Difference between revisions of "Documentation/Nightly/Extensions/CardiacMRIToolkit"

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{{documentation/{{documentation/version}}/module-introduction-row}}
 
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This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
 
This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the [http://www.na-mic.org/ NA-MIC website].<br>
Authors: Alan Morris, Salma Bengali, CARMA Center, University of Utah<br>
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Authors: Alan Morris, Umme Salma Bengali, CARMA Center, University of Utah<br>
 
Contributors: Greg Gardner, Josh Cates, Rob MacLeod, Eugene Kholmovski, CARMA Center, University of Utah<br>
 
Contributors: Greg Gardner, Josh Cates, Rob MacLeod, Eugene Kholmovski, CARMA Center, University of Utah<br>
 
Contacts: Alan Morris: <email>alan.morris@carma.utah.edu</email>, Salma Bengali: <email>salma.bengali@carma.utah.edu</email><br>
 
Contacts: Alan Morris: <email>alan.morris@carma.utah.edu</email>, Salma Bengali: <email>salma.bengali@carma.utah.edu</email><br>
Website: [http://carmacenter.org http://carmacenter.org] <br>
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Website: [http://capulet.med.utah.edu/namic/cmrslicer/ Slicer CMR Toolkit] <br> [http://carmacenter.org http://carmacenter.org] <br>
 
[http://www.na-mic.org/Wiki/index.php/DBP3:Utah http://www.na-mic.org/Wiki/index.php/DBP3:Utah]
 
[http://www.na-mic.org/Wiki/index.php/DBP3:Utah http://www.na-mic.org/Wiki/index.php/DBP3:Utah]
 
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{{documentation/{{documentation/version}}/extension-section|Extension Description}}
 
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[[Image:CMRTK-logo.png]]
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The Cardiac MRI Toolkit extension consists of several modules that can be used in the analysis of cardiac LGE-MRI images for the purpose of studying cardiac arrhythmia.  
 
The Cardiac MRI Toolkit extension consists of several modules that can be used in the analysis of cardiac LGE-MRI images for the purpose of studying cardiac arrhythmia.  
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*[[Documentation/{{documentation/version}}/Modules/SlicerModuleAxialDilate|2D Axial Dilate Filter]]
 
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleAxialDilate|2D Axial Dilate Filter]]
 
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleBooleanRemove|Boolean REMOVE Filter]]
 
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleBooleanRemove|Boolean REMOVE Filter]]
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleThresholdModel|Threshold Model]]
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*[[Documentation/{{documentation/version}}/Modules/SlicerModuleThresholdModel|Scar Visualization]]
 
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleIsolatedConnected|Isolated Connected Image Filter]]
 
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleIsolatedConnected|Isolated Connected Image Filter]]
 
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleConnectedThreshold|Connected Threshold Image Filter]]
 
*[[Documentation/{{documentation/version}}/Modules/SlicerModuleConnectedThreshold|Connected Threshold Image Filter]]
 
*[[Documentation/{{documentation/version}}/Modules/AutomatedLASegmentation|Automated LA Segmentation]]
 
*[[Documentation/{{documentation/version}}/Modules/AutomatedLASegmentation|Automated LA Segmentation]]
 
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*[[Documentation/{{documentation/version}}/Modules/LASegmentationWorkflow|LA Segmentation Workflow]]
 
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* Cardiac LGE-MRI image registration
 
* Cardiac LGE-MRI image registration
 
* Various operations on segmentation masks
 
* Various operations on segmentation masks
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{{documentation/{{documentation/version}}/extension-section|Lookup Table}}
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*[[Documentation/{{documentation/version}}/Modules/CMRToolkitColorLUT|Lookup Table]]
  
 
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{{documentation/{{documentation/version}}/extension-section|Tutorials}}
 
{{documentation/{{documentation/version}}/extension-section|Tutorials}}
Tutorials for the modules can be found on their respective pages.  
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*[[Media: Cardiac_MRI_Toolkit_Tutorial_Summer2013.pptx|Cardiac MRI Toolkit Tutorial]]
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*[http://wiki.na-mic.org/Wiki/index.php/File:CMRToolkit_SummerTutorialContest2013_Videos_Part1.zip Tutorial Videos Part 1]
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*[http://wiki.na-mic.org/Wiki/index.php/File:CMRToolkit_SummerTutorialContest2013_Videos_Part2.zip Tutorial Videos Part 2]
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Latest revision as of 00:09, 27 October 2015

Home < Documentation < Nightly < Extensions < CardiacMRIToolkit

For the stable Slicer documentation, visit the 4.10 page.

Introduction and Acknowledgements

This work is part of the National Alliance for Medical Image Computing (NA-MIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149. Information on NA-MIC can be obtained from the NA-MIC website.
Authors: Alan Morris, Umme Salma Bengali, CARMA Center, University of Utah
Contributors: Greg Gardner, Josh Cates, Rob MacLeod, Eugene Kholmovski, CARMA Center, University of Utah
Contacts: Alan Morris: <email>alan.morris@carma.utah.edu</email>, Salma Bengali: <email>salma.bengali@carma.utah.edu</email>
Website: Slicer CMR Toolkit
http://carmacenter.org
http://www.na-mic.org/Wiki/index.php/DBP3:Utah

The University of Utah Health Sciences  

Extension Description

CMRTK-logo.png

The Cardiac MRI Toolkit extension consists of several modules that can be used in the analysis of cardiac LGE-MRI images for the purpose of studying cardiac arrhythmia.

Modules

Use Cases

  • Sample data:
  • Automatic scar detection from cardiac LGE-MRI scans
  • Segmentation of the heart
  • Cardiac LGE-MRI image registration
  • Various operations on segmentation masks

Lookup Table

Tutorials


Information for Developers

The source code for this extension can be found at the CARMA GitHub repository.