Difference between revisions of "Documentation/Nightly/Extensions/SkeletalRepresentation"

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Hippo_mesh.png|The surface mesh of hippocampus  
 
Hippo_mesh.png|The surface mesh of hippocampus  
 
New_srep.png|Visualize the s-rep of the hippocampus
 
New_srep.png|Visualize the s-rep of the hippocampus
 +
Initialize.png|Initialize the s-rep of the hippocampus
 
</gallery>
 
</gallery>
  

Revision as of 19:32, 2 January 2019

Home < Documentation < Nightly < Extensions < SkeletalRepresentation

Introduction and Acknowledgements

Acknowledgements: This work is part of Slicer Shape Analysis Toolbox (SlicerSALT), funded by NIH NIBIB R01EB021391 (Shape Analysis Toolbox for Medical Image Computing Projects), as well as the Slicer community.

Author: Zhiyuan Liu
Contributors: Pablo Hernandez-Cerdan, Jean-Christophe Fillion-Robin, Beatriz Paniagua, Jared Vicory, Junpyo Hong, Stephen M. Pizer
Contact: Zhiyuan Liu, zhiy at cs dot unc dot edu

Extension Description

This extension is an open source tool to establish, optimize and visualize skeletal representation (abbreviated as s-rep) of 3D objects in biomedical images. The main features of this extension include:

  • Establish an s-rep by mean curvature flow of an object boundary
  • Refine an s-rep to fit an object boundary

Modules

  • Skeletal Representation Initializer
  • Skeletal Representation Optimizer
  • Skeletal Representation Visualizer

Use Cases

Sample data can be found here.

Tutorials

Similar Extensions

NA

References