Difference between revisions of "User:UpdateBot/Issue-2843-Consolidated-Extension-List/Nightly/ModuleExtensionListing"

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36 categories:
 
36 categories:
 
* [[#Modules_by_category_BRAINS|BRAINS]]
 
* [[#Modules_by_category_BRAINS|BRAINS]]
** [[#Modules_by_category_LabelStatistics|Label Statistics]]
+
** [[#Modules_by_category_BRAINS_LabelStatistics|Label Statistics]]
 
* [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]]
 
* [[#Modules_by_category_Cardiac_MRI_Toolkit|Cardiac MRI Toolkit]]
 
* [[#Modules_by_category_CMF_Registration|CMF Registration]]
 
* [[#Modules_by_category_CMF_Registration|CMF Registration]]
** [[#Modules_by_category_Voxelbase_Registration|Voxelbase Registration]]
+
** [[#Modules_by_category_CMF_Registration_Voxelbase_Registration|Voxelbase Registration]]
 
* [[#Modules_by_category_Converters|Converters]]
 
* [[#Modules_by_category_Converters|Converters]]
 
* [[#Modules_by_category_Developer_Tools|Developer Tools]]
 
* [[#Modules_by_category_Developer_Tools|Developer Tools]]
** [[#Modules_by_category_DICOM_Plugins|DICOM Plugins]]
+
** [[#Modules_by_category_Developer_Tools_DICOM_Plugins|DICOM Plugins]]
** [[#Modules_by_category_Editor_Extensions|Editor Extensions]]
+
** [[#Modules_by_category_Developer_Tools_Editor_Extensions|Editor Extensions]]
** [[#Modules_by_category_Matlab|Matlab]]
+
** [[#Modules_by_category_Developer_Tools_Matlab|Matlab]]
 
* [[#Modules_by_category_Diffusion|Diffusion]]
 
* [[#Modules_by_category_Diffusion|Diffusion]]
** [[#Modules_by_category_Diffusion_Data_Conversion|Diffusion Data Conversion]]
+
** [[#Modules_by_category_Diffusion_Diffusion_Data_Conversion|Diffusion Data Conversion]]
** [[#Modules_by_category_Diffusion_Tensor_Images|Diffusion Tensor Images]]
+
** [[#Modules_by_category_Diffusion_Diffusion_Tensor_Images|Diffusion Tensor Images]]
** [[#Modules_by_category_Diffusion_Weighted_Images|Diffusion Weighted Images]]
+
** [[#Modules_by_category_Diffusion_Diffusion_Weighted_Images|Diffusion Weighted Images]]
** [[#Modules_by_category_FiberAnalysis|Fiber Analysis]]
+
** [[#Modules_by_category_Diffusion_FiberAnalysis|Fiber Analysis]]
** [[#Modules_by_category_Tractography|Tractography]]
+
** [[#Modules_by_category_Diffusion_Tractography|Tractography]]
 
* [[#Modules_by_category_Editor_Effects|Editor Effects]]
 
* [[#Modules_by_category_Editor_Effects|Editor Effects]]
 
* [[#Modules_by_category_EditorEffect|Editor Effect]]
 
* [[#Modules_by_category_EditorEffect|Editor Effect]]
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* [[#Modules_by_category_Exporter|Exporter]]
 
* [[#Modules_by_category_Exporter|Exporter]]
 
* [[#Modules_by_category_Filtering|Filtering]]
 
* [[#Modules_by_category_Filtering|Filtering]]
** [[#Modules_by_category_Arithmetic|Arithmetic]]
+
** [[#Modules_by_category_Filtering_Arithmetic|Arithmetic]]
** [[#Modules_by_category_Denoising|Denoising]]
+
** [[#Modules_by_category_Filtering_Denoising|Denoising]]
** [[#Modules_by_category_Morphology|Morphology]]
+
** [[#Modules_by_category_Filtering_Morphology|Morphology]]
 
* [[#Modules_by_category_IGT|IGT]]
 
* [[#Modules_by_category_IGT|IGT]]
 
* [[#Modules_by_category_Informatics|Informatics]]
 
* [[#Modules_by_category_Informatics|Informatics]]
 
* [[#Modules_by_category_Legacy|Legacy]]
 
* [[#Modules_by_category_Legacy|Legacy]]
** [[#Modules_by_category_Converters|Converters]]
+
** [[#Modules_by_category_Legacy_Converters|Converters]]
** [[#Modules_by_category_Diffusion|Diffusion]]
+
** [[#Modules_by_category_Legacy_Diffusion|Diffusion]]
*** [[#Modules_by_category_Denoising|Denoising]]
+
*** [[#Modules_by_category_Diffusion_Denoising|Denoising]]
*** [[#Modules_by_category_Diffusion_Data_Conversion|Diffusion Data Conversion]]
+
*** [[#Modules_by_category_Diffusion_Diffusion_Data_Conversion|Diffusion Data Conversion]]
** [[#Modules_by_category_Filtering|Filtering]]
+
** [[#Modules_by_category_Legacy_Filtering|Filtering]]
** [[#Modules_by_category_Registration|Registration]]
+
** [[#Modules_by_category_Legacy_Registration|Registration]]
** [[#Modules_by_category_Work_in_Progress|Work in Progress]]
+
** [[#Modules_by_category_Legacy_Work_in_Progress|Work in Progress]]
*** [[#Modules_by_category_Diffusion_Tensor|Diffusion Tensor]]
+
*** [[#Modules_by_category_Work_in_Progress_Diffusion_Tensor|Diffusion Tensor]]
**** [[#Modules_by_category_Test|Test]]
+
**** [[#Modules_by_category_Diffusion_Tensor_Test|Test]]
 
