8 December 2010

Home < EMSegmenter-Tasks:Template

Return to EMSegmenter Task Overview Page

This wiki template can be used for new tasks

Description

-- Data Assumption
-- description of pipeline with citations to algorithms used

Anatomical Tree

-- Define Anatomical Tree used in mrml file - first list the complete name and then the abbreviating used in the mrml file

  • root
    • background (BG)
      • air (AIR)

Atlas

- how did you construct the atlas ?
-- what did you do for skull stripping or any other preprocessing
-- What did you do for group registration
-- how did you generate the segmentations
-- how many set of images did you use
-- where did you get the data from
-- example images of atlas

Atlas was generated based on 82 scans and corresponding segmentations provided by Psychiatry Neuroimaging Laboratory, BWH. We registered the scans to a preselected template via Warfield et al. 2001.
Image Dimension = 256 x 256 x 124
Image Spacing = 0.9375 x 0.9375 x 1.5

EMSegmenter MRI-Human-Brain Template 420x420.png EMSegmenter MRI-Human-Brain CSF 420x420.png EMSegmenter MRI-Human-Brain GM 420x420.png EMSegmenter MRI-Human-Brain WM 420x420.png
Template (T1) CSF GM WM

Result

MRI-Human-Brain-T1.png
MRI-Human-Brain-Labelmap.png

Acknowledgment

The construction of the pipeline was supported by funding from NIH NCRR 2P41RR013218 Supplement.

Citations