Difference between revisions of "Documentation/4.3/Modules/Contours"
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Author: Csaba Pinter (PerkLab, Queen's University)<br> | Author: Csaba Pinter (PerkLab, Queen's University)<br> | ||
Contact: Csaba Pinter, <email>pinter@cs.queensu.ca</email><br> | Contact: Csaba Pinter, <email>pinter@cs.queensu.ca</email><br> | ||
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* Edit contour 1, edit contour 2; see contour 1 while editing contour 2 | * Edit contour 1, edit contour 2; see contour 1 while editing contour 2 | ||
* Create contour node, convert it to (empty) labelmap; do contouring on the labelmapo representation; convert to model | * Create contour node, convert it to (empty) labelmap; do contouring on the labelmapo representation; convert to model | ||
| − | * Create/load labelmap or surface, create Contour node from that in | + | * Create/load labelmap or surface, create Contour node from that in Subject Hierarchy module |
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; Create contour from scratch | ; Create contour from scratch | ||
: In Contours module select 'Create new Contour' in the contour selector drop-down to create a new contour | : In Contours module select 'Create new Contour' in the contour selector drop-down to create a new contour | ||
| − | : In | + | : In Subject Hierarchy module drag&drop new contour from 'Potential subject hierarchy nodes' list to under a structure set in the tree |
| − | : The default representation is an empty Ribbon model. It can be converted to Indexed labelmap in the Contours module and then the labelmap can be edited in the Editor module | + | : The default representation is an empty Ribbon model. It can be converted to Indexed labelmap in the Contours module and then the labelmap '''can be edited in the Editor module''' |
; Create contour from labelmap volume or model | ; Create contour from labelmap volume or model | ||
| − | : In | + | : In Subject Hierarchy module drag&drop the existing representation (labelmap or model) from 'Potential subject hierarchy nodes' list to under a structure set in the tree. This way an encapsulating Contour node gets created and associated to the corresponding color table |
; Create new Structure set from scratch | ; Create new Structure set from scratch | ||
: Right-click on an existing Study node and select 'Create child structure set'. This menu item is only available for Study level nodes | : Right-click on an existing Study node and select 'Create child structure set'. This menu item is only available for Study level nodes | ||
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| + | ;[[Documentation/4.3/Modules/Contours/HowToEdit|Edit an existing contour]] | ||
| + | : See page via link above | ||
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Latest revision as of 17:04, 21 November 2019
Home < Documentation < 4.3 < Modules < Contours
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For the latest Slicer documentation, visit the read-the-docs. |
Introduction and Acknowledgements
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This work is part of the SparKit project, funded by An Applied Cancer Research Unit of Cancer Care Ontario with funds provided by the Ministry of Health and Long-Term Care and the Ontario Consortium for Adaptive Interventions in Radiation Oncology (OCAIRO) to provide free, open-source toolset for radiotherapy and related image-guided interventions. | |||||||
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Module Description
The Contours module manages contours and contour hierarchies.
Use Cases
- Load as ribbon, then compute DVH; the user wants to see the contours in 3D
- Edit contour 1, edit contour 2; see contour 1 while editing contour 2
- Create contour node, convert it to (empty) labelmap; do contouring on the labelmapo representation; convert to model
- Create/load labelmap or surface, create Contour node from that in Subject Hierarchy module
Tutorials
N/A
How to
- Create contour from scratch
- In Contours module select 'Create new Contour' in the contour selector drop-down to create a new contour
- In Subject Hierarchy module drag&drop new contour from 'Potential subject hierarchy nodes' list to under a structure set in the tree
- The default representation is an empty Ribbon model. It can be converted to Indexed labelmap in the Contours module and then the labelmap can be edited in the Editor module
- Create contour from labelmap volume or model
- In Subject Hierarchy module drag&drop the existing representation (labelmap or model) from 'Potential subject hierarchy nodes' list to under a structure set in the tree. This way an encapsulating Contour node gets created and associated to the corresponding color table
- Create new Structure set from scratch
- Right-click on an existing Study node and select 'Create child structure set'. This menu item is only available for Study level nodes
- Edit an existing contour
- See page via link above
Panels and their use
- Current contour(s): Currently selected contour node (vtkMRMLContourNode) or conotur hierarchy node (vtkMRMLContourHierarchyNode)
- Active representation: The active representation (Ribbon model / Indexed labelmap / Closed surface model) of the selected contour. If a hierarchy is selected in which the active representations of the contained contours do not match, Various is indicated
- Change active representation: This box contains controls to convert from one representation to another
Similar Modules
N/A
References
Issue on SlicerRT ticketing system here
Information for Developers