* [[#Modules_by_category_Mesh_Generation|Mesh Generation]]
 
* [[#Modules_by_category_Mesh_Generation|Mesh Generation]]
 
* [[#Modules_by_category_MeshGeneration|Mesh Generation]]
 
* [[#Modules_by_category_MeshGeneration|Mesh Generation]]
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* [[#Modules_by_category_Perk_Tutor|Perk Tutor]]
 
* [[#Modules_by_category_Perk_Tutor|Perk Tutor]]
 
* [[#Modules_by_category_Plastimatch|Plastimatch]]
 
* [[#Modules_by_category_Plastimatch|Plastimatch]]
** [[#Modules_by_category_Registration|Registration]]
+
** [[#Modules_by_category_Plastimatch_Registration|Registration]]
** [[#Modules_by_category_Utilities|Utilities]]
+
** [[#Modules_by_category_Plastimatch_Utilities|Utilities]]
 
* [[#Modules_by_category_Quantification|Quantification]]
 
* [[#Modules_by_category_Quantification|Quantification]]
** [[#Modules_by_category_ChangeQuantification|Change Quantification]]
+
** [[#Modules_by_category_Quantification_ChangeQuantification|Change Quantification]]
 
* [[#Modules_by_category_Radiotherapy|Radiotherapy]]
 
* [[#Modules_by_category_Radiotherapy|Radiotherapy]]
 
* [[#Modules_by_category_Registration|Registration]]
 
* [[#Modules_by_category_Registration|Registration]]
** [[#Modules_by_category_Label_Registration|Label Registration]]
+
** [[#Modules_by_category_Registration_Label_Registration|Label Registration]]
** [[#Modules_by_category_Specialized|Specialized]]
+
** [[#Modules_by_category_Registration_Specialized|Specialized]]
 
* [[#Modules_by_category_Segmentation|Segmentation]]
 
* [[#Modules_by_category_Segmentation|Segmentation]]
** [[#Modules_by_category_Specialized|Specialized]]
+
** [[#Modules_by_category_Segmentation_Specialized|Specialized]]
 
* [[#Modules_by_category_Sequences|Sequences]]
 
* [[#Modules_by_category_Sequences|Sequences]]
 
* [[#Modules_by_category_Shape_Analysis|Shape Analysis]]
 
* [[#Modules_by_category_Shape_Analysis|Shape Analysis]]
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* [[#Modules_by_category_Surface_Models|Surface Models]]
 
* [[#Modules_by_category_Surface_Models|Surface Models]]
 
* [[#Modules_by_category_Testing|Testing]]
 
* [[#Modules_by_category_Testing|Testing]]
** [[#Modules_by_category_IGT_Tests|IGT Tests]]
+
** [[#Modules_by_category_Testing_IGT_Tests|IGT Tests]]
** [[#Modules_by_category_TestCases|Test Cases]]
+
** [[#Modules_by_category_Testing_TestCases|Test Cases]]
 
* [[#Modules_by_category_Unspecified|Unspecified]]
 
* [[#Modules_by_category_Unspecified|Unspecified]]
 
* [[#Modules_by_category_Utilities|Utilities]]
 
* [[#Modules_by_category_Utilities|Utilities]]
** [[#Modules_by_category_BRAINS|BRAINS]]
+
** [[#Modules_by_category_Utilities_BRAINS|BRAINS]]
 
* [[#Modules_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
 
* [[#Modules_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
 
* [[#Modules_by_category_Wizards|Wizards]]
 
* [[#Modules_by_category_Wizards|Wizards]]
 
* [[#Modules_by_category_Work_in_Progress|Work in Progress]]
 
* [[#Modules_by_category_Work_in_Progress|Work in Progress]]
** [[#Modules_by_category_Converters|Converters]]
+
** [[#Modules_by_category_Work_in_Progress_Converters|Converters]]
** [[#Modules_by_category_Informatics|Informatics]]
+
** [[#Modules_by_category_Work_in_Progress_Informatics|Informatics]]
*** [[#Modules_by_category_TestCases|Test Cases]]
+
*** [[#Modules_by_category_Informatics_TestCases|Test Cases]]
 
* [[#Modules_by_category_XNATSlicer|XNATSlicer]]
 
* [[#Modules_by_category_XNATSlicer|XNATSlicer]]
 +
<span id='Modules_by_category_BRAINS'></span>
 
== BRAINS ==
 
== BRAINS ==
 +
<span id='Modules_by_category_BRAINS_LabelStatistics'></span>
 
=== LabelStatistics ===
 
=== LabelStatistics ===
 
* BRAINSLabel Stats    <small>(cli, built-in)</small>
 
* BRAINSLabel Stats    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Cardiac_MRI_Toolkit'></span>
 
== Cardiac MRI Toolkit ==
 
== Cardiac MRI Toolkit ==
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
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* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit LASegmentation Graph Cuts]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit LASegmentation Graph Cuts]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 +
<span id='Modules_by_category_CMF_Registration'></span>
 
== CMF Registration ==
 
== CMF Registration ==
 
* [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
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* [[Documentation/Nightly/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
<span id='Modules_by_category_CMF_Registration_Voxelbase_Registration'></span>
 
=== Voxelbase Registration ===
 
=== Voxelbase Registration ===
 
* [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
<span id='Modules_by_category_Converters'></span>
 
== Converters ==
 
== Converters ==
 
* [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
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* [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|Quad Edge Surface Mesher]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
 
* [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|Quad Edge Surface Mesher]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
 
* [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOMSeries]]    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Developer_Tools'></span>
 
== Developer Tools ==
 
== Developer Tools ==
 
* [[Documentation/Nightly/Modules/EventBroker|Event Broker]]
 
