Difference between revisions of "EMSegmenter-Tasks:Template"

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-- how many set of images did you use <br>
 
-- how many set of images did you use <br>
 
-- where did you get the data from <br>
 
-- where did you get the data from <br>
<br>
+
-- example images of atlas such as
 
 
Atlas was generated based on 82 scans and corresponding segmentations provided by [http://pnl.bwh.harvard.edu/ Psychiatry Neuroimaging Laboratory, BWH]. We registered the scans to a preselected template via Warfield et al. 2001. <BR>
 
Image Dimension = 256 x 256 x 124 <br>
 
Image Spacing  = 0.9375 x 0.9375 x 1.5 <BR>
 
 
 
 
{| class="wikitable"
 
{| class="wikitable"
 
|-
 
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=Result=
 
=Result=
 +
show original scans with segmentation as in the example below <BR>
 
[[Image:MRI-Human-Brain-T1.png|630px]]<br>
 
[[Image:MRI-Human-Brain-T1.png|630px]]<br>
 
[[Image:MRI-Human-Brain-Labelmap.png|630px]]
 
[[Image:MRI-Human-Brain-Labelmap.png|630px]]

Latest revision as of 21:53, 8 December 2010

Home < EMSegmenter-Tasks:Template

Return to EMSegmenter Task Overview Page

This wiki template can be used for new tasks

Description

-- Data Assumption
-- description of pipeline with citations to algorithms used

Anatomical Tree

-- Define Anatomical Tree used in mrml file - first list the complete name and then the abbreviating used in the mrml file

  • root
    • background (BG)
      • air (AIR)

Atlas

- how did you construct the atlas ?
-- what did you do for skull stripping or any other preprocessing
-- What did you do for group registration
-- how did you generate the segmentations
-- how many set of images did you use
-- where did you get the data from
-- example images of atlas such as

EMSegmenter MRI-Human-Brain Template 420x420.png EMSegmenter MRI-Human-Brain CSF 420x420.png EMSegmenter MRI-Human-Brain GM 420x420.png EMSegmenter MRI-Human-Brain WM 420x420.png
Template (T1) CSF GM WM

Result

show original scans with segmentation as in the example below
MRI-Human-Brain-T1.png
MRI-Human-Brain-Labelmap.png

Acknowledgment

The construction of the pipeline was supported by funding from NIH NCRR 2P41RR013218 Supplement.

Citations