User:UpdateBot/Issue-2843-Consolidated-Extension-List

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Revision as of 08:12, 5 December 2014 by UpdateBot (talk | contribs) (This page has been updated based on the list of extension description files available on the ExtensionsIndex)
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Modules by name

156 modules:

Modules by name

156 modules:

Modules by category

30 categories:

BRAINS

LabelStatistics

  • BRAINSLabelStats

CMF Registration

  • ApplyMatrix
  • LandmarkRegistration
  • SurfaceRegistration
  • LabelExtraction
  • LabelAddition
  • Downsize

Voxelbase Registration

  • Growing
  • MaskCreation
  • NonGrowing

Converters

  • VectorToScalarVolume
  • CropVolume
  • CreateDICOMSeries
  • OrientScalarVolume

Developer Tools

  • EventBroker
  • DoubleArrays
  • PyDevRemoteDebug
  • Cameras
  • ExtensionWizard
  • ExecutionModelTour
  • ImageMaker

DICOM Plugins

  • DICOMRWVMPlugin
  • DICOMLongitudinalPETCTPlugin
  • MultiVolumeImporterPlugin
  • DICOMPETSUVPlugin
  • DICOMDiffusionVolumePlugin
  • DICOMSegmentationPlugin
  • DICOMScalarVolumePlugin
  • DICOMSlicerDataBundlePlugin

Editor Extensions

  • BinaryWatershedEffect
  • FastGrowCutEffect
  • CarreraSliceEffect
  • DoubleThresholdEffect

Matlab

  • MatlabModuleGenerator
  • MatlabCommander

Diffusion

  • TractographyDisplay
  • DICOM2FullBrainTractography

Diffusion Data Conversion

  • DWIConvert

Diffusion Tensor Images

  • ResampleDTIVolume
  • DiffusionTensorScalarMeasurements
  • TractographyLabelMapSeeding
  • TractographyInteractiveSeeding

Diffusion Weighted Images

  • DWIRicianLMMSEFilter
  • DWIJointRicianLMMSEFilter
  • DWIToDTIEstimation
  • FinslerBacktracing
  • ResampleScalarVectorDWIVolume
  • FinslerTractography
  • DiffusionWeightedVolumeMasking

Tractography

  • FiberBundleToLabelMap
  • FiberBundleLabelSelect

Editor Effects

  • WindowLevelEffect

Endoscopy

  • Endoscopy

Examples

  • CarreraSlice
  • FastGrowCut
  • FastGrowCutSegmenter
  • SegmentationAidedRegistration

Exporter

  • SlicerToKiwiExporter

Filtering

  • ExtractSkeleton
  • ThresholdScalarVolume
  • N4ITKBiasFieldCorrection
  • SimpleFilters
  • ImageLabelCombine
  • VotingBinaryHoleFillingImageFilter
  • HistogramMatching
  • CheckerBoardFilter

Arithmetic

  • MultiplyScalarVolumes
  • AddScalarVolumes
  • CastScalarVolume
  • SubtractScalarVolumes
  • MaskScalarVolume

Denoising

  • GradientAnisotropicDiffusion
  • MedianImageFilter
  • GaussianBlurImageFilter
  • CurvatureAnisotropicDiffusion

Morphology

  • GrayscaleFillHoleImageFilter
  • ErodeLabel
  • DilateLabel
  • GrayscaleGrindPeakImageFilter

IGT

  • PercutaneousApproachAnalysis
  • PortPlacement
  • OpenIGTLinkIF
  • NeedleFinder
  • TrackerStabilizer
  • GyroGuide
  • iGyne
  • CornerAnnotation

Informatics

  • Annotations
  • Markups
  • Units
  • DICOM
  • SampleData
  • SubjectHierarchy
  • Data
  • Colors
  • CurveMaker
  • TCIABrowser

Legacy

Converters

  • BSplineToDeformationField

Diffusion

Denoising

  • DWIUnbiasedNonLocalMeansFilter

Diffusion Data Conversion

  • DTIimport
  • DTIexport

Filtering

  • OtsuThresholdImageFilter
  • ResampleScalarVolume

Registration

  • TestGridTransformRegistration
  • ExpertAutomatedRegistration

Work in Progress

Diffusion Tensor

Test
  • DiffusionTensorTest

Mesh Generation

  • CleaverCLI

MeshGeneration

  • BodyCentricCubicMesh
  • MeshCompression

Microscopy

  • BinShrink
  • LabelObjectStatistics
  • SpacingAwareCurvatureDiffusion
  • IASEMImportSeries
  • IASEMImport