* [[Documentation/Nightly/Modules/EventBroker|Event Broker]]
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* [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]] extension)</small>
 
* [[Documentation/Nightly/Modules/ImageMaker|Image Maker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]] extension)</small>
 +
<span id='Modules_by_category_Developer_Tools_DICOM_Plugins'></span>
 
=== DICOM Plugins ===
 
=== DICOM Plugins ===
 
* DICOMLongitudinal PETCTPlugin
 
* DICOMLongitudinal PETCTPlugin
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* DICOMScalar Volume Plugin
 
* DICOMScalar Volume Plugin
 
* DICOMSlicer Data Bundle Plugin
 
* DICOMSlicer Data Bundle Plugin
 +
<span id='Modules_by_category_Developer_Tools_Editor_Extensions'></span>
 
=== Editor Extensions ===
 
=== Editor Extensions ===
 
* [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]    <small>(scripted, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/4.3/Modules/FastGrowCut|Fast Grow Cut Effect]]    <small>(scripted, bundled in [[Documentation/4.3/Modules/FastGrowCut|Fast Grow Cut Effect]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice Effect]    <small>(scripted, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|Double Threshold Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 
* [[Documentation/Nightly/Modules/PETTumorSegmentationEffect|PETTumor Segmentation Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 +
<span id='Modules_by_category_Developer_Tools_Matlab'></span>
 
=== Matlab ===
 
=== Matlab ===
 
* [[Documentation/Nightly/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 
* [[Documentation/Nightly/Modules/MatlabCommander|Matlab Commander]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 
* [[Documentation/Nightly/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 
* [[Documentation/Nightly/Modules/MatlabModuleGenerator|Matlab Module Generator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] extension)</small>
 +
<span id='Modules_by_category_Diffusion'></span>
 
== Diffusion ==
 
== Diffusion ==
 
* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
 
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
 +
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 
=== Diffusion Data Conversion ===
 
=== Diffusion Data Conversion ===
 
* DWIConvert    <small>(cli, built-in)</small>
 
* DWIConvert    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Diffusion_Diffusion_Tensor_Images'></span>
 
=== Diffusion Tensor Images ===
 
=== Diffusion Tensor Images ===
 
* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
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* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 +
<span id='Modules_by_category_Diffusion_Diffusion_Weighted_Images'></span>
 
=== Diffusion Weighted Images ===
 
=== Diffusion Weighted Images ===
 
* [[Documentation/Nightly/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
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* [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
* [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
 
* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Diffusion_FiberAnalysis'></span>
 
=== FiberAnalysis ===
 
=== FiberAnalysis ===
 
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
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* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 +
<span id='Modules_by_category_Diffusion_Tractography'></span>
 
=== Tractography ===
 
=== Tractography ===
 
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
 
* Fiber Tract Measurements    <small>(cli, built-in)</small>
 
* Fiber Tract Measurements    <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Editor_Effects'></span>
 
== Editor Effects ==
 
== Editor Effects ==
 
* [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
 
* [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
 +
<span id='Modules_by_category_EditorEffect'></span>
 
== EditorEffect ==
 
== EditorEffect ==
 
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 +
<span id='Modules_by_category_Endoscopy'></span>
 
== Endoscopy ==
 
== Endoscopy ==
 
* [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
 +
<span id='Modules_by_category_Examples'></span>
 
== Examples ==
 
== Examples ==
* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] extension)</small>
+
* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [[Documentation/4.3/Modules/FastGrowCut|Fast Grow Cut Effect]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Fast Grow Cut Segmenter]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]    <small>(loadable, bundled in [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] extension)</small>
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small>
 +
<span id='Modules_by_category_Exporter'></span>
 
== Exporter ==
 
== Exporter ==
 
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
 
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
 +
<span id='Modules_by_category_Filtering'></span>
 
== Filtering ==
 
== Filtering ==
 
* [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
Line 185: Line 207:
 
* [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]]    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Filtering_Arithmetic'></span>
 
=== Arithmetic ===
 
=== Arithmetic ===
 
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
Line 191: Line 214:
 
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Filtering_Denoising'></span>
 
=== Denoising ===
 
=== Denoising ===
 
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
Line 196: Line 220:
 
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Filtering_Morphology'></span>
 
=== Morphology ===
 
=== Morphology ===
 
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_IGT'></span>
 
== IGT ==
 
== IGT ==
 
* [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] extension)</small>
Line 222: Line 248:
 
* [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 
* [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 
* [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
 +
<span id='Modules_by_category_Informatics'></span>
 
== Informatics ==
 
== Informatics ==
 
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Annotations|Annotations]]    <small>(loadable, built-in)</small>
Line 233: Line 260:
 
* [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 +
<span id='Modules_by_category_Legacy'></span>
 
== Legacy ==
 
== Legacy ==
 +
<span id='Modules_by_category_Legacy_Converters'></span>
 
=== Converters ===
 
=== Converters ===
 
* [[Documentation/Nightly/Modules/BSplineToDeformationField|BSpline To Deformation Field]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BSplineToDeformationField|BSpline To Deformation Field]]    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Legacy_Diffusion'></span>
 
=== Diffusion ===
 
=== Diffusion ===
 +
<span id='Modules_by_category_Diffusion_Denoising'></span>
 
==== Denoising ====
 
==== Denoising ====
 
* [[Documentation/Nightly/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]]    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Diffusion_Diffusion_Data_Conversion'></span>
 
==== Diffusion Data Conversion ====
 
==== Diffusion Data Conversion ====
 
* DTIimport    <small>(cli, built-in)</small>
 
* DTIimport    <small>(cli, built-in)</small>
 
* DTIexport    <small>(cli, built-in)</small>
 
* DTIexport    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Legacy_Filtering'></span>
 
