User:UpdateBot/Issue-2843-Consolidated-Extension-List

Modules by name

156 modules:

• ABC (cli, bundled in ABC extension)
• ACPCTransform (cli, built-in)
• Add Scalar Volumes (cli, built-in)
• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
• Annotations (loadable, built-in)
• Apply Matrix (cli, bundled in CMFreg extension)
• Bin Shrink (cli, bundled in IASEM extension)
• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• BRAINSDemon Warp (cli, built-in)
• BRAINSDWICleanup (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSLabel Stats (cli, built-in)
• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Cast Scalar Volume (cli, built-in)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Checker Board Filter (cli, built-in)
• Cleaver CLI (cli, bundled in Cleaver Extension extension)
• Colors (loadable, built-in)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Create DICOMSeries (cli, built-in)
• Crop Volume (loadable, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Curve Maker (scripted, bundled in Curve Maker extension)
• Data (loadable, built-in)
• Data Probe (scripted, built-in)
• Data Store (loadable, built-in)
• Dice Computation (loadable, bundled in Dice Computation extension)
• DICOM (scripted, built-in)
• DICOM2Full Brain Tractography (scripted, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Dilate Label (cli, bundled in Erode Dilate Label extension)
• Downsize (cli, bundled in CMFreg extension)
• DWIConvert (cli, built-in)
• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• Editor (scripted, built-in)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• EMSegment Quick (loadable, built-in)
• EMSegment Transform To New Format (cli, built-in)
• Endoscopy (scripted, built-in)
• Erode Label (cli, bundled in Erode Dilate Label extension)
• Extract Skeleton (cli, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• Fiber Bundle Label Select (cli, built-in)
• Fiber Bundle To Label Map (scripted, built-in)
• Fiducial Registration (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Gaussian Blur Image Filter (cli, built-in)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Growing (cli, bundled in CMFreg extension)
• Gyro Guide (scripted, bundled in Gyro Guide extension)
• Histogram Matching (cli, built-in)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)
• i Gyne (scripted, bundled in i Gyne extension)
• Image Label Combine (cli, built-in)
• Intensity Difference Metric (cli, bundled in Change Tracker extension)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• KUtil (scripted, bundled in Carrera Slice extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Label Map Smoothing (cli, built-in)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Label Statistics (scripted, built-in)
• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
• Landmark Registration (scripted, bundled in CMFreg extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• Markups (loadable, built-in)
• Mask Creation (cli, bundled in CMFreg extension)
• Mask Scalar Volume (cli, built-in)
• Median Image Filter (cli, built-in)
• Merge Models (cli, built-in)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• Metafile Importer (loadable, bundled in Multidim Data extension)
• Model Maker (cli, built-in)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Non Growing (cli, bundled in CMFreg extension)
• Open IGTLink IF (loadable, built-in)
• Orient Scalar Volume (cli, built-in)
• PBNRR (cli, bundled in PBNRR extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Perform Metric Test (cli, built-in)
• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Port Placement (scripted, bundled in Port Placement extension)
• Probe Volume With Model (cli, built-in)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Reformat (loadable, built-in)
• Reporting (loadable, bundled in Reporting extension)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)
• Robust Statistics Segmenter (cli, built-in)
• Sample Data (scripted, built-in)
• Scene Views (loadable, built-in)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)
• Simple Filters (scripted, built-in)
• Simple Region Growing Segmentation (cli, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Subject Hierarchy (loadable, built-in)
• Subtract Scalar Volumes (cli, built-in)
• Surface Registration (scripted, bundled in CMFreg extension)
• Surface Toolbox (scripted, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
• Threshold Scalar Volume (cli, built-in)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
• Tractography Display (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)
• Tractography Label Map Seeding (cli, built-in)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• VBRAINSDemon Warp (cli, built-in)
• Vector To Scalar Volume (scripted, built-in)
• View Controllers (loadable, built-in)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)
• Voting Binary Hole Filling Image Filter (cli, built-in)
• Welcome (loadable, built-in)
• Window Level Effect (scripted, bundled in Window Level Effect extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)
• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Modules by category

30 categories:

• BRAINS
  • Label Statistics
• CMF Registration
  • Voxelbase Registration
• Converters
• Developer Tools
  • DICOM Plugins
  • Editor Extensions
  • Matlab
• Diffusion
  • Diffusion Data Conversion
  • Diffusion Tensor Images
  • Diffusion Weighted Images
  • Tractography
• Editor Effects
• Endoscopy
• Examples
• Exporter
• Filtering
  • Arithmetic
  • Denoising
  • Morphology
• IGT
• Informatics
• Legacy
  • Converters
  • Diffusion
    • Denoising
    • Diffusion Data Conversion
  • Filtering
  • Registration
  • Work in Progress
    • Diffusion Tensor
      • Test
• Mesh Generation
• Mesh Generation
• Microscopy
• Multidimensional data
• Multi Volume Support
• Perk Tutor
• Quantification
  • Change Quantification
• Registration
  • Specialized
• Segmentation
  • Specialized
• Slicelets
• Surface Models
• Testing
  • Test Cases
• Unspecified
• Utilities
  • BRAINS
• Wizards
• Work in Progress
  • Converters
  • Informatics
    • Test Cases
• XNATSlicer

BRAINS

LabelStatistics

• BRAINSLabel Stats

CMF Registration

• Apply Matrix
• Landmark Registration
• Surface Registration
• Label Extraction
• Label Addition
• Downsize

Voxelbase Registration

• Growing
• Mask Creation
• Non Growing

Converters

• Vector To Scalar Volume
• Crop Volume
• Create DICOMSeries
• Orient Scalar Volume