Multidimensional data

  • MetafileImporter
  • SequenceBrowser
  • Sequences

MultiVolume Support

  • MultiVolumeExplorer
  • MultiVolumeImporter

Perk Tutor

  • PythonMetricsCalculator
  • WorkflowSegmentation
  • TransformRecorder
  • PerkEvaluator

Quantification

  • PETStandardUptakeValueComputation
  • SUVFactorCalculator
  • SpinalCurvatureMeasurement
  • PkModeling
  • LabelStatistics
  • PETSUVImageMaker
  • DiceComputation
  • DataProbe

ChangeQuantification

  • IntensityDifferenceMetric

Registration

  • BRAINSResample
  • Transforms
  • BRAINSResize
  • PerformMetricTest
  • BRAINSFit
  • PBNRR

Specialized

  • ACPCTransform
  • FiducialRegistration
  • VBRAINSDemonWarp
  • BRAINSDemonWarp
  • Reformat

Segmentation

  • Editor
  • EMSegmentQuick
  • SimpleRegionGrowingSegmentation
  • EMSegment
  • VolumeClipWithRoi
  • SwissSkullStripper
  • AirwaySegmentationCLI
  • LAScarSegmenter
  • SobolevSegmenter
  • VolumeClipWithModel
  • IGR3D_MABMIS_Testing
  • ABC
  • IGR3D_MABMIS_Training
  • IntensitySegmenter

Specialized

  • EMSegmentCommandLine
  • RobustStatisticsSegmenter
  • BRAINSROIAuto

Slicelets

  • GelDosimetryAnalysisAlgo

Surface Models

  • ModelToLabelMap
  • MergeModels
  • SurfaceToolbox
  • ProbeVolumeWithModel
  • GrayscaleModelMaker
  • LabelMapSmoothing
  • ModelMaker

Testing

  • SelfTests
  • CLIROITest
  • CLI4Test
  • ThresholdThreadingTest
  • ScoliosisMonitoring
  • PerformanceTests
  • SlicerMRBTest

TestCases

  • SliceLinkLogic
  • AtlasTests
  • RSNAQuantTutorial
  • VolumeRenderingSceneClose
  • test_tractography_display
  • SubjectHierarchyCorePluginsSelfTest
  • slicerCloseCrashBug2590
  • SubjectHierarchyGenericSelfTest
  • Charting
  • ScenePerformance
  • MarkupsInCompareViewersSelfTest
  • fiber_visibility_crash2438
  • sceneImport2428
  • RSNAVisTutorial
  • JRC2013Vis
  • RSNA2012ProstateDemo
  • AddManyMarkupsFiducialTest
  • NeurosurgicalPlanningTutorialMarkupsSelfTest
  • ColorsScalarBarSelfTest
  • MarkupsInViewsSelfTest
  • ChangeTrackerSelfTest
  • FiducialLayoutSwitchBug1914
  • ViewControllersSliceInterpolationBug1926
  • Slicer4Minute
  • labelToggleBug2049

Unspecified

  • BRAINSDWICleanup

Utilities

  • ThingiverseBrowser
  • EMSegmentTransformToNewFormat
  • DataStore

BRAINS

  • BRAINSTransformConvert

Wizards

  • CompareVolumes
  • ChangeTracker

Work in Progress

  • LongitudinalPETCT

Converters

  • LabelToDICOMSEGConverter

Informatics

  • Reporting

TestCases

  • ReportingSelfTest
  • LabelToDICOMSEGConverterSelfTest

XNATSlicer

  • XnatSlicer

Modules by contributing organization

62 contributing organizations:

Asclepios INRIA

AZE R&D

  • JRC2013Vis

Brigham and Women's Hospital

BWH

BWH, SPL

BWH, SUMS

BWH/UAB

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China

CRTC

gatech

GE

Georgia Institute of Technology

Georgia Tech

IBM

Isomics

Isomics Inc.

  • DICOMDiffusion Volume Plugin
  • DICOMLongitudinal PETCTPlugin
  • DICOMScalar Volume Plugin
  • DICOMSlicer Data Bundle Plugin
  • Slicer MRBTest
  • Threshold Threading Test

Isomics, Inc.