=== Filtering ===
 
=== Filtering ===
 
* [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]]    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Legacy_Registration'></span>
 
=== Registration ===
 
=== Registration ===
 
* Test Grid Transform Registration    <small>(cli, built-in)</small>
 
* Test Grid Transform Registration    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|Expert Automated Registration]]    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Legacy_Work_in_Progress'></span>
 
=== Work in Progress ===
 
=== Work in Progress ===
 +
<span id='Modules_by_category_Work_in_Progress_Diffusion_Tensor'></span>
 
==== Diffusion Tensor ====
 
==== Diffusion Tensor ====
 +
<span id='Modules_by_category_Diffusion_Tensor_Test'></span>
 
===== Test =====
 
===== Test =====
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
 
* Diffusion Tensor Test    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Mesh_Generation'></span>
 
== Mesh Generation ==
 
== Mesh Generation ==
 
* [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
 
* [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
 +
<span id='Modules_by_category_MeshGeneration'></span>
 
== MeshGeneration ==
 
== MeshGeneration ==
 
* [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 
* [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 
* [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 
* [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 +
<span id='Modules_by_category_Microscopy'></span>
 
== Microscopy ==
 
== Microscopy ==
 
* [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
Line 263: Line 303:
 
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 +
<span id='Modules_by_category_MultiVolume_Support'></span>
 
== MultiVolume Support ==
 
== MultiVolume Support ==
 
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]]    <small>(scripted, built-in)</small>
 +
<span id='Modules_by_category_Perk_Tutor'></span>
 
== Perk Tutor ==
 
== Perk Tutor ==
 
* [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
* [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
Line 271: Line 313:
 
* [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
* [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
* [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 
* [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 +
<span id='Modules_by_category_Plastimatch'></span>
 
== Plastimatch ==
 
== Plastimatch ==
 
* [[Documentation/Nightly/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/Nightly/Modules/DicomSroExport|Dicom Sro Export]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
<span id='Modules_by_category_Plastimatch_Registration'></span>
 
=== Registration ===
 
=== Registration ===
 
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
<span id='Modules_by_category_Plastimatch_Utilities'></span>
 
=== Utilities ===
 
=== Utilities ===
 
* [[Documentation/Nightly/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
<span id='Modules_by_category_Quantification'></span>
 
== Quantification ==
 
== Quantification ==
 
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] extension)</small>
+
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETDICOM|PETDICOMExtension]] extension)</small>
 
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
Line 294: Line 340:
 
* [[Documentation/Nightly/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/DataProbe|Data Probe]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 +
<span id='Modules_by_category_Quantification_ChangeQuantification'></span>
 
=== ChangeQuantification ===
 
=== ChangeQuantification ===
 
* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 
* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 +
<span id='Modules_by_category_Radiotherapy'></span>
 
== Radiotherapy ==
 
== Radiotherapy ==
 
* [[Documentation/Nightly/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerRT|Beams]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
Line 303: Line 351:
 
* [[Documentation/Nightly/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/Nightly/Modules/DicomSroImport|Dicom Sro Import]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
<span id='Modules_by_category_Registration'></span>
 
== Registration ==
 
== Registration ==
 
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]    <small>(cli, built-in)</small>
Line 310: Line 359:
 
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small>
 
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small>
 +
<span id='Modules_by_category_Registration_Label_Registration'></span>
 
=== Label Registration ===
 
=== Label Registration ===
 
* [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|Distance Map Based Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
 
* [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|Distance Map Based Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
 +
<span id='Modules_by_category_Registration_Specialized'></span>
 
=== Specialized ===
 
=== Specialized ===
 
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]    <small>(cli, built-in)</small>
Line 318: Line 369:
 
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 +
<span id='Modules_by_category_Segmentation'></span>
 
== Segmentation ==
 
== Segmentation ==
* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
 
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
 
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
 
* EMSegment Quick    <small>(loadable, built-in)</small>
Line 326: Line 378:
 
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
 
* [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation CLI]    <small>(cli, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation] extension)</small>
+
* [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
 
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 
* [[Documentation/Nightly/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 
* [[Documentation/Nightly/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
Line 333: Line 385:
 
* [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 
* [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 
* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
 +
<span id='Modules_by_category_Segmentation_Specialized'></span>
 
=== Specialized ===
 
=== Specialized ===
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* EMSegment Command Line    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 
* BRAINSROIAuto    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Sequences'></span>
 
== Sequences ==
 
== Sequences ==
 
* [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 +
<span id='Modules_by_category_Shape_Analysis'></span>
 
== Shape Analysis ==
 
== Shape Analysis ==
 
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 +
<span id='Modules_by_category_Slicelets'></span>
 
== Slicelets ==
 
== Slicelets ==
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo]    <small>(loadable, bundled in [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] extension)</small>
+
* [[Documentation/Nightly/Modules/GelDosimetry|Gel Dosimetry Analysis Algo]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/GelDosimetry|Gel Dosimetry Analysis]] extension)</small>
 +
<span id='Modules_by_category_Surface_Models'></span>
 
== Surface Models ==
 
== Surface Models ==
 
* [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
Line 353: Line 410:
 
* [[Documentation/Nightly/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Testing'></span>
 
== Testing ==
 
== Testing ==
 
* Slicer MRBTest
 
* Slicer MRBTest
Line 361: Line 419:
 
* [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis Monitoring]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis Monitoring]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 
* Performance Tests
 
* Performance Tests
 +
<span id='Modules_by_category_Testing_IGT_Tests'></span>
 
=== IGT Tests ===
 
=== IGT Tests ===
 
* Watchdog Self Test
 
* Watchdog Self Test
 
* Breach Warning Self Test
 
* Breach Warning Self Test
 +
<span id='Modules_by_category_Testing_TestCases'></span>
 