Developer Tools

• Event Broker
• Double Arrays
• Py Dev Remote Debug
• Cameras
• Extension Wizard
• Execution Model Tour
• Image Maker

DICOM Plugins

• DICOMRWVMPlugin
• DICOMLongitudinal PETCTPlugin
• Multi Volume Importer Plugin
• DICOMPETSUVPlugin
• DICOMDiffusion Volume Plugin
• DICOMSegmentation Plugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin

Editor Extensions

• Binary Watershed Effect
• Fast Grow Cut Effect
• Carrera Slice Effect
• Double Threshold Effect

Matlab

• Matlab Module Generator
• Matlab Commander

Diffusion

• Tractography Display
• DICOM2Full Brain Tractography

Diffusion Data Conversion

• DWIConvert

Diffusion Tensor Images

• Resample DTIVolume
• Diffusion Tensor Scalar Measurements
• Tractography Label Map Seeding
• Tractography Interactive Seeding

Diffusion Weighted Images

• DWIRician LMMSEFilter
• DWIJoint Rician LMMSEFilter
• DWITo DTIEstimation
• Finsler Backtracing
• Resample Scalar Vector DWIVolume
• Finsler Tractography
• Diffusion Weighted Volume Masking

Tractography

• Fiber Bundle To Label Map
• Fiber Bundle Label Select

Editor Effects

• Window Level Effect

Endoscopy

• Endoscopy

Examples

• Carrera Slice
• Fast Grow Cut
• Fast Grow Cut Segmenter
• Segmentation Aided Registration

Exporter

• Slicer To Kiwi Exporter

Filtering

• Extract Skeleton
• Threshold Scalar Volume
• N4ITKBias Field Correction
• Simple Filters
• Image Label Combine
• Voting Binary Hole Filling Image Filter
• Histogram Matching
• Checker Board Filter

Arithmetic

• Multiply Scalar Volumes
• Add Scalar Volumes
• Cast Scalar Volume
• Subtract Scalar Volumes
• Mask Scalar Volume

Denoising

• Gradient Anisotropic Diffusion
• Median Image Filter
• Gaussian Blur Image Filter
• Curvature Anisotropic Diffusion

Morphology

• Grayscale Fill Hole Image Filter
• Erode Label
• Dilate Label
• Grayscale Grind Peak Image Filter

IGT

• Percutaneous Approach Analysis
• Port Placement
• Open IGTLink IF
• Needle Finder
• Tracker Stabilizer
• Gyro Guide
• i Gyne
• Corner Annotation

Informatics

• Annotations
• Markups
• Units
• DICOM
• Sample Data
• Subject Hierarchy
• Data
• Colors
• Curve Maker
• TCIABrowser

Legacy

Converters

• BSpline To Deformation Field

Diffusion

Denoising

• DWIUnbiased Non Local Means Filter

Diffusion Data Conversion

• DTIimport
• DTIexport

Filtering

• Otsu Threshold Image Filter
• Resample Scalar Volume

Registration

• Test Grid Transform Registration
• Expert Automated Registration

Work in Progress

Diffusion Tensor

Test

• Diffusion Tensor Test

Mesh Generation

• Cleaver CLI

MeshGeneration

• Body Centric Cubic Mesh
• Mesh Compression

Microscopy

• Bin Shrink
• Label Object Statistics
• Spacing Aware Curvature Diffusion
• IASEMImport Series
• IASEMImport

Multidimensional data

• Metafile Importer
• Sequence Browser
• Sequences

MultiVolume Support

• Multi Volume Explorer
• Multi Volume Importer

Perk Tutor

• Python Metrics Calculator
• Workflow Segmentation
• Transform Recorder
• Perk Evaluator

Quantification

• PETStandard Uptake Value Computation
• SUVFactor Calculator
• Spinal Curvature Measurement
• Pk Modeling
• Label Statistics
• PETSUVImage Maker
• Dice Computation
• Data Probe

ChangeQuantification

• Intensity Difference Metric

Registration

• BRAINSResample
• Transforms
• BRAINSResize
• Perform Metric Test
• BRAINSFit
• PBNRR

Specialized

• ACPCTransform
• Fiducial Registration
• VBRAINSDemon Warp
• BRAINSDemon Warp
• Reformat

Segmentation

• Editor
• EMSegment Quick
• Simple Region Growing Segmentation
• EMSegment
• Volume Clip With Roi
• Swiss Skull Stripper
• Airway Segmentation CLI
• LAScar Segmenter
• Sobolev Segmenter
• Volume Clip With Model
• IGR3D MABMIS Testing
• ABC
• IGR3D MABMIS Training
• Intensity Segmenter

Specialized

• EMSegment Command Line
• Robust Statistics Segmenter
• BRAINSROIAuto

Slicelets

• Gel Dosimetry Analysis Algo

Surface Models

• Model To Label Map
• Merge Models
• Surface Toolbox
• Probe Volume With Model
• Grayscale Model Maker
• Label Map Smoothing
• Model Maker

Testing

• Self Tests
• CLIROITest
• CLI4Test
• Threshold Threading Test
• Scoliosis Monitoring
• Performance Tests
• Slicer MRBTest

TestCases

• Slice Link Logic
• Atlas Tests
• RSNAQuant Tutorial
• Volume Rendering Scene Close
• test tractography display
• Subject Hierarchy Core Plugins Self Test
• slicer Close Crash Bug2590
• Subject Hierarchy Generic Self Test
• Charting
• Scene Performance
• Markups In Compare Viewers Self Test
• fiber visibility crash2438
• scene Import2428
• RSNAVis Tutorial
• JRC2013Vis
• RSNA2012Prostate Demo
• Add Many Markups Fiducial Test
• Neurosurgical Planning Tutorial Markups Self Test
• Colors Scalar Bar Self Test
• Markups In Views Self Test
• Change Tracker Self Test
• Fiducial Layout Switch Bug1914
• View Controllers Slice Interpolation Bug1926
• Slicer4Minute
• label Toggle Bug2049