Isomics, pieper@isomics.com

Kitware

Kitware)

MGH

Moka Creative, LLC, kumar.sunil.p@gmail.com

MSC/NLM

Noware

Orobix

PerkLab at Queen's University

PerkLab, Queen's

PerkLab, Queen's University

PMH

Queen's

Queen's University

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

SAIC-Frederick, NCI-Frederick

SBU

SCI Institute

Shiga University of Medical Science, Japan, SPL

SNR

SPL

SPL B&W Harvard

SPL, BWH

SPL, BWH, UPenn

Stony Brook University

SUMS

Surgical Planning Lab

UAB

Uiowa

  • DWIConvert (cli, built-in)

UIowa

  • DWIConvert (cli, built-in)

UNC

Univ of Michigan

Univ. of Iowa

University College Cork

University of Alabama Birmingham

University of Heidelberg

University of Iowa

University of Iowa) and Andrey Fedorov (SPL

UPenn

Utah

UVa

UWA

WashU-St. Louis, dmarcus@wustl.edu

while at GE

Modules by contributing organization

62 contributing organizations:

Modules by contributing individual

148 contributing individuals:

Akila Viswanathan

Alan Morris

Alex Yarmakovich

  • Models (loadable, built-in)
  • Tractography Interactive Seeding (loadable, built-in)

Alex Yarmarkovich

Ali Ghayoor

  • BRAINSTransform Convert (cli, built-in)
  • Perform Metric Test (cli, built-in)

Alireza Mehrtash

Allen Tannenbaum

Analysis Laboratory

Andinet Enquobahrie

Andras Lasso

Andreas Freudling

Andrey Fedorov

Andriy Kot

Anonymous

  • CLIROITest (cli, built-in)
  • EMSegment Transform To New Format (cli, built-in)

Antonio Damato

Antonio Tristan Vega

Arie Nakhmani

Atsushi Yamada

Beatriz Paniagua from Department of Orthodontics

Benjamin Long

Bill Lorensen

Brad Davis

  • EMSegment Command Line (cli, built-in)

Bradley Lowekamp

BWH

  • DICOMSegmentation Plugin
  • Multi Volume Importer Plugin

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

Casey B Goodlett

Charles Marion

Csaba Pinter

Dan Marcus

Daniel Blezek

Daniel Haehn

Danny Perry

Demian Wassermann

Dinggang Shen

Dirk Padfield

Dominik Meier

Ethan Ulrich

ez

Fotis Drakopoulos

Francois Budin

Franklin King

Greg Gardner

Greg Harris

Guido Gerig

Guillaume Pernelle

Hans J. Johnson

  • BRAINSDemon Warp (cli, built-in)
  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)
  • BRAINSTransform Convert (cli, built-in)
  • VBRAINSDemon Warp (cli, built-in)

Hans Johnson

hans-johnson -at- uiowa.edu

  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)

http://www.psychiatry.uiowa.edu

  • BRAINSFit (cli, built-in)
  • BRAINSROIAuto (cli, built-in)

Ivan Kolesov

Jan Egger

Jayender Jagadeesan

Jean-Baptiste Berger

Jean-Christophe Fillion-Robin

Jim Miller

Johan Andruejol

  • Units (loadable, built-in)

John Evans

Jonathan Bronson

Josh Cates

Joy Matsui

  • DWIConvert (cli, built-in)

Julien Finet

Julien Jomier

Junichi Tokuda

Kent Williams

  • BRAINSDWICleanup (cli, built-in)
  • BRAINSTransform Convert (cli, built-in)
  • DWIConvert (cli, built-in)

Kevin Wang

Kilian Pohl

Koichiro Murakami

Lauren Barber

Lauren O'Donnell

Laurent Chauvin

Liang-Jia Zhu

Liangjia Zhu

Luca Antiga

Luis G. Torres

Luping Fang

Marc Niethammer

Marcel Prastawa prastawa@sci.utah.edu

  • ABC (cli, bundled in ABC extension)

Mark Scully

  • DWIConvert (cli, built-in)

Markus Van Tol

Martin Styner

Mason Winsauer

Matt Lougheed

Matthew Holden

Matthew S. Holden

Matthew Woehlke

Michael Jeulin-Lagarrigue

Minjeong Kim

Nabgha Fahrat

Neuro Image Resarch

Nicholas Herlambang

  • JRC2013Vis

Nick Tustison

Nicole Aucoin

Nigel Goh

Nikos Chrisochoides

Olivier Clatz

Pat Marion

Patricio Vela

Paul Mercea

Pengdong Xiao

Peter Black

Peter Karasev

Peter Savadjiev

Pierre Seroul

Pietro Nardelli

Polina Goll

  • EMSegment Command Line (cli, built-in)