=== TestCases ===
 
=== TestCases ===
 
* Slice Link Logic    <small>(scripted, built-in)</small>
 
* Slice Link Logic    <small>(scripted, built-in)</small>
Line 392: Line 452:
 
* Crop Volume Self Test
 
* Crop Volume Self Test
 
* label Toggle Bug2049
 
* label Toggle Bug2049
 +
<span id='Modules_by_category_Unspecified'></span>
 
== Unspecified ==
 
== Unspecified ==
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 
* BRAINSDWICleanup    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Utilities'></span>
 
== Utilities ==
 
== Utilities ==
 
* [[Documentation/Nightly/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
 
* [[Documentation/Nightly/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
Line 399: Line 461:
 
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
 
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
 
* [[Documentation/Nightly/Modules/DataStore|Data Store]]    <small>(loadable, built-in)</small>
 
* [[Documentation/Nightly/Modules/DataStore|Data Store]]    <small>(loadable, built-in)</small>
 +
<span id='Modules_by_category_Utilities_BRAINS'></span>
 
=== BRAINS ===
 
=== BRAINS ===
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 
* BRAINSTransform Convert    <small>(cli, built-in)</small>
 +
<span id='Modules_by_category_Vascular_Modeling_Toolkit'></span>
 
== Vascular Modeling Toolkit ==
 
== Vascular Modeling Toolkit ==
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 +
<span id='Modules_by_category_Wizards'></span>
 
== Wizards ==
 
== Wizards ==
 
* [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 
* [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 
* [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
 +
<span id='Modules_by_category_Work_in_Progress'></span>
 
== Work in Progress ==
 
== Work in Progress ==
 
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 +
<span id='Modules_by_category_Work_in_Progress_Converters'></span>
 
=== Converters ===
 
=== Converters ===
 
* [[Documentation/Nightly/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
 +
<span id='Modules_by_category_Work_in_Progress_Informatics'></span>
 
=== Informatics ===
 
=== Informatics ===
 
* [[Documentation/Nightly/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
 
* [[Documentation/Nightly/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
 +
<span id='Modules_by_category_Informatics_TestCases'></span>
 
==== TestCases ====
 
==== TestCases ====
 
* Reporting Self Test
 
* Reporting Self Test
 
* Label To DICOMSEGConverter Self Test
 
* Label To DICOMSEGConverter Self Test
 +
<span id='Modules_by_category_XNATSlicer'></span>
 