Unspecified

• BRAINSDWICleanup

Utilities

• Thingiverse Browser
• EMSegment Transform To New Format
• Data Store

BRAINS

• BRAINSTransform Convert

Wizards

• Compare Volumes
• Change Tracker

Work in Progress

• Longitudinal PETCT

Converters

• Label To DICOMSEGConverter

Informatics

• Reporting

TestCases

• Reporting Self Test
• Label To DICOMSEGConverter Self Test

XNATSlicer

• Xnat Slicer

Modules by contributing organization

62 contributing organizations:

• Asclepios INRIA
• AZE R&D
• Brigham and Women's Hospital
• BWH
• BWH, SPL
• BWH, SUMS
• BWH/UAB
• College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China
• CRTC
• gatech
• GE
• Georgia Institute of Technology
• Georgia Tech
• IBM
• Isomics
• Isomics Inc.
• Isomics, Inc.
• Isomics, pieper@isomics.com
• Kitware
• Kitware)
• MGH
• Moka Creative, LLC, kumar.sunil.p@gmail.com
• MSC/NLM
• Noware
• Orobix
• Perk Lab at Queen's University
• Perk Lab, Queen's
• Perk Lab, Queen's University
• PMH
• Queen's
• Queen's University
• Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
• SAIC-Frederick, NCI-Frederick
• SBU
• SCI Institute
• Shiga University of Medical Science, Japan, SPL
• SNR
• SPL
• SPL B&W Harvard
• SPL, BWH
• SPL, BWH, UPenn
• Stony Brook University
• SUMS
• Surgical Planning Lab
• UAB
• Uiowa
• UIowa
• UNC
• Univ of Michigan
• Univ. of Iowa
• University College Cork
• University of Alabama Birmingham
• University of Heidelberg
• University of Iowa
• University of Iowa) and Andrey Fedorov (SPL
• UPenn
• Utah
• UVa
• UWA
• Wash U-St. Louis, dmarcus@wustl.edu
• while at GE

Asclepios INRIA

• PBNRR (cli, bundled in PBNRR extension)

AZE R&D

• JRC2013Vis

Brigham and Women's Hospital

• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Surface Toolbox (scripted, built-in)
• test tractography display

BWH

• Add Many Markups Fiducial Test
• Change Tracker Self Test
• Colors Scalar Bar Self Test
• Curve Maker (scripted, bundled in Curve Maker extension)
• Dice Computation (loadable, bundled in Dice Computation extension)
• DICOMRWVMPlugin
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• Fiducial Layout Switch Bug1914
• Markups (loadable, built-in)
• Markups In Compare Viewers Self Test
• Markups In Views Self Test
• Neurosurgical Planning Tutorial Markups Self Test
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Volume Rendering Scene Close (scripted, built-in)
• Window Level Effect (scripted, bundled in Window Level Effect extension)

BWH, SPL

• Crop Volume (loadable, built-in)

BWH, SUMS

• Corner Annotation (scripted, bundled in Corner Annotation extension)

BWH/UAB

• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China

• Gyro Guide (scripted, bundled in Gyro Guide extension)

CRTC

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

gatech

• Robust Statistics Segmenter (cli, built-in)

GE

• Add Scalar Volumes (cli, built-in)
• Charting (scripted, built-in)
• Checker Board Filter (cli, built-in)
• Create DICOMSeries (cli, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Diffusion Tensor Test (cli, built-in)
• DWIConvert (cli, built-in)
• Execution Model Tour (cli, built-in)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Histogram Matching (cli, built-in)
• Label Map Smoothing (cli, built-in)
• Median Image Filter (cli, built-in)
• Model Maker (cli, built-in)
• Model To Label Map (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Orient Scalar Volume (cli, built-in)
• Otsu Threshold Image Filter (cli, built-in)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Resample Scalar Volume (cli, built-in)
• Simple Region Growing Segmentation (cli, built-in)
• Slice Link Logic (scripted, built-in)
• Slicer4Minute (scripted, built-in)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Subtract Scalar Volumes (cli, built-in)
• View Controllers (loadable, built-in)
• View Controllers Slice Interpolation Bug1926
• Voting Binary Hole Filling Image Filter (cli, built-in)

Georgia Institute of Technology

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Georgia Tech

• Carrera Slice (loadable, bundled in Carrera Slice extension)

IBM

• Annotations (loadable, built-in)

Isomics

• Atlas Tests
• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Data (loadable, built-in)
• Data Probe (scripted, built-in)
• DICOM (scripted, built-in)
• Editor (scripted, built-in)
• Endoscopy (scripted, built-in)
• fiber visibility crash2438
• Fiber Bundle To Label Map (scripted, built-in)
• Label Statistics (scripted, built-in)
• label Toggle Bug2049
• Landmark Registration (scripted, bundled in CMFreg extension)
• Models (loadable, built-in)
• Performance Tests
• Reporting (loadable, bundled in Reporting extension)
• RSNA2012Prostate Demo
• RSNAQuant Tutorial
• RSNAVis Tutorial
• Sample Data (scripted, built-in)
• scene Import2428
• Self Tests
• Simple Filters (scripted, built-in)
• slicer Close Crash Bug2590
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Tractography Interactive Seeding (loadable, built-in)
• Transforms (loadable, built-in)
• Vector To Scalar Volume (scripted, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)

Isomics Inc.