Qing Pan

Raul San Jose

Rob MacLeod

Ron Kikinis

Ross Whitaker

Ruifeng Chen

S

Sam Song

Santiago Aja Fern

Sebastien Barré

Sebastien Barre

  • EMSegment Command Line (cli, built-in)

Shigeyuki Naka

Soichiro Tani

Sonia Pujol

Stephen Aylward

Stephen R Aylward

Steve Pieper

Sunil Kumar

Sylvain Bouix

Tamas Ungi

the University of North Carolina at Chapel Hill

Tina Kapur

Tobias Penzkofer

Tohru Tani

UNC Medical School

UofM School Of Dentistry

UofM School of Dentistry

Vince Magnotta

  • DWIConvert (cli, built-in)

Vincent A. Magnotta

  • BRAINSLabel Stats (cli, built-in)

Vincent Magnotta

Vinicius Boen

Wendy Plesniak

Xiaodong Tao

Xiaofeng Liu

Xiaojun Chen

y Wells

Yanling Liu

Yi Gao

Yinglin Lee

  • Test Grid Transform Registration (cli, built-in)

Yingxuan Zhu

Yixun Liu

Yong Zhang

Yumin Yuan

  • EMSegment Command Line (cli, built-in)

Modules by contributing individual

148 contributing individuals:

Modules by type

3 types:

cli

loadable

scripted

Modules by type

3 types:

Modules by extension

46 extensions:

ABC

  • ABC (cli, bundled in ABC extension)

AirwaySegmentation

builtin

CarreraSlice

CBC_3D_I2MConversion

ChangeTracker

CleaverExtension

CMFreg

CornerAnnotation

CurveMaker

DiceComputation

ErodeDilateLabel

FastGrowCutEffect

FinslerTractography

GelDosimetryAnalysis

GyroGuide

IASEM

iGyne

ImageMaker

IntensitySegmenter

LAScarSegmenter

LongitudinalPETCT

MABMIS

MatlabBridge

MultidimData

NeedleFinder

PBNRR

PercutaneousApproachAnalysis

PerkTutor

PETDICOMExtension

PkModeling

PortPlacement

PyDevRemoteDebug

Reporting

ResectionPlanner

Scoliosis

SegmentationAidedRegistration

SlicerToKiwiExporter

SobolevSegmenter

SwissSkullStripper

TCIABrowser

ThingiverseBrowser

TrackerStabilizer

VolumeClip

WindowLevelEffect

XNATSlicer

Modules by extension

46 extensions:

Extensions by name

67 extensions:

Extensions by name

67 extensions:

Extensions by category

26 categories:

Cardiac

  • CardiacAgastonMeasures

Cardiac MRI toolkit

  • Cardiac_MRI_Toolkit

Converters

  • PETDICOMExtension

Developer Tools

  • ImageMaker
  • PyDevRemoteDebug
  • MatlabBridge

Diffusion

  • DTIAtlasBuilder
  • DTIProcess
  • FiberViewerLight
  • DTIAtlasFiberAnalyzer
  • DTIPrep

Editor Effects

  • WindowLevelEffect

Exporter

  • SlicerToKiwiExporter

Filtering

Morphology

  • ErodeDilateLabel

IGT

  • PortPlacement
  • LightWeightRobotIGT
  • GyroGuide
  • CornerAnnotation
  • iGyne
  • SlicerIGT
  • PercutaneousApproachAnalysis
  • NeedleFinder
  • TrackerStabilizer
  • ResectionPlanner

Informatics

  • Reporting
  • LongitudinalPETCT
  • FacetedVisualizer
  • TCIABrowser
  • CurveMaker

Mesh Generation

  • CBC_3D_I2MConversion
  • CleaverExtension

Microscopy

  • IASEM

Multidimensional data

  • MultidimData

Quantification

  • DiceComputation
  • PkModeling

Radiotherapy

  • SlicerRT
  • GelDosimetryAnalysis

Registration

  • CMFreg
  • SegmentationAidedRegistration
  • PBNRR

Remote

  • XNATSlicer

Scoliosis

  • Scoliosis

Segmentation

  • OpenCAD
  • SwissSkullStripper
  • CarreraSlice
  • SkullStripper
  • AirwaySegmentation
  • houghTransformCLI
  • LAScarSegmenter
  • RSSExtension
  • ABC
  • MABMIS
  • SobolevSegmenter
  • LASegmenter
  • FastGrowCutEffect
  • IntensitySegmenter
  • VolumeClip

