Difference between revisions of "Documentation/4.3/Extensions/SlicerRT"

From Slicer Wiki
Jump to: navigation, search
(Nightly -> 4.3)
 
Line 14: Line 14:
 
* Andras Lasso, <email>lasso@cs.queensu.ca</email>
 
* Andras Lasso, <email>lasso@cs.queensu.ca</email>
 
* Mailing list, <email>slicerrt@alerts.assembla.com</email> (need to register to [http://www.assembla.com Assembla] using the email address from which the email is sent)
 
* Mailing list, <email>slicerrt@alerts.assembla.com</email> (need to register to [http://www.assembla.com Assembla] using the email address from which the email is sent)
−
* [https://www.assembla.com/spaces/slicerrt/wiki/How_to_report_an_error How to report an error]
+
* [[Documentation/SlicerRT/HowToReportAnError|How to report an error]]
 
Website: [http://slicerrt.github.io slicerrt.org]<br>
 
Website: [http://slicerrt.github.io slicerrt.org]<br>
 
License: [http://www.slicer.org/pages/LicenseText Slicer license]<br>
 
License: [http://www.slicer.org/pages/LicenseText Slicer license]<br>
−
'''Download/install:''' install 3D Slicer, start 3D Slicer, open the Extension Manager, install the SlicerRT extension (see more details [https://www.assembla.com/spaces/slicerrt/wiki/SlicerRt_users_guide in the installation section])
+
'''Download/install:''' install 3D Slicer, start 3D Slicer, open the Extension Manager, install the SlicerRT extension (see more details [http://slicerrt.github.io/Download.html on the download page])
  
 
<!--
 
<!--
Line 31: Line 31:
 
[[Image:SlicerRT_Logo_2.0_128x128.png]]
 
[[Image:SlicerRT_Logo_2.0_128x128.png]]
 
|
 
|
−
SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform.
+
* SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform.<br>SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.
−
SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.
 
  
−
The SlicerRT extension incorporates [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] modules and algorithms.
+
* The SlicerRT extension incorporates [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] modules and algorithms.
 +
 
 +
* Additional information for users can be found on the [[Documentation/SlicerRT/UsersGuide|User's guide]] page <br>
 
|
 
|
 
|}
 
|}
Line 45: Line 46:
  
 
*[[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]
 
*[[Documentation/{{documentation/version}}/Modules/DicomRtImport|DICOM-RT import]]
 +
*[[Documentation/{{documentation/version}}/Modules/DicomRtExport|DICOM-RT export]]
 
*[[Documentation/{{documentation/version}}/Modules/Contours|Contours]]
 
*[[Documentation/{{documentation/version}}/Modules/Contours|Contours]]
 
*[[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
 
*[[Documentation/{{documentation/version}}/Modules/DoseVolumeHistogram|Dose volume histogram]]
Line 57: Line 59:
 
* Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)
 
* Modules from [[Documentation/{{documentation/version}}/Extensions/Plastimatch|Plastimatch]] (Greg Sharp)
 
**[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]] (Greg Sharp)
 
**[[Documentation/{{documentation/version}}/Modules/PlmBSplineDeformableRegistration|Plastimatch Automatic deformable image registration]] (Greg Sharp)
−
**[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]] (Greg Sharp)
 
−
**[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
 
**[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]] (Greg Sharp)
 
**[[Documentation/{{documentation/version}}/Modules/PlmLANDWARP|Plastimatch LANDWARP Landmark]] (Greg Sharp)
 
**[[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/PlmXFORMWARP|Plastimatch XFORMWARP]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
<!--
 
<!--
 +
**[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTImport|Plastimatch DICOM-RT import]] (Greg Sharp)
 +
**[[Documentation/{{documentation/version}}/Modules/PlmDICOMRTExport|Plastimatch DICOM-RT export]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/PlmDoseComparison|Plastimatch Dose Comparison]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/PlmDoseComparison|Plastimatch Dose Comparison]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/PlmDoseVolumeHistogram|Plastimatch Dose Volume Histogram]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
 
**[[Documentation/{{documentation/version}}/Modules/PlmDoseVolumeHistogram|Plastimatch Dose Volume Histogram]] (Greg Sharp)[[image:UnderConstruction.png|tumb|10px]]
Line 73: Line 75:
 
* Evaluation of the effect of image-based non-rigid patient motion compensation
 
* Evaluation of the effect of image-based non-rigid patient motion compensation
 
* Dose accumulation with motion compensation
 
* Dose accumulation with motion compensation
 +
* Evaluation of gel dosimetry
 +
* Testing of treatment planning algorithms
  
−
| [[File:SlicerRT_0.10_Montage.png|1024px|SlicerRT highlights]]
+
| [[File:SlicerRt_Montage.jpg|1024px|SlicerRT highlights]]
 
|}
 
|}
  
Line 85: Line 89:
 
** Workshop material: [http://www.na-mic.org/Wiki/index.php/File:Pinter_MedUni2013_Workshop.pdf download] from NA-MIC.org
 
** Workshop material: [http://www.na-mic.org/Wiki/index.php/File:Pinter_MedUni2013_Workshop.pdf download] from NA-MIC.org
 
* RSNA 2012 tutorial
 
* RSNA 2012 tutorial
−
** Tutorial description: [https://www.assembla.com/spaces/slicerrt/wiki/20121127_Slicer_tutorials_at_RSNA_2012 SlicerRT wiki: Slicer tutorials at RSNA 2012]
+
** Tutorial description: [http://www.donotlink.com/bEo SlicerRT wiki: Slicer tutorials at RSNA 2012]
 +
<!-- Original link: https://www.assembla.com/spaces/slicerrt/wiki/20121127_Slicer_tutorials_at_RSNA_2012 -->
 
** Sample data: [http://slicer.kitware.com/midas3/folder/859 download] SlicerRT ART dose verification data from Midas server
 
** Sample data: [http://slicer.kitware.com/midas3/folder/859 download] SlicerRT ART dose verification data from Midas server
 
* Summer NA-MIC week 2012 tutorial
 
* Summer NA-MIC week 2012 tutorial
−
** Tutorial presentation: [https://www.assembla.com/spaces/slicerrt/documents/aAuMq81Eqr4ztvacwqjQXA/download/aAuMq81Eqr4ztvacwqjQXA download] from the SlicerRT website
+
** Tutorial presentation: [http://www.donotlink.com/bEp download] from the SlicerRT website
−
** Sample data: [https://www.assembla.com/spaces/slicerrt/documents/bMuwgYTKur4yP-acwqjQWU/download/bMuwgYTKur4yP-acwqjQWU download] from the SlicerRT website
+
<!-- Original link: https://www.assembla.com/spaces/slicerrt/documents/aAuMq81Eqr4ztvacwqjQXA/download/aAuMq81Eqr4ztvacwqjQXA -->
 +
** Sample data: [http://www.donotlink.com/bEq download] from the SlicerRT website
 +
<!-- Original link: https://www.assembla.com/spaces/slicerrt/documents/bMuwgYTKur4yP-acwqjQWU/download/bMuwgYTKur4yP-acwqjQWU -->
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
Line 97: Line 104:
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/extension-section|References}}
 
{{documentation/{{documentation/version}}/extension-section|References}}
−
* [https://www.assembla.com/spaces/slicerrt/wiki/SlicerRt_users_guide SlicerRT users guide pages]
+
==How to cite==
 +
Please cite the following paper when referring to Plus in your publication:<br>
 +
C. Pinter, A. Lasso, A. Wang, D. Jaffray and G. Fichtinger, [http://perk.cs.queensu.ca/sites/perk.cs.queensu.ca/files/Pinter2012_0.pdf "SlicerRT – Radiation therapy research toolkit for 3D Slicer"], Med. Phys., 39(10) pp. 6332-6338, 2012
 +
<pre>
 +
@ARTICLE{Pinter2012,
 +
  author = {Pinter, C. and Lasso, A. and Wang, A. and Jaffray, D. and Fichtinger, G.},
 +
  title = {SlicerRT – Radiation therapy research toolkit for 3D Slicer},
 +
  journal = {Med. Phys.},
 +
  year = {2012},
 +
  volume = {39},
 +
  number = {10},
 +
  pages = {6332-6338},
 +
}
 +
</pre>
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
 