== XNATSlicer ==
 
== XNATSlicer ==
 
* [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
 
* [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>
= Extensions by category =
+
= Modules by name =
25 categories:
+
212 modules:
* [[#Extensions_by_category_Cardiac|Cardiac]]
+
* [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]]   <small>(cli, built-in)</small>
* [[#Extensions_by_category_Cardiac_MRI_toolkit|Cardiac MRI toolkit]]
+
* [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]]   <small>(cli, built-in)</small>
* [[#Extensions_by_category_Converters|Converters]]
+
* [[Documentation/Nightly/Modules/AirwaySegmentation|Airway Segmentation]]   <small>(scripted, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
* [[#Extensions_by_category_Developer_Tools|Developer Tools]]
+
* [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation CLI]]   <small>(cli, bundled in [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation]] extension)</small>
* [[#Extensions_by_category_Diffusion|Diffusion]]
+
* [[Documentation/Nightly/Modules/Annotations|Annotations]]   <small>(loadable, built-in)</small>
* [[#Extensions_by_category_Editor_Effects|Editor Effects]]
+
* [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]]   <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
* [[#Extensions_by_category_Exporter|Exporter]]
+
* [[Documentation/Nightly/Extensions/SlicerRT|Beams]]   <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[#Extensions_by_category_IGT|IGT]]
+
* [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]]   <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
* [[#Extensions_by_category_Informatics|Informatics]]
+
* [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]]   <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
* [[#Extensions_by_category_Mesh_Generation|Mesh Generation]]
+
* [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]]   <small>(cli, built-in)</small>
* [[#Extensions_by_category_Microscopy|Microscopy]]
+
* BRAINSDWICleanup    <small>(cli, built-in)</small>
* [[#Extensions_by_category_Nuclear_Medicine|Nuclear Medicine]]
+
* [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]]   <small>(cli, built-in)</small>
* [[#Extensions_by_category_Quantification|Quantification]]
+
* BRAINSLabel Stats    <small>(cli, built-in)</small>
* [[#Extensions_by_category_Radiotherapy|Radiotherapy]]
+
* [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]]   <small>(cli, built-in)</small>
* [[#Extensions_by_category_Registration|Registration]]
+
* BRAINSResize    <small>(cli, built-in)</small>
* [[#Extensions_by_category_Remote|Remote]]
+
* BRAINSROIAuto    <small>(cli, built-in)</small>
* [[#Extensions_by_category_Scoliosis|Scoliosis]]
+
* BRAINSStrip Rotation    <small>(cli, built-in)</small>
* [[#Extensions_by_category_Segmentation|Segmentation]]
+
* BRAINSTransform Convert    <small>(cli, built-in)</small>
* [[#Extensions_by_category_Sequences|Sequences]]
+
* [[Documentation/Nightly/Extensions/SlicerIGT|Breach Warning]]   <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[#Extensions_by_category_Shape_Analysis|Shape Analysis]]
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small>
* [[#Extensions_by_category_Tractography|Tractography]]
+
* [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]]    <small>(cli, built-in)</small>
* [[#Extensions_by_category_Training|Training]]
+
* [http://slicer.vmtk.org/ Centerline Computation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
* [[#Extensions_by_category_Utilities|Utilities]]
+
* [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]]   <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* [[#Extensions_by_category_Vascular_Modeling_Toolkit|Vascular Modeling Toolkit]]
+
* [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]]   <small>(cli, built-in)</small>
* [[#Extensions_by_category_Wizards|Wizards]]
+
* [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver CLI]]   <small>(cli, bundled in [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] extension)</small>
== Cardiac ==
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Automatic Left Atrial Scar]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Axial Dilate]    <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
== Cardiac MRI toolkit ==
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Boolean REMOVEFilter]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Connected Threshold Filter]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
== Converters ==
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Inhomogeneity Correction]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Isolated Connected Filter]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
== Developer Tools ==
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit LASegmentation Graph Cuts]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit PVAntrum Cut]   <small>(cli, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/Nightly/Extensions/DeveloperToolsForExtensions|Developer Tools For Extensions]]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/Nightly/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Registration BRAINSFit]   <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
* [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]]
+
* [http://capulet.med.utah.edu/namic/cmrslicer/ CMRToolkit Wizard]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
== Diffusion ==
+
* [[Documentation/Nightly/Modules/CollectFiducials|Collect Fiducials]]   <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]
+
* [[Documentation/Nightly/Modules/Colors|Colors]]   <small>(loadable, built-in)</small>
== Editor Effects ==
+
* [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]]   <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]
+
* [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]]   <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] extension)</small>
== Exporter ==
+
* [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOMSeries]]   <small>(cli, built-in)</small>
* [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]
+
* [[Documentation/Nightly/Extensions/SlicerIGT|Create Models]]   <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
== IGT ==
+
* [[Documentation/Nightly/Modules/CropVolume|Crop Volume]]    <small>(loadable, built-in)</small>
* [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]]
+
* [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]]   <small>(cli, built-in)</small>
* [[Documentation/Nightly/Extensions/PortPlacement|Port Placement]]
+
* [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]]   <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] extension)</small>
* [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]]
+
* [[Documentation/Nightly/Modules/Data|Data]]   <small>(loadable, built-in)</small>
* [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]]
+
* [[Documentation/Nightly/Modules/DataProbe|Data Probe]]   <small>(scripted, built-in)</small>
* [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]]
+
* [[Documentation/Nightly/Modules/DataStore|Data Store]]   <small>(loadable, built-in)</small>
* [[Documentation/Nightly/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]]
+
* [[Documentation/Nightly/Modules/DiceComputation|Dice Computation]]   <small>(loadable, bundled in [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]] extension)</small>
* [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]
+
* [[Documentation/Nightly/Modules/DICOM|DICOM]]   <small>(scripted, built-in)</small>
* [[Documentation/Nightly/Extensions/TrackerStabilizer|Tracker Stabilizer]]
+
* DICOM2Full Brain Tractography    <small>(scripted, built-in)</small>
* [[Documentation/Nightly/Extensions/iGyne|i Gyne]]
+
* [[Documentation/Nightly/Modules/DicomSroExport|Dicom Sro Export]]   <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/Nightly/Extensions/ResectionPlanner|Resection Planner]]
+
* [[Documentation/Nightly/Modules/DicomSroImport|Dicom Sro Import]]   <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
== Informatics ==
+
* [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]]    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Extensions/Reporting|Reporting]]
+
* [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]]   <small>(cli, built-in)</small>
* [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]]
+
* [[Documentation/Nightly/Modules/DistanceMapBasedRegistration|Distance Map Based Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]
+
* [[Documentation/Nightly/Modules/DoseAccumulation|Dose Accumulation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]]
+
* [[Documentation/Nightly/Modules/Downsize|Downsize]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]
+
* [[Documentation/Nightly/Modules/dPetBrainQuantification|d Pet Brain Quantification]]    <small>(scripted, bundled in [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis] extension)</small>
== Mesh Generation ==
+
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]]
+
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|dtitractstat]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]]
+
* [[Documentation/Nightly/Extensions/SlicerRT|Dvh Comparison]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
== Microscopy ==
+
* DWIConvert    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Extensions/IASEM|IASEM]]
+
* [[Documentation/Nightly/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]]    <small>(cli, built-in)</small>
== Nuclear Medicine ==
+
* [[Documentation/Nightly/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]]    <small>(cli, built-in)</small>
* [http://gti-fing.github.io/SlicerPetSpectAnalysis Pet Spect Analysis]
+
* [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]]    <small>(cli, built-in)</small>
== Quantification ==
+
* [[Documentation/Nightly/Modules/Editor|Editor]]    <small>(scripted, built-in)</small>
* [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]]
+
* [[Documentation/Nightly/Modules/EMSegment|EMSegment]]    <small>(loadable, built-in)</small>
* [[Documentation/Nightly/Extensions/T1_Mapping|T1 Mapping]]
+
* EMSegment Command Line    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]]
+
* EMSegment Quick    <small>(loadable, built-in)</small>
* [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]]
+
* EMSegment Transform To New Format    <small>(cli, built-in)</small>
== Radiotherapy ==
+
* [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]]    <small>(scripted, built-in)</small>
* [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]]
+
* [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]]    <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis]
+
* [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]]    <small>(loadable, bundled in [[Documentation/4.3/Modules/FastGrowCut|Fast Grow Cut Effect]] extension)</small>
== Registration ==
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Fast Grow Cut Segmenter]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small>
* [[Documentation/Nightly/Extensions/CMFreg|CMFreg]]
+
* Fiber Bundle Label Select    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]
+
* [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]]    <small>(scripted, built-in)</small>
== Remote ==
+
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Fiber Compare]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
* [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]]
+
* Fiber Tract Measurements    <small>(cli, built-in)</small>
== Scoliosis ==
+
* [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]]    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]]
+
* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducial Registration Wizard]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
== Segmentation ==
+
* [[Documentation/Nightly/Extensions/SlicerIGT|Fiducials To Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
* [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]]
+
* [[Documentation/Nightly/Modules/FinslerBacktracing|Finsler Backtracing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]]
+
* [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] extension)</small>
* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice]
+
* [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]]    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]]
+
* [[Documentation/Nightly/Modules/GelDosimetry|Gel Dosimetry Analysis Algo]]    <small>(loadable, bundled in [[Documentation/Nightly/Modules/GelDosimetry|Gel Dosimetry Analysis]] extension)</small>
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]
+
* [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]]    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]]
+
* [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]]    <small>(cli, built-in)</small>
* [https://github.com/Tomnl/Slicer-Wasp Wasp]
+
* [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]]    <small>(cli, built-in)</small>
* [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/AirwaySegmentation Airway Segmentation]
+
* [[Documentation/Nightly/Modules/GrayscaleModelMaker|Grayscale Model Maker]]    <small>(cli, built-in)</small>
* [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]]
+
* [[Documentation/Nightly/Modules/Growing|Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
* [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect]
+
* [[Documentation/Nightly/Modules/GyroGuide|Gyro Guide]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]] extension)</small>
* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]
+
* [[Documentation/Nightly/Modules/HeterogeneityCAD|Heterogeneity CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]]
+
* [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]]    <small>(cli, built-in)</small>
== Sequences ==
+
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
* [[Documentation/Nightly/Extensions/Sequences|Sequences]]
+
* [[Documentation/Nightly/Extensions/IASEM|IASEMImport Series]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
== Shape Analysis ==
+
* [[Documentation/Nightly/Extensions/iGyne|i Gyne]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/iGyne|i Gyne]] extension)</small>
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]
+
* [[Documentation/Nightly/Modules/ImageLabelCombine|Image Label Combine]]    <small>(cli, built-in)</small>
== Tractography ==
+
* [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] extension)</small>
* [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]]
+
* [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] extension)</small>
== Training ==
+
* [[Documentation/Nightly/Modules/Isodose|Isodose]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
* [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]]
+
* [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|KUtil]]    <small>(scripted, bundled in [[Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter|Carrera Slice]] extension)</small>
== Utilities ==
+
* [[Documentation/Nightly/Modules/LabelAddition|Label Addition]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
* [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]]
+
* [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
== Vascular Modeling Toolkit ==
+
* [[Documentation/Nightly/Modules/LabelMapSmoothing|Label Map Smoothing]]    <small>(cli, built-in)</small>
* [http://slicer.vmtk.org/ VMTK]
+
* [[Documentation/Nightly/Extensions/IASEM|Label Object Statistics]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
== Wizards ==
+
* [[Documentation/Nightly/Modules/LabelStatistics|Label Statistics]]    <small>(scripted, built-in)</small>
* [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]]
+
* [[Documentation/Nightly/Extensions/Reporting|Label To DICOMSEGConverter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
 +
* [[Documentation/Nightly/Modules/LandmarkRegistration|Landmark Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] extension)</small>
 +
* [[Documentation/Nightly/Modules/LASegmentationWorkflow|LASegmentation Workflow]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 +
* [http://slicer.vmtk.org/ Level Set Segmentation]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 +
* [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Markups|Markups]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerIGT|Markups To Model]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/MedianImageFilter|Median Image Filter]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/MergeModels|Merge Models]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|Merge Stat With Fiber]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] extension)</small>
 +
* [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/MeshToLabelMap|Mesh To Label Map]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/Sequences|Metafile Importer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ModelMaker|Model Maker]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerIGT|Model Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Models|Models]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] extension)</small>
 +
* [[Documentation/Nightly/Modules/NonGrowing|Non Growing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/OpenIGTLinkIF|Open IGTLink IF]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/OpenIGTLinkRemote|Open IGTLink Remote]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/PathExplorer|Path Explorer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/PBNRR|PBNRR]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] extension)</small>
 +
* Perform Metric Test    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/PET-IndiC|PETIndi C]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 +
* [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImage Maker]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PETTumorSegmentation|PETTumor Segmentation]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerIGT|Pivot Calibration]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/PkModeling|Pk Modeling]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerRT|Planar Image]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer bspline]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerRT|plastimatch slicer landwarp]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerRT|Plastimatch Py]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerRT|Plm Register]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/PlusRemote|Plus Remote]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 +
* [[Documentation/Nightly/Modules/QuadEdgeSurfaceMesher|Quad Edge Surface Mesher]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
 +
* [[Documentation/Nightly/Modules/QuantitativeIndicesCLI|Quantitative Indices CLI]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 +
* [[Documentation/Nightly/Modules/QuantitativeIndicesTool|Quantitative Indices Tool]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/PET-IndiC|PET-Indi C]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Reformat|Reformat]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/Reporting|Reporting]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Reporting|Reporting]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SampleData|Sample Data]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Modules/ScarVisualization|Scar Visualization]]    <small>(scripted, bundled in [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] extension)</small>
 +
* [[Documentation/Nightly/Modules/SceneViews|Scene Views]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SegmentationSmoothing|Segmentation Smoothing]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SlicerProstate|Slicer Prostate]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SegmentCAD|Segment CAD]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/Sequences|Sequence Browser]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/Sequences|Sequences]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/Sequences|Sequences]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SkullStripper|Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SobolevSegmenter|Sobolev Segmenter]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/IASEM|Spacing Aware Curvature Diffusion]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/IASEM|IASEM]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/CMFreg|Surface Registration]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]]    <small>(scripted, built-in)</small>
 +
* [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/PETDICOM|PETDICOMExtension]] extension)</small>
 +
* [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]]    <small>(cli, bundled in [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] extension)</small>
 +
* [[Documentation/Nightly/Modules/T1_Mapping|T1 Mapping]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/T1_Mapping|T1 Mapping]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ThingiverseBrowser|Thingiverse Browser]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/TrackerStabilizer|Tracker Stabilizer]] extension)</small>
 +
* [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]]    <small>(loadable, built-in)</small>
 +
* Tractography Interactive Seeding    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]]    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerIGT|Transform Fusion]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Transforms|Transforms]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerIGT|Ultrasound Snapshots]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Units|Units]]    <small>(loadable, built-in)</small>
 +
* VBRAINSDemon Warp    <small>(cli, built-in)</small>
 +
* [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]]    <small>(scripted, built-in)</small>
 +
* [http://slicer.vmtk.org/ Vesselness Filtering]    <small>(scripted, bundled in [http://slicer.vmtk.org/ VMTK] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerRT|Vff File Reader]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/ViewControllers|View Controllers]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Model]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] extension)</small>
 +
* [[Documentation/Nightly/Modules/VolumeRendering|Volume Rendering]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/VolumeResliceDriver|Volume Reslice Driver]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Volumes|Volumes]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]]    <small>(cli, built-in)</small>
 +
* [https://github.com/Tomnl/Slicer-Wasp Wasp]    <small>(scripted, bundled in [https://github.com/Tomnl/Slicer-Wasp Wasp] extension)</small>
 +
* [[Documentation/Nightly/Extensions/SlicerIGT|Watchdog]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] extension)</small>
 +
* [[Documentation/Nightly/Modules/Welcome|Welcome]]    <small>(loadable, built-in)</small>
 +
* [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] extension)</small>
 +
* [[Documentation/Nightly/Modules/WorkflowSegmentation|Workflow Segmentation]]    <small>(loadable, bundled in [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] extension)</small>
 +
* [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]]    <small>(scripted, bundled in [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] extension)</small>