Shape Analysis

  • ModelToModelDistance
  • ShapePopulationViewer
  • SPHARM-PDM

Surface Models

  • ModelClip

Tractography

  • FinslerTractography
  • UKFTractography

Training

  • PerkTutor

Utilities

  • ThingiverseBrowser

Vascular Modeling Toolkit

  • SlicerExtension-VMTK

Wizards

  • ChangeTracker

Extensions by contributing organization

54 contributing organizations:

Asclepios INRIA) and Nikos Chrisochoides (CRTC

Boston Childrens Hospital

Brigham and Women's Hospital

BWH

BWH & MGH

BWH, SPL

BWH/UAB

CARMA

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China

Crisalix

CRTC

Department of Neurosurgery, PLA General Hospital, Beijing, China

Department of Orthodontics, UNC

GE

GE GLobal Research

GT

Isomics

Kitware

LUH

Massachusetts General Hospital

Moka Creative LLC, Washington University in St. Louis

NIRAL, UNC

Noware

Orobix

PerkLab at Queen's University

PerkLab, Queen's

PerkLab, Queen's University

PMH

Queen's University

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

SBU

SCI Institute

Shiga University of Medical Science, Japan

Shiga University of Medical Science, Japan, SPL

SPL

SPL and BWH

SPL B&W Harvard

SRI

Stony Brook University

Surgical Planning Lab

UAB

UIowa

UNC

Univ of Michigan

University College Cork

University of Bern

University of Heidelberg

University of Iowa

University of Utah

Utah

UWA

Washington University in St. Louis

yogesh@bwh.harvard.edu

Extensions by contributing organization

54 contributing organizations:

Extensions by contributing individual

125 contributing individuals:

Adrien Kaiser

Akila Viswanathan

Alan Morris

Alex Yarmarkovich

Alexis Girault

Alireza Mehrtash

Allen Tannenbaum

Andinet Enquobahrie

Andras Lasso

Andre Mastmeyer

Andrey Fedorov

Andriy Fedorov

Andriy Kot

Antonio Damato

Antonio Tristan-Vega

Arie Nakhmani

Arnaud Gelas

Atsushi Yamada

Beatriz Paniagua

Bill Lorensen

Bradley Lowekamp

Brig Bagley

Carl-Fredrik Westin

Christian Baumgartner

Csaba Pinter

Dan Marcus

Daniel Haehn

Danny Perry

Demian Wasssermann

Dinggang Shen

Ethan Ulrich

Eugene Kholmovski

Fotis Drakopoulos

Francois Budin

Franklin King

Greg Gardner

Greg Sharp

Guillaume Pernelle

Hans Johnson

Harini Veeraraghavan

Ipek Oguz

Ivan Kolesov

Jan Egger

Jayender Jagadeesan

Jean-Christophe Fillion-Robin

Jennifer Andrea

Jessica Forbes

Jiashu Zhang

Jim Miller

Jonathan Bronson

Josh Cates

Julien Finet

Juliette Pera

Jun LIN

Junichi Tokuda

Karl Fritscher

Kent Williams

Kevin Wang

Kilian Pohl

Koichiro Murakami

Lauren Barber

Laurent Chauvin

Liang-Jia Zhu

Liangjia Zhu

Luca Antiga

Luis G. Torres

Luping Fang

Mahnaz Maddah

Manson Winsauer

Marcel Prastawa

Martha Shenton

Martin Styner

Matt Lougheed

Mattea Welch

Matthew Holden

Matthew S. Holden

Mauricio Reyes

Ming-ching Chang

Minjeong Kim

Nabgha Fahrat

Nicole Aucoin

Nigel Goh

Nikos Chrisochoides

Olivier Clatz

Pat Marion

Patricio Vela

Paul Mercea

Pengdong Xiao

Peter Black

Peter Karasev

Peter Savadjiev

Pietro Nardelli

Qing Pan

Rick Herrick

Rob MacLeod

Ron Kikinis

Ruifeng Chen

Ryan Eckbo

S

Salma Bengali

Sam Song

Sebastian Tauscher

Stefan Bauer

Stefan Lienhard

Steve Pieper

Sunil Kumar

Sylvain Bouix

Tamas Ungi

Thomas Fejes

Tina Kapur

Tobias Penzkofer

Vinicius Boen

Vivek Narayan

Xiaodong Tao

Xiaofeng Liu

Xiaojun Chen

Xiaojun CHEN

Xiaolei Chen

y Wells

Yi Gao

Yingxuan Zhu

Yinpeng Li

Yixun Liu

Yogesh Rathi

Yundi Shi

Extensions by contributing individual

125 contributing individuals: