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| | :Quick overview about Slicer | | :Quick overview about Slicer |
| | | | |
| − | *[[Documentation/{{documentation/version}}/Training|Training pages]] | + | *[https://training.slicer.org/ Training pages] |
| | | | |
| | :Information on how to use Slicer {{documentation/version}} | | :Information on how to use Slicer {{documentation/version}} |
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| | :The most effective way to get help from the community | | :The most effective way to get help from the community |
| | | | |
| − | <!--
| |
| − | * [http://slicer-users.65878.n3.nabble.com/ Search users mailing list]
| |
| − | -->
| |
| | ---- | | ---- |
| | <span style="color: #555555; font-size: 18px; font-weight: bold;">How to</span> | | <span style="color: #555555; font-size: 18px; font-weight: bold;">How to</span> |
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| | [[Image:Welcome.png|32px]] [https://slicer.readthedocs.io/en/latest/user_guide/modules/slicerwelcome.html Welcome to Slicer] | | [[Image:Welcome.png|32px]] [https://slicer.readthedocs.io/en/latest/user_guide/modules/slicerwelcome.html Welcome to Slicer] |
| | <br /> | | <br /> |
| − |
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| − | | width="50%" |
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| − |
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| − | {{:{{FULLPAGENAME}}/ModuleExtensionListing/TOC}}
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| | |} | | |} |
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| | :Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself. | | :Real-life example cases of using the Slicer registration tools, incl. datasets and step-by-step instructions to follow and try yourself. |
| | | | |
| − | ----
| |
| − | <span style="color: #555555; font-size: 18px; font-weight: bold;">Documentation in other languages</span>
| |
| − | ----
| |
| − | {{:{{FULLPAGENAME}}/Lang/ES}}
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| − |
| |
| | | | |
| | |} | | |} |
| | | | |
| − | <!--
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| − | {{:{{FULLPAGENAME}}/ModuleExtensionListing}}
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| − | -->
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| − |
| |
| − | {| width="100%" cellspacing="7" cellpadding="2" border="0" align="center" valign="top"
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| − |
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| − | |- style="vertical-align:top; border-style:hidden;"
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| − |
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| − | |
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| − |
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| − | {{:{{FULLPAGENAME}}/ModuleExtensionListing/Extensions_by_name}}
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| − |
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| − | |
| |
| − | <br />
| |
| − | <br />
| |
| − | =Modules by category=
| |
| − |
| |
| − | ==Converters==
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/CropVolume|Crop Volume]] <small>(loadable)</small>
| |
| − | *[[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]] <small>(cli)</small>
| |
| − | *[{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/vectortoscalarvolume.html Vector To Scalar Volume] <small>(scripted)</small>
| |
| − | *[[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOM Series]] <small>(cli)</small>
| |
| − |
| |
| − | ==Diffusion==
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/DMRIInstall|DMRI Install]] <small>(scripted)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Diffusion_Diffusion_Data_Conversion"></span>
| |
| − | ===Diffusion Data Conversion===
| |
| − |
| |
| − | *DWI Convert <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Diffusion_Diffusion_Tensor_Images"></span>
| |
| − | ===Diffusion Weighted Images===
| |
| − |
| |
| − | *BRAINS DWI Cleanup <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Diffusion_Import_and_Export"></span>
| |
| − | ===Import and Export===
| |
| − |
| |
| − | *DWI Convert <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Diffusion_Process"></span>
| |
| − | ===Utilities===
| |
| − |
| |
| − | *BRAINS DWI Cleanup <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTI Volume]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWI Volume]] <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Endoscopy"></span>
| |
| − | ==Endoscopy==
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/Endoscopy|Endoscopy]] <small>(scripted)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Filter"></span>
| |
| − | ==Filter==
| |
| − |
| |
| − | *IslandRemoval <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Filtering"></span>
| |
| − | ==Filtering==
