Difference between revisions of "Documentation/Nightly/Extensions/SkeletalRepresentation"

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== References ==
 
== References ==
 
* Stephen M. Pizer, Junpyo Hong, Jared Vicory, J. S. Marron, and others, "[http://midag.cs.unc.edu/pubs/papers/xavier_book_2019.pdf Object Shape Representation via Skeletal Models (s-reps) and Statistical Analysis]" in Riemannian Geometric Statistics in Medical Image Analysis, no. (Xavier Pennec, Stefan Sommer, and Tom Fletcher, eds.), 2019.
 
* Stephen M. Pizer, Junpyo Hong, Jared Vicory, J. S. Marron, and others, "[http://midag.cs.unc.edu/pubs/papers/xavier_book_2019.pdf Object Shape Representation via Skeletal Models (s-reps) and Statistical Analysis]" in Riemannian Geometric Statistics in Medical Image Analysis, no. (Xavier Pennec, Stefan Sommer, and Tom Fletcher, eds.), 2019.
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* Source code can be found https://github.com/KitwareMedical/SlicerSkeletalRepresentation

Revision as of 19:52, 2 January 2019

Home < Documentation < Nightly < Extensions < SkeletalRepresentation

Introduction and Acknowledgements

Acknowledgements: This work is part of Slicer Shape Analysis Toolbox (SlicerSALT), funded by NIH NIBIB R01EB021391 (Shape Analysis Toolbox for Medical Image Computing Projects), as well as the Slicer community.

Author: Zhiyuan Liu
Contributors: Pablo Hernandez-Cerdan, Jean-Christophe Fillion-Robin, Beatriz Paniagua, Jared Vicory, Junpyo Hong, Stephen M. Pizer
Contact: Zhiyuan Liu, zhiy at cs dot unc dot edu

Extension Description

This extension is an open source tool to establish, optimize and visualize skeletal representation (abbreviated as s-rep) of 3D objects in biomedical images. The main features of this extension include:

  • Establish an s-rep by mean curvature flow of an object boundary
  • Refine an s-rep to fit an object boundary

Modules

  • Skeletal Representation Initializer
  • Skeletal Representation Optimizer
  • Skeletal Representation Visualizer

Use Cases

Sample data can be found here.

Tutorials

Similar Extensions

NA

References