{{documentation/{{documentation/version}}/extension-section|Information for Developers}}
 +
* [http://www.donotlink.com/bEr SlicerRT developers wiki page]
 +
<!-- Original link: https://www.assembla.com/spaces/slicerrt/wiki/SlicerRt_developers_page -->
  
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->
 
{{documentation/{{documentation/version}}/extension-footer}}
 
{{documentation/{{documentation/version}}/extension-footer}}
 
<!-- ---------------------------- -->
 
<!-- ---------------------------- -->

Revision as of 17:43, 5 November 2013

Home < Documentation < 4.3 < Extensions < SlicerRT


For the latest Slicer documentation, visit the read-the-docs.


Cancer Care Ontario SparKit SparKit

Introduction and Acknowledgements

Authors: Csaba Pinter (PerkLab, Queen's University), Andras Lasso (PerkLab, Queen's University), Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)
Contributors: Greg Sharp (Massachusetts General Hospital), Steve Pieper (Isomics)
Contacts:

  • Andras Lasso, <email>lasso@cs.queensu.ca</email>
  • Mailing list, <email>slicerrt@alerts.assembla.com</email> (need to register to Assembla using the email address from which the email is sent)
  • How to report an error

Website: slicerrt.org
License: Slicer license
Download/install: install 3D Slicer, start 3D Slicer, open the Extension Manager, install the SlicerRT extension (see more details on the download page)

Extension Description

SlicerRT Logo 2.0 128x128.png

  • SlicerRT is one of the themes of the SparKit (Software Platform and Adaptive Radiotherapy Kit) project with the goal of making 3D Slicer a powerful radiotherapy research platform.
    SparKit is a project funded by Cancer Care Ontarioand the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions.
  • The SlicerRT extension incorporates Plastimatch modules and algorithms.
  • Additional information for users can be found on the User's guide page

Modules

Use Cases

  • Comparison of dose maps and dose volume histograms from various treatment planning systems
  • Evaluation of the effect of image-based non-rigid patient motion compensation
  • Dose accumulation with motion compensation
  • Evaluation of gel dosimetry
  • Testing of treatment planning algorithms
 SlicerRT highlights

Tutorials

  • Summer NA-MIC week 2013 tutorial (recommended)
    • Tutorial presentation: download from Slicer wiki
    • Sample data: download from MIDAS
  • ECR 2013 - Medical University Vienna workshop
    • Workshop material: download from NA-MIC.org
  • RSNA 2012 tutorial
  • Summer NA-MIC week 2012 tutorial
    • Tutorial presentation: download from the SlicerRT website
    • Sample data: download from the SlicerRT website

Similar Extensions

  • Plastimatch: SlicerRT and Plastimatch are complementary software libraries. Plastimatch focuses on delivering new computational methods radiotherapy, while SlicerRT aims for providing an easy-to-use interface for a wide range of stable, well-tested radiotherapy related features. SlicerRT uses Plastimatch internally for certain operations.

References

How to cite

Please cite the following paper when referring to Plus in your publication:
C. Pinter, A. Lasso, A. Wang, D. Jaffray and G. Fichtinger, "SlicerRT – Radiation therapy research toolkit for 3D Slicer", Med. Phys., 39(10) pp. 6332-6338, 2012 

@ARTICLE{Pinter2012,
  author = {Pinter, C. and Lasso, A. and Wang, A. and Jaffray, D. and Fichtinger, G.},
  title = {SlicerRT – Radiation therapy research toolkit for 3D Slicer},
  journal = {Med. Phys.},
  year = {2012},
  volume = {39},
  number = {10},
  pages = {6332-6338},
}

Information for Developers

Retrieved from "https://www.slicer.org/w/index.php?title=Documentation/4.3/Extensions/SlicerRT&oldid=36367"