Difference between revisions of "Documentation/Nightly/Extensions/SkeletalRepresentation"
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'''Acknowledgements:''' This work is part of Slicer Shape Analysis Toolbox ([http://salt.slicer.org/ SlicerSALT]), funded by NIH NIBIB R01EB021391 (Shape Analysis Toolbox for Medical Image Computing Projects), as well as the [https://www.slicer.org/ Slicer community].<br /> | '''Acknowledgements:''' This work is part of Slicer Shape Analysis Toolbox ([http://salt.slicer.org/ SlicerSALT]), funded by NIH NIBIB R01EB021391 (Shape Analysis Toolbox for Medical Image Computing Projects), as well as the [https://www.slicer.org/ Slicer community].<br /> | ||
| − | '''Author:''' Zhiyuan Liu<br /> | + | '''Author:''' [http://www.cs.unc.edu/~zhiy/ Zhiyuan Liu]<br /> |
| − | '''Contributors:''' Pablo Hernandez-Cerdan, Jean-Christophe Fillion-Robin, Beatriz Paniagua, Jared Vicory, Junpyo Hong, Stephen M. Pizer<br /> | + | '''Contributors:''' Pablo Hernandez-Cerdan, [https://www.kitware.com/jean-christophe-fillion-robin/ Jean-Christophe Fillion-Robin], [https://www.kitware.com/beatriz-paniagua/ Beatriz Paniagua], [https://www.kitware.com/jared-vicory/ Jared Vicory], Junpyo Hong, [http://www.cs.unc.edu/~smp/ Stephen M. Pizer]<br /> |
'''Contact:''' Zhiyuan Liu, zhiy at cs dot unc dot edu | '''Contact:''' Zhiyuan Liu, zhiy at cs dot unc dot edu | ||
Revision as of 01:11, 23 October 2019
Home < Documentation < Nightly < Extensions < SkeletalRepresentationContents
Introduction and Acknowledgements
Acknowledgements: This work is part of Slicer Shape Analysis Toolbox (SlicerSALT), funded by NIH NIBIB R01EB021391 (Shape Analysis Toolbox for Medical Image Computing Projects), as well as the Slicer community.
Author: Zhiyuan Liu
Contributors: Pablo Hernandez-Cerdan, Jean-Christophe Fillion-Robin, Beatriz Paniagua, Jared Vicory, Junpyo Hong, Stephen M. Pizer
Contact: Zhiyuan Liu, zhiy at cs dot unc dot edu
Extension Description
This extension is an open source tool to establish, optimize and visualize skeletal representation (abbreviated as s-rep) of 3D objects in biomedical images. The main features of this extension include:
- Establish an s-rep by mean curvature flow of an object boundary
- Refine an s-rep to fit an object boundary
Icon of the extension
Modules
- Skeletal Representation Initializer
- Skeletal Representation Optimizer
- Skeletal Representation Visualizer
Use Cases
Sample data can be found here.
The surface mesh of hippocampus
Visualize the s-rep of the hippocampus
Initialize the s-rep of the hippocampus
Tutorials
Tutorial for visualization
Tutorial for initialization
Tutorial for refinement
Similar Extensions
NA
References
- Stephen M. Pizer, Junpyo Hong, Jared Vicory, J. S. Marron, and others, "Object Shape Representation via Skeletal Models (s-reps) and Statistical Analysis" in Riemannian Geometric Statistics in Medical Image Analysis, no. (Xavier Pennec, Stefan Sommer, and Tom Fletcher, eds.), 2019.
- Source code can be found https://github.com/KitwareMedical/SlicerSkeletalRepresentation