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4 ITK Bias Field Correction]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/ImageLabelCombine|Image Label Combine]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]] <small>(scripted)</small>
| |
| − | *[[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]] <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Filtering_Arithmetic"></span>
| |
| − | ===Arithmetic===
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]] <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Filtering_Denoising"></span>
| |
| − | ===Denoising===
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/MedianImageFilter|Median Image Filter]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Filtering_Morphology"></span>
| |
| − | ===Morphology===
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]] <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_IGT"></span>
| |
| − | ==IGT==
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/OpenIGTLinkIF|OpenIGTLink IF]] <small>(loadable)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Informatics"></span>
| |
| − | ==Informatics==
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/SEG2NRRD|SEG 2 NRRD]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/Tables|Tables]] <small>(loadable)</small>
| |
| − | *[[Documentation/Nightly/Modules/Data|Data]] <small>(loadable)</small>
| |
| − | *DumpSEGFrame <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/Terminologies|Terminologies]] <small>(loadable)</small>
| |
| − | *[[Documentation/Nightly/Modules/Units|Units]] <small>(loadable)</small>
| |
| − | *[{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/dicom.html DICOM] <small>(scripted)</small>
| |
| − | *[[Documentation/Nightly/Modules/SampleData|Sample Data]] <small>(scripted)</small>
| |
| − | *[[Documentation/Nightly/Modules/Colors|Colors]] <small>(loadable)</small>
| |
| − | *[[Documentation/Nightly/Modules/Annotations|Annotations]] <small>(loadable)</small>
| |
| − | *[[Documentation/Nightly/Modules/Markups|Markups]] <small>(loadable)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Informatics_Converters"></span>
| |
| − | ===Converters===
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/EncodeSEG|Encode SEG]] <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Legacy"></span>
| |
| − | ==Legacy==
| |
| − | <span id="Modules_by_category_Legacy_Converters"></span>
| |
| − | ===Converters===
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/BSplineToDeformationField|BSpline To Deformation Field]] <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Legacy_Filtering"></span>
| |
| − | ===Filtering===
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]] <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Legacy_Registration"></span>
| |
| − | ===Registration===
| |
| − |
| |
| − | *Test Grid Transform Registration <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/ExpertAutomatedRegistration|Expert Automated Registration]] <small>(cli)</small>
| |
| − |
| |
| − | ==MultiVolume Support==
| |
| − |
| |
| − | *[https://slicer.readthedocs.io/en/latest/user_guide/modules/multivolumeimporter.html MultiVolume Importer] <small>(scripted)</small>
| |
| − | *[https://slicer.readthedocs.io/en/latest/user_guide/modules/multivolumeexplorer.html MultiVolume Explorer] <small>(loadable)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Quantification"></span>
| |
| − |
| |
| − | ==Quantification==
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PET Standard Uptake Value Computation]] <small>(cli)</small>
| |
| − | *SegmentStatistics <small>(scripted)</small>
| |
| − | *[[Documentation/Nightly/Modules/LabelStatistics|Label Statistics]] <small>(scripted)</small>
| |
| − | *BRAINSLabelStats <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/DataProbe|Data Probe]] <small>(scripted)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Registration"></span>
| |
| − | ==Registration==
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/Transforms|Transforms]] <small>(loadable)</small>
| |
| − | *BRAINSResize <small>(cli)</small>
| |
| − | *PerformMetricTest <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/LandmarkRegistration|Landmark Registration]] <small>(scripted)</small>
| |
| − | *[[Documentation/Nightly/Modules/BRAINSResample|BRAINS Resample]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/BRAINSFit|General registration (BRAINS)]] <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Registration_Specialized"></span>
| |
| − | ===Specialized===
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/ACPCTransform|AC-PC Transform]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINS Demon Warp]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/Reformat|Reformat]] <small>(loadable)</small>
| |
| − | *VBRAINSDemonWarp <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Segmentation"></span>
| |
| − | ==Segmentation==
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/Segmentations|Segmentations]] <small>(loadable)</small>
| |
| − | *[{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/segmenteditor.html Segment Editor] <small>(scripted)</small>
| |
| − | *[[Documentation/Nightly/Modules/Editor|Editor]] <small>(scripted)</small>
| |
| − | *[[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/EMSegment|EMSegment]] <small>(loadable)</small>
| |
| − |
| |
| − | *EMSegmentQuick <small>(loadable)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Segmentation_Specialized"></span>
| |
| − | ===Specialized===
| |
| − |
| |
| − | *BRAINS ROI Auto <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] <small>(cli)</small>
| |
| − | *EMSegment CommandLine <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Surface_Models"></span>
| |
| − |
| |
| − | ==Surface Models==
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]] <small>(scripted)</small>
| |
| − | *[[Documentation/Nightly/Modules/GrayscaleModelMaker|Grayscale Model Maker]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/ModelMaker|Model Maker]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/ModelToLabelMap|Model To LabelMap]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/MergeModels|Merge Models]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/LabelMapSmoothing|LabelMap Smoothing]] <small>(cli)</small>
| |
| − | *[[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]] <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Utilities"></span>
| |
| − | ==Utilities==
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/ScreenCapture|Screen Capture]] <small>(scripted)</small>
| |
| − | *[[Documentation/Nightly/Modules/DataStore|Data Store]] <small>(loadable)</small>
| |
| − | *[{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/dicompatcher.html DICOM Patcher] <small>(scripted)</small>
| |
| − | *BRAINS Strip Rotation <small>(cli)</small>
| |
| − | *EMSegment Transform To New Format <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Utilities_BRAINS"></span>
| |
| − | ===BRAINS===
| |
| − |
| |
| − | *BRAINS Transform Convert <small>(cli)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Wizards"></span>
| |
| − | ==Wizards==
| |
| − |
| |
| − | *[[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]] <small>(scripted)</small>
| |
| − |
| |
| − | <span id="Modules_by_category_Developer_Tools"></span>
| |
| − | ==Developer Tools==
| |
| | | | |
| − | *[[Documentation/Nightly/Modules/Cameras|Cameras]] <small>(loadable)</small>
| + | <span id="Modules_by_category_Diffusion_Diffusion_Data_Conversion"></span><span id="Modules_by_category_Diffusion_Diffusion_Tensor_Images"></span><span id="Modules_by_category_Diffusion_Import_and_Export"></span><span id="Modules_by_category_Diffusion_Process"></span><span id="Modules_by_category_Endoscopy"></span><span id="Modules_by_category_Filter"></span><span id="Modules_by_category_Filtering"></span><span id="Modules_by_category_Filtering_Arithmetic"></span><span id="Modules_by_category_Filtering_Denoising"></span><span id="Modules_by_category_Filtering_Morphology"></span><span id="Modules_by_category_IGT"></span><span id="Modules_by_category_Informatics"></span><span id="Modules_by_category_Informatics_Converters"></span><span id="Modules_by_category_Legacy"></span><span id="Modules_by_category_Legacy_Converters"></span><span id="Modules_by_category_Legacy_Filtering"></span><span id="Modules_by_category_Legacy_Registration"></span><span id="Modules_by_category_Quantification"></span><span id="Modules_by_category_Registration"></span><span id="Modules_by_category_Registration_Specialized"></span><span id="Modules_by_category_Segmentation"></span><span id="Modules_by_category_Segmentation_Specialized"></span><span id="Modules_by_category_Surface_Models"></span><span id="Modules_by_category_Utilities"></span><span id="Modules_by_category_Utilities_BRAINS"></span><span id="Modules_by_category_Wizards"></span><span id="Modules_by_category_Developer_Tools"></span><span id="Modules_by_category_Developer_Tools_DICOM_Plugins"></span> |
| − | *[[Documentation/Nightly/Modules/ExecutionModelTour|Execution Model Tour]] <small>(cli)</small>
| |
| − | *[{{documentation/{{documentation/version}}/slicer-manual-base-url}}/user_guide/modules/extensionwizard.html Extension Wizard] <small>(scripted)</small>
| |
| − | *[[Documentation/Nightly/Modules/EventBroker|Event Broker]]
| |
| − | *Double Arrays <small>(loadable)</small>
| |
| − | | |
| − | <span id="Modules_by_category_Developer_Tools_DICOM_Plugins"></span> | |
| − | ===DICOM Plugins=== | |
| − | | |
| − | *DICOMParametricMapPlugin
| |
| − | *DicomUltrasoundPlugin
| |
| − | *DICOMSegmentationPlugin
| |
| − | *DICOMSlicerDataBundlePlugin
| |
| − | *DICOMTID1500Plugin
| |
| − | *[[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]]
| |
| − | *DICOMScalarVolumePlugin
| |
| − | *DICOMDiffusionVolumePlugin
| |
| − | *DICOMLongitudinalPETCTPlugin
| |
| − | *DicomSroImportPlugin
| |
| − | *[[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]]
| |
| − | *DicomRtImportExportPlugin
| |
| − | *MultiVolumeImporterPlugin
| |
| − | | |
| − | |}
| |