Latest revision as of 02:40, 27 November 2019



List of extensions known to be broken

Modules by category

36 categories:

BRAINS

LabelStatistics

  • BRAINSLabel Stats (cli, built-in)

Cardiac MRI Toolkit

CMF Registration

Voxelbase Registration

Converters

Developer Tools

DICOM Plugins

  • DICOMLongitudinal PETCTPlugin
  • DICOMRWVMPlugin
  • Multi Volume Importer Plugin
  • DICOMPETSUVPlugin
  • DICOMDiffusion Volume Plugin
  • Dicom Rt Import Export Plugin
  • DICOMSegmentation Plugin
  • Dicom Sro Import Plugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin

Editor Extensions

Matlab

Diffusion

Diffusion Data Conversion

  • DWIConvert (cli, built-in)

Diffusion Tensor Images

Diffusion Weighted Images

FiberAnalysis

Tractography

  • Fiber Bundle To Label Map (scripted, built-in)
  • Fiber Tract Measurements (cli, built-in)
  • Fiber Bundle Label Select (cli, built-in)

Editor Effects

EditorEffect

Endoscopy

Examples

Exporter

Filtering

Arithmetic

Denoising

Morphology

IGT

Informatics

Legacy

Converters

Diffusion

Denoising

Diffusion Data Conversion

  • DTIimport (cli, built-in)
  • DTIexport (cli, built-in)

Filtering

Registration

Work in Progress

Diffusion Tensor

Test
  • Diffusion Tensor Test (cli, built-in)

Mesh Generation

MeshGeneration

Microscopy

MultiVolume Support

Perk Tutor

Plastimatch

Registration

Utilities

Quantification

ChangeQuantification

Radiotherapy

Registration

Label Registration

Specialized

Segmentation

Specialized

Sequences

Shape Analysis

Slicelets

Surface Models

Testing

  • Slicer MRBTest
  • Self Tests
  • CLIROITest (cli, built-in)
  • CLI4Test
  • Threshold Threading Test
  • Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
  • Performance Tests

IGT Tests

  • Watchdog Self Test
  • Breach Warning Self Test

TestCases

  • Slice Link Logic (scripted, built-in)
  • Atlas Tests
  • RSNAQuant Tutorial
  • Volume Rendering Scene Close (scripted, built-in)
  • test tractography display
  • slicer Close Crash Bug2590
  • Subject Hierarchy Generic Self Test
  • Charting (scripted, built-in)
  • Scene Performance (scripted, built-in)
  • Neurosurgical Planning Tutorial Markups Self Test
  • Markups In Compare Viewers Self Test
  • Cardiac Agatston Measures (scripted, bundled in Cardiac Agaston Measures extension)
  • fiber visibility crash2438
  • scene Import2428
  • RSNAVis Tutorial
  • JRC2013Vis
  • RSNA2012Prostate Demo
  • Add Many Markups Fiducial Test
  • Colors Scalar Bar Self Test
  • Markups In Views Self Test
  • View Controllers Slice Interpolation Bug1926
  • Change Tracker Self Test
  • Fiducial Layout Switch Bug1914
  • Subject Hierarchy Core Plugins Self Test
  • Slicer4Minute (scripted, built-in)
  • Crop Volume Self Test
  • label Toggle Bug2049

Unspecified

  • BRAINSDWICleanup (cli, built-in)

Utilities

BRAINS

  • BRAINSTransform Convert (cli, built-in)

Vascular Modeling Toolkit

Wizards

Work in Progress

Converters

Informatics

TestCases

  • Reporting Self Test
  • Label To DICOMSEGConverter Self Test

XNATSlicer

Modules by name

212 modules: