Difference between revisions of "Documentation/Nightly/SlicerApplication/SupportedDataFormat"
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|bgcolor="LightGreen" align="center"|yes | |bgcolor="LightGreen" align="center"|yes | ||
|bgcolor="LightGreen" align="center"|yes | |bgcolor="LightGreen" align="center"|yes | ||
− | |[[Documentation/{{documentation/version}}/Developers/MRML|Data Model]] | + | |MRML file is a xml-formatted text file with scene metadata and pointers to externally stored data files. [[Documentation/{{documentation/version}}/Developers/MRML|Data Model]] |
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| MRB (Medical Reality Bundle) | | MRB (Medical Reality Bundle) | ||
− | | .mrb, .zip | + | | .mrb, .zip |
|bgcolor="LightGreen" align="center"|yes | |bgcolor="LightGreen" align="center"|yes | ||
|bgcolor="LightGreen" align="center"|yes (.mrb extension only) | |bgcolor="LightGreen" align="center"|yes (.mrb extension only) | ||
− | | | + | |MRB is a binary format encapsulating all scene data (bulk data and metadata). Internally it uses zip format. Any .zip file that contains a self-contained data tree including a .mrml file can be opened. |
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! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Raster Images<br><small>''this includes 2D and 3D images, and more complicated types such as DWI or DTI''</small> | ! scope="col" colspan="4" style="border-bottom: 1px solid grey;"| Raster Images<br><small>''this includes 2D and 3D images, and more complicated types such as DWI or DTI''</small> |
Revision as of 20:30, 6 October 2012
Home < Documentation < Nightly < SlicerApplication < SupportedDataFormat
File formats supported by Slicer Nightly
Format | File Name Extensions | Read | Write | Module |
---|---|---|---|---|
Scenes | Data | |||
MRML (Medical Reality Markup Language File) | .mrml | yes | yes | MRML file is a xml-formatted text file with scene metadata and pointers to externally stored data files. Data Model |
MRB (Medical Reality Bundle) | .mrb, .zip | yes | yes (.mrb extension only) | MRB is a binary format encapsulating all scene data (bulk data and metadata). Internally it uses zip format. Any .zip file that contains a self-contained data tree including a .mrml file can be opened. |
Raster Images this includes 2D and 3D images, and more complicated types such as DWI or DTI |
Volumes | |||
DICOM | .dcm ... | yes[1] | no[2] | DICOM, DICOMToNRRDConverter, CreateDICOMSeries |
NRRD | .nrrd, .nhdr | yes | yes | |
MetaImage | .mhd, .mha | yes | yes | |
VTK | .vtk | yes | yes | |
Analyze | .hdr, .img, .img.gz | yes | yes | |
NifTI | .nia, .nii, .nii.gz | yes | yes | |
BMP | .bmp | yes | yes | |
BioRad | .pic | yes | yes | |
Brains2 | .mask | yes | yes | |
GIPL | .gipl .gipl.gz | yes | yes | |
JPEG | .jpg, .jpeg | yes | yes | |
LSM | .lsm | yes | yes | |
PNG | .png | yes | yes | |
Stimulate | .spr | yes | yes | |
TIFF | .tif, .tiff | yes | yes | |
MGH-NMR | .mgz | yes | yes | |
Models | Models | |||
VTK Polygonal Data | .vtk | yes | yes | |
VTK XML Polygonal Data | .vtp | yes | yes | |
STL | .stl | yes | yes | |
OBJ | .obj | yes | no | |
Others (to be tested) | .g, .byu, .orig, .inflated, .sphere, .white, .smoothwm, .pial | yes | no | |
Fiducials | Annotations | |||
CSV | .fcsv | yes | yes | |
Text | .txt | yes | yes | |
Transforms | Transforms | |||
Transform | .tfm, .mat | yes | yes | |
Text | .txt | yes | yes | |
Transfer Functions | Volume Rendering | |||
Volume Rendering properties | .vp | yes | yes | |
Text | .txt | yes | yes | |
Lookup tables | Colors | |||
Text | .txt, .ctbl | yes | yes | |
Double Arrays | ||||
CSV | .csv | yes | yes |
- ↑ For a number of dMRI formats we recommend use of the DICOM to NRRD converter before loading the data into Slicer.
- ↑ Limited support for writing image volumes in DICOM format is provided by the Create DICOM Series module