• DICOMDiffusion Volume Plugin
• DICOMLongitudinal PETCTPlugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin
• Slicer MRBTest
• Threshold Threading Test

Isomics, Inc.

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Isomics, pieper@isomics.com

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Kitware

• Cameras (loadable, built-in)
• Colors (loadable, built-in)
• Data (loadable, built-in)
• Data Store (loadable, built-in)
• Double Arrays (loadable, built-in)
• Event Broker
• Expert Automated Registration (cli, built-in)
• Extension Wizard (scripted, built-in)
• Extract Skeleton (cli, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• fiber visibility crash2438
• Fiducial Registration (cli, built-in)
• Gaussian Blur Image Filter (cli, built-in)
• Image Maker (cli, bundled in Image Maker extension)
• label Toggle Bug2049
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Models (loadable, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Port Placement (scripted, bundled in Port Placement extension)
• Reformat (loadable, built-in)
• Sample Data (scripted, built-in)
• Scene Performance (scripted, built-in)
• Simple Filters (scripted, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Threshold Scalar Volume (cli, built-in)
• Tractography Display (loadable, built-in)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)
• Welcome (loadable, built-in)

Kitware)

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

MGH

• Pk Modeling (cli, bundled in Pk Modeling extension)

Moka Creative, LLC, kumar.sunil.p@gmail.com

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

MSC/NLM

• Label Object Statistics (scripted, bundled in IASEM extension)
• Simple Filters (scripted, built-in)

Noware

• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)

Orobix

• Surface Toolbox (scripted, built-in)

PerkLab at Queen's University

• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)

PerkLab, Queen's

• Metafile Importer (loadable, bundled in Multidim Data extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)
• Transforms (loadable, built-in)

PerkLab, Queen's University

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)

PMH

• Colors Scalar Bar Self Test
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)

Queen's

• Data (loadable, built-in)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Subject Hierarchy (loadable, built-in)
• Subject Hierarchy Core Plugins Self Test
• Subject Hierarchy Generic Self Test

Queen's University

• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)

SAIC-Frederick, NCI-Frederick

• Volume Rendering (loadable, built-in)

SBU

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

SCI Institute

• Cleaver CLI (cli, bundled in Cleaver Extension extension)

Shiga University of Medical Science, Japan, SPL

• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)

SNR

• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

SPL

• DICOM2Full Brain Tractography (scripted, built-in)
• Label To DICOMSEGConverter Self Test
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Reporting Self Test
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

SPL B&W Harvard

• PBNRR (cli, bundled in PBNRR extension)

SPL, BWH

• ACPCTransform (cli, built-in)
• Annotations (loadable, built-in)
• BSpline To Deformation Field (cli, built-in)
• Cast Scalar Volume (cli, built-in)
• Colors (loadable, built-in)
• Data (loadable, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• DTIexport (cli, built-in)
• DTIimport (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• Fiducial Registration (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Image Label Combine (cli, built-in)
• Mask Scalar Volume (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Probe Volume With Model (cli, built-in)
• Reporting (loadable, bundled in Reporting extension)
• Robust Statistics Segmenter (cli, built-in)
• Scene Views (loadable, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Test Grid Transform Registration (cli, built-in)
• Threshold Scalar Volume (cli, built-in)
• Tractography Label Map Seeding (cli, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)
• Welcome (loadable, built-in)

SPL, BWH, UPenn

• Merge Models (cli, built-in)

Stony Brook University

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

SUMS

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Surgical Planning Lab

• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)

UAB

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

Uiowa

• DWIConvert (cli, built-in)

UIowa

• DWIConvert (cli, built-in)

UNC

• DWIRician LMMSEFilter (cli, built-in)
• Extract Skeleton (cli, built-in)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• Port Placement (scripted, bundled in Port Placement extension)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)

Univ of Michigan

• Surface Registration (scripted, bundled in CMFreg extension)

Univ. of Iowa

• DICOMPETSUVPlugin
• DICOMRWVMPlugin

University College Cork

• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)

University of Alabama Birmingham

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

University of Heidelberg

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

University of Iowa

• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

University of Iowa) and Andrey Fedorov (SPL

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

UPenn

• Annotations (loadable, built-in)
• EMSegment (loadable, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Scene Views (loadable, built-in)

Utah

• Label Map Smoothing (cli, built-in)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

UVa

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)

UWA

• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)

WashU-St. Louis, dmarcus@wustl.edu

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

while at GE

• Pk Modeling (cli, bundled in Pk Modeling extension)

Modules by contributing individual

148 contributing individuals:

• Akila Viswanathan
• Alan Morris (Utah)
• Alex Yarmakovich (Isomics)
• Alex Yarmarkovich (Kitware))
• Ali Ghayoor
• Alireza Mehrtash (SPL and BWH)
• Allen Tannenbaum (Stony Brook University)
• Analysis Laboratory
• Andinet Enquobahrie (Kitware)
• Andras Lasso (PerkLab, Queen's University)
• Andreas Freudling (SPL, BWH)
• Andrey Fedorov (SPL B&W Harvard)
• Andriy Kot (CRTC)
• Anonymous
• Antonio Damato
• Antonio Tristan Vega (UVa)
• Arie Nakhmani (UAB)
• Atsushi Yamada (SUMS)
• Beatriz Paniagua from Department of Orthodontics (UNC)
• Benjamin Long (Kitware)
• Bill Lorensen (Noware)
• Brad Davis
• Bradley Lowekamp (MSC/NLM)
• BWH
• Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez (Kitware))
• Casey B Goodlett (Kitware)
• Charles Marion (Kitware)
• Csaba Pinter (PerkLab, Queen's University)
• Dan Marcus (Washington University in St. Louis)
• Daniel Blezek (GE)
• Daniel Haehn (UPenn)
• Danny Perry (Utah)
• Demian Wassermann (Brigham and Women's Hospital)
• Dinggang Shen (UNC)
• Dirk Padfield (GE)
• Dominik Meier (SPL, BWH)
• Ethan Ulrich (Univ. of Iowa)
• ez (UVa)
• Fotis Drakopoulos (CRTC)
• Francois Budin (NIRAL, UNC)
• Franklin King (PerkLab, Queen's University)
• Greg Gardner (Utah)
• Greg Harris
• Guido Gerig (UNC)
• Guillaume Pernelle
• Hans J. Johnson
• Hans Johnson (UIowa)
• hans-johnson -at- uiowa.edu
• http://www.psychiatry.uiowa.edu
• Ivan Kolesov (Stony Brook University)
• Jan Egger
• Jayender Jagadeesan (BWH)
• Jean-Baptiste Berger (Kitware)
• Jean-Christophe Fillion-Robin (Kitware)
• Jim Miller (GE)
• Johan Andruejol (Kitware)
• John Evans (MGH)
• Jonathan Bronson (SCI Institute)
• Josh Cates (Utah)
• Joy Matsui (UIowa)
• Julien Finet (Kitware)
• Julien Jomier (Kitware)
• Junichi Tokuda (BWH)
• Kent Williams (UIowa)
• Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)
• Kilian Pohl (UPenn)
• Koichiro Murakami (BWH, SUMS)
• Lauren Barber
• Lauren O'Donnell (SPL, BWH)
• Laurent Chauvin (BWH)
• Liang-Jia Zhu (UAB)
• Liangjia Zhu (Stony Brook University)
• Luca Antiga (Orobix)
• Luis G. Torres (UNC)
• Luping Fang (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• Marc Niethammer (UNC)
• Marcel Prastawa prastawa@sci.utah.edu
• Mark Scully (Uiowa)
• Markus Van Tol (University of Iowa) and Andrey Fedorov (SPL)
• Martin Styner (UNC)
• Mason Winsauer
• Matt Lougheed (PerkLab, Queen's University)
• Matthew Holden (Queen's University)
• Matthew S. Holden (Queen's University)
• Matthew Woehlke (Kitware)
• Michael Jeulin-Lagarrigue (Kitware)
• Minjeong Kim (UNC)
• Nabgha Fahrat
• Neuro Image Resarch
• Nicholas Herlambang (AZE R&D)
• Nick Tustison (UPenn)
• Nicole Aucoin (BWH)
• Nigel Goh (UWA)
• Nikos Chrisochoides (CRTC)
• Olivier Clatz (Asclepios INRIA) and Nikos Chrisochoides (CRTC)
• Pat Marion (Kitware)
• Patricio Vela (Georgia Institute of Technology)
• Paul Mercea (University of Heidelberg)
• Pengdong Xiao (Department of Orthodontics, UNC)
• Peter Black (BWH)
• Peter Karasev (Georgia Tech)
• Peter Savadjiev (Kitware))
• Pierre Seroul (UNC)
• Pietro Nardelli (University College Cork)
• Polina Goll
• Qing Pan (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• Raul San Jose (SPL, BWH)
• Rob Mac Leod (Utah)
• Ron Kikinis (BWH)
• Ross Whitaker (Utah)
• Ruifeng Chen (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• S
• Sam Song
• Santiago Aja Fern (UVa)
• Sebastien Barré (Kitware)
• Sebastien Barre
• Shigeyuki Naka (SUMS)
• Soichiro Tani (SUMS)
• Sonia Pujol (SPL, BWH)
• Stephen Aylward (Kitware)
• Stephen R Aylward (Kitware)
• Steve Pieper (Isomics Inc.)
• Sunil Kumar (Moka Creative, LLC, kumar.sunil.p@gmail.com)
• Sylvain Bouix (BWH)
• Tamas Ungi (PerkLab, Queen's University)
• the University of North Carolina at Chapel Hill (UNC)
• Tina Kapur
• Tobias Penzkofer
• Tohru Tani (SUMS)
• UNC Medical School
• Uof M School Of Dentistry
• Uof M School of Dentistry
• Vince Magnotta (UIowa)
• Vincent A. Magnotta
• Vincent Magnotta
• Vinicius Boen (Univ of Michigan)
• Wendy Plesniak (SPL, BWH)
• Xiaodong Tao (GE)
• Xiaofeng Liu (GE GLobal Research)
• Xiaojun Chen
• y Wells
• Yanling Liu (SAIC-Frederick, NCI-Frederick)
• Yi Gao (BWH/UAB)
• Yinglin Lee (SPL, BWH)
• Yingxuan Zhu (GE)
• Yixun Liu (CRTC)
• Yong Zhang (IBM)
• Yumin Yuan

Akila Viswanathan

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Alan Morris

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Alex Yarmakovich

• Models (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)

Alex Yarmarkovich

• Data (loadable, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Image Label Combine (cli, built-in)
• Transforms (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)

Ali Ghayoor

• BRAINSTransform Convert (cli, built-in)
• Perform Metric Test (cli, built-in)

Alireza Mehrtash

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)

Allen Tannenbaum

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Robust Statistics Segmenter (cli, built-in)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

Analysis Laboratory

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Andinet Enquobahrie

• Port Placement (scripted, bundled in Port Placement extension)

Andras Lasso

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Metafile Importer (loadable, bundled in Multidim Data extension)
• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)
• Transforms (loadable, built-in)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)

Andreas Freudling

• Volume Rendering (loadable, built-in)

Andrey Fedorov

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• BSpline To Deformation Field (cli, built-in)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Change Tracker Self Test
• Crop Volume (loadable, built-in)
• DICOMRWVMPlugin
• DICOMSegmentation Plugin
• Intensity Difference Metric (cli, bundled in Change Tracker extension)
• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
• Label To DICOMSEGConverter Self Test
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Multi Volume Importer Plugin
• N4ITKBias Field Correction (cli, built-in)
• PBNRR (cli, bundled in PBNRR extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Reporting (loadable, bundled in Reporting extension)
• Reporting Self Test
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Window Level Effect (scripted, bundled in Window Level Effect extension)

Andriy Kot

• PBNRR (cli, bundled in PBNRR extension)

Anonymous

• CLIROITest (cli, built-in)
• EMSegment Transform To New Format (cli, built-in)

Antonio Damato

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Antonio Tristan Vega

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

Arie Nakhmani

• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

Atsushi Yamada

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Beatriz Paniagua from Department of Orthodontics

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Benjamin Long

• Sample Data (scripted, built-in)

Bill Lorensen

• Add Scalar Volumes (cli, built-in)
• Checker Board Filter (cli, built-in)
• Create DICOMSeries (cli, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Diffusion Tensor Test (cli, built-in)
• Execution Model Tour (cli, built-in)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Histogram Matching (cli, built-in)
• Median Image Filter (cli, built-in)
• Model Maker (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Orient Scalar Volume (cli, built-in)
• Otsu Threshold Image Filter (cli, built-in)
• Resample Scalar Volume (cli, built-in)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Subtract Scalar Volumes (cli, built-in)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• Voting Binary Hole Filling Image Filter (cli, built-in)

Brad Davis

• EMSegment Command Line (cli, built-in)

Bradley Lowekamp

• Bin Shrink (cli, bundled in IASEM extension)
• Double Threshold Effect (scripted, bundled in IASEM extension)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Simple Filters (scripted, built-in)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)

BWH

• DICOMSegmentation Plugin
• Multi Volume Importer Plugin

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

Casey B Goodlett

• Expert Automated Registration (cli, built-in)
• Fiducial Registration (cli, built-in)

Charles Marion

• Data Store (loadable, built-in)

Csaba Pinter

• Data (loadable, built-in)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Subject Hierarchy (loadable, built-in)
• Subject Hierarchy Core Plugins Self Test
• Subject Hierarchy Generic Self Test

Dan Marcus

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Daniel Blezek

• Execution Model Tour (cli, built-in)

Daniel Haehn

• Annotations (loadable, built-in)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• Merge Models (cli, built-in)
• Scene Views (loadable, built-in)

Danny Perry

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Demian Wassermann

• DICOM2Full Brain Tractography (scripted, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Fiber Bundle Label Select (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• test tractography display
• Tractography Label Map Seeding (cli, built-in)

Dinggang Shen

• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)

Dirk Padfield

• Label Map Smoothing (cli, built-in)

Dominik Meier

• Fiducial Registration (cli, built-in)

Ethan Ulrich

• DICOMPETSUVPlugin
• DICOMRWVMPlugin
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

ez

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)

Fotis Drakopoulos

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

Francois Budin

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)

Franklin King

• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Transforms (loadable, built-in)

Greg Gardner

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Greg Harris

• BRAINSDemon Warp (cli, built-in)
• BRAINSResample (cli, built-in)
• VBRAINSDemon Warp (cli, built-in)

Guido Gerig

• Extract Skeleton (cli, built-in)

Guillaume Pernelle

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Hans J. Johnson

• BRAINSDemon Warp (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• VBRAINSDemon Warp (cli, built-in)

Hans Johnson

• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• DWIConvert (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

hans-johnson -at- uiowa.edu

• BRAINSFit (cli, built-in)
• BRAINSROIAuto (cli, built-in)

http://www.psychiatry.uiowa.edu

• BRAINSFit (cli, built-in)
• BRAINSROIAuto (cli, built-in)

Ivan Kolesov

• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

Jan Egger

• i Gyne (scripted, bundled in i Gyne extension)

Jayender Jagadeesan

• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

Jean-Baptiste Berger

• Data Store (loadable, built-in)

Jean-Christophe Fillion-Robin

• CLI4Test
• Data Store (loadable, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• fiber visibility crash2438
• label Toggle Bug2049
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Sample Data (scripted, built-in)
• Simple Filters (scripted, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Transforms (loadable, built-in)
• View Controllers (loadable, built-in)
• Welcome (loadable, built-in)

Jim Miller

• Charting (scripted, built-in)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Simple Region Growing Segmentation (cli, built-in)
• Slice Link Logic (scripted, built-in)
• Slicer4Minute (scripted, built-in)
• View Controllers (loadable, built-in)
• View Controllers Slice Interpolation Bug1926

Johan Andruejol

• Units (loadable, built-in)

John Evans

• Pk Modeling (cli, bundled in Pk Modeling extension)

Jonathan Bronson

• Cleaver CLI (cli, bundled in Cleaver Extension extension)

Josh Cates

• Label Map Smoothing (cli, built-in)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Joy Matsui

• DWIConvert (cli, built-in)

Julien Finet

• Cameras (loadable, built-in)
• Colors (loadable, built-in)
• Data (loadable, built-in)
• Double Arrays (loadable, built-in)
• Event Broker
• Image Maker (cli, bundled in Image Maker extension)
• Models (loadable, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Scene Performance (scripted, built-in)
• Threshold Scalar Volume (cli, built-in)
• Tractography Display (loadable, built-in)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)

Julien Jomier

• Gaussian Blur Image Filter (cli, built-in)

Junichi Tokuda

• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Curve Maker (scripted, bundled in Curve Maker extension)
• Dilate Label (cli, bundled in Erode Dilate Label extension)
• Erode Label (cli, bundled in Erode Dilate Label extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)

Kent Williams

• BRAINSDWICleanup (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• DWIConvert (cli, built-in)

Kevin Wang

• Colors Scalar Bar Self Test
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)

Kilian Pohl

• Annotations (loadable, built-in)
• Change Tracker (scripted, bundled in Change Tracker extension)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• Scene Views (loadable, built-in)

Koichiro Murakami

• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)

Lauren Barber

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Lauren O'Donnell

• Fiber Bundle Label Select (cli, built-in)
• Probe Volume With Model (cli, built-in)

Laurent Chauvin

• Curve Maker (scripted, bundled in Curve Maker extension)
• Dice Computation (loadable, bundled in Dice Computation extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

Liang-Jia Zhu

• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Liangjia Zhu

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

Luca Antiga

• Surface Toolbox (scripted, built-in)

Luis G. Torres

• Port Placement (scripted, bundled in Port Placement extension)

Luping Fang

• Gyro Guide (scripted, bundled in Gyro Guide extension)

Marc Niethammer

• DWIRician LMMSEFilter (cli, built-in)

Marcel Prastawa prastawa@sci.utah.edu

• ABC (cli, bundled in ABC extension)

Mark Scully

• DWIConvert (cli, built-in)

Markus Van Tol

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Martin Styner

• Extract Skeleton (cli, built-in)

Mason Winsauer

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Matt Lougheed

• Volume Clip With Model (scripted, bundled in Volume Clip extension)

Matthew Holden

• Metafile Importer (loadable, bundled in Multidim Data extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)

Matthew S. Holden

• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

Matthew Woehlke

• Extension Wizard (scripted, built-in)

Michael Jeulin-Lagarrigue

• Reformat (loadable, built-in)

Minjeong Kim

• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)

Nabgha Fahrat

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Neuro Image Resarch

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Nicholas Herlambang

• JRC2013Vis

Nick Tustison

• N4ITKBias Field Correction (cli, built-in)

Nicole Aucoin

• ACPCTransform (cli, built-in)
• Add Many Markups Fiducial Test
• Annotations (loadable, built-in)
• Cast Scalar Volume (cli, built-in)
• Colors (loadable, built-in)
• Colors Scalar Bar Self Test
• Data (loadable, built-in)
• Fiducial Layout Switch Bug1914
• Grayscale Model Maker (cli, built-in)
• Markups (loadable, built-in)
• Markups In Compare Viewers Self Test
• Markups In Views Self Test
• Mask Scalar Volume (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Neurosurgical Planning Tutorial Markups Self Test
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Reporting (loadable, bundled in Reporting extension)
• Scene Views (loadable, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Threshold Scalar Volume (cli, built-in)
• Volume Rendering Scene Close (scripted, built-in)
• Volumes (loadable, built-in)

Nigel Goh

• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)

Nikos Chrisochoides

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

Olivier Clatz

• PBNRR (cli, bundled in PBNRR extension)

Pat Marion

• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

Patricio Vela

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Paul Mercea

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

Pengdong Xiao

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Peter Black

• Change Tracker (scripted, bundled in Change Tracker extension)

Peter Karasev

• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Peter Savadjiev

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

Pierre Seroul

• Extract Skeleton (cli, built-in)

Pietro Nardelli

• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)

Polina Goll

• EMSegment Command Line (cli, built-in)

Qing Pan

• Gyro Guide (scripted, bundled in Gyro Guide extension)

Raul San Jose

• Diffusion Tensor Scalar Measurements (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• Tractography Label Map Seeding (cli, built-in)

Rob MacLeod

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Ron Kikinis

• ACPCTransform (cli, built-in)
• Cast Scalar Volume (cli, built-in)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Crop Volume (loadable, built-in)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• Mask Scalar Volume (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Robust Statistics Segmenter (cli, built-in)
• Surface Toolbox (scripted, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Threshold Scalar Volume (cli, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)

Ross Whitaker

• Label Map Smoothing (cli, built-in)

Ruifeng Chen

• Gyro Guide (scripted, bundled in Gyro Guide extension)

S

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Sam Song

• i Gyne (scripted, bundled in i Gyne extension)

Santiago Aja Fern

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)

Sebastien Barré

• Cameras (loadable, built-in)

Sebastien Barre

• EMSegment Command Line (cli, built-in)

Shigeyuki Naka

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Soichiro Tani

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Sonia Pujol

• Dice Computation (loadable, bundled in Dice Computation extension)
• DTIexport (cli, built-in)
• DTIimport (cli, built-in)

Stephen Aylward

• Extract Skeleton (cli, built-in)
• Gaussian Blur Image Filter (cli, built-in)

Stephen R Aylward

• Expert Automated Registration (cli, built-in)

Steve Pieper

• Atlas Tests
• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Data Probe (scripted, built-in)
• DICOM (scripted, built-in)
• DICOMDiffusion Volume Plugin
• DICOMLongitudinal PETCTPlugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin
• Editor (scripted, built-in)
• Endoscopy (scripted, built-in)
• fiber visibility crash2438
• Fiber Bundle To Label Map (scripted, built-in)
• Label Statistics (scripted, built-in)
• label Toggle Bug2049
• Landmark Registration (scripted, bundled in CMFreg extension)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Performance Tests
• Reporting (loadable, bundled in Reporting extension)
• RSNA2012Prostate Demo
• RSNAQuant Tutorial
• RSNAVis Tutorial
• Sample Data (scripted, built-in)
• scene Import2428
• Self Tests
• Simple Filters (scripted, built-in)
• slicer Close Crash Bug2590
• Slicer MRBTest
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Threshold Threading Test
• Vector To Scalar Volume (scripted, built-in)
• View Controllers (loadable, built-in)
• Volumes (loadable, built-in)
• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Sunil Kumar

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Sylvain Bouix

• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Tamas Ungi

• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

the University of North Carolina at Chapel Hill

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Tina Kapur

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Tobias Penzkofer

• i Gyne (scripted, bundled in i Gyne extension)

Tohru Tani

• Corner Annotation (scripted, bundled in Corner Annotation extension)

UNC Medical School

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

UofM School Of Dentistry

• Growing (cli, bundled in CMFreg extension)

UofM School of Dentistry

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Vince Magnotta

• DWIConvert (cli, built-in)

Vincent A. Magnotta

• BRAINSLabel Stats (cli, built-in)

Vincent Magnotta

• BRAINSResample (cli, built-in)

Vinicius Boen

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)
• Surface Registration (scripted, bundled in CMFreg extension)

Wendy Plesniak

• Annotations (loadable, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Scene Views (loadable, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• View Controllers (loadable, built-in)
• Welcome (loadable, built-in)

Xiaodong Tao

• DWIConvert (cli, built-in)
• Model To Label Map (cli, built-in)

Xiaofeng Liu

• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)

Xiaojun Chen

• i Gyne (scripted, bundled in i Gyne extension)

y Wells

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Yanling Liu

• Volume Rendering (loadable, built-in)

Yi Gao

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• i Gyne (scripted, bundled in i Gyne extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Robust Statistics Segmenter (cli, built-in)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Yinglin Lee

• Test Grid Transform Registration (cli, built-in)

Yingxuan Zhu

• Pk Modeling (cli, bundled in Pk Modeling extension)

Yixun Liu

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

Yong Zhang

• Annotations (loadable, built-in)

Yumin Yuan

• EMSegment Command Line (cli, built-in)

Modules by type

3 types:

• cli
• loadable
• scripted

cli

• ABC (cli, bundled in ABC extension)
• ACPCTransform (cli, built-in)
• Add Scalar Volumes (cli, built-in)
• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
• Apply Matrix (cli, bundled in CMFreg extension)
• Bin Shrink (cli, bundled in IASEM extension)
• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• BRAINSDemon Warp (cli, built-in)
• BRAINSDWICleanup (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSLabel Stats (cli, built-in)
• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• BSpline To Deformation Field (cli, built-in)
• Cast Scalar Volume (cli, built-in)
• Checker Board Filter (cli, built-in)
• Cleaver CLI (cli, bundled in Cleaver Extension extension)
• CLIROITest (cli, built-in)
• Create DICOMSeries (cli, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Tensor Test (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Dilate Label (cli, bundled in Erode Dilate Label extension)
• Downsize (cli, bundled in CMFreg extension)
• DTIexport (cli, built-in)
• DTIimport (cli, built-in)
• DWIConvert (cli, built-in)
• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)
• EMSegment Command Line (cli, built-in)
• EMSegment Transform To New Format (cli, built-in)
• Erode Label (cli, bundled in Erode Dilate Label extension)
• Execution Model Tour (cli, built-in)
• Expert Automated Registration (cli, built-in)
• Extract Skeleton (cli, built-in)
• Fiber Bundle Label Select (cli, built-in)
• Fiducial Registration (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Gaussian Blur Image Filter (cli, built-in)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Growing (cli, bundled in CMFreg extension)
• Histogram Matching (cli, built-in)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)
• Image Label Combine (cli, built-in)
• Image Maker (cli, bundled in Image Maker extension)
• Intensity Difference Metric (cli, bundled in Change Tracker extension)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Label Map Smoothing (cli, built-in)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Mask Scalar Volume (cli, built-in)
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Median Image Filter (cli, built-in)
• Merge Models (cli, built-in)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• Model Maker (cli, built-in)
• Model To Label Map (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Non Growing (cli, bundled in CMFreg extension)
• Orient Scalar Volume (cli, built-in)
• Otsu Threshold Image Filter (cli, built-in)
• PBNRR (cli, bundled in PBNRR extension)
• Perform Metric Test (cli, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Probe Volume With Model (cli, built-in)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)
• Resample Scalar Volume (cli, built-in)
• Robust Statistics Segmenter (cli, built-in)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Simple Region Growing Segmentation (cli, built-in)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Subtract Scalar Volumes (cli, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• Test Grid Transform Registration (cli, built-in)
• Threshold Scalar Volume (cli, built-in)
• Tractography Label Map Seeding (cli, built-in)
• VBRAINSDemon Warp (cli, built-in)
• Voting Binary Hole Filling Image Filter (cli, built-in)

loadable

• Annotations (loadable, built-in)
• Cameras (loadable, built-in)
• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Colors (loadable, built-in)
• Crop Volume (loadable, built-in)
• Data (loadable, built-in)
• Data Store (loadable, built-in)
• Dice Computation (loadable, bundled in Dice Computation extension)
• Double Arrays (loadable, built-in)
• EMSegment (loadable, built-in)
• EMSegment Quick (loadable, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• Markups (loadable, built-in)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Metafile Importer (loadable, bundled in Multidim Data extension)
• Models (loadable, built-in)
• Multi Volume Explorer (loadable, built-in)
• Open IGTLink IF (loadable, built-in)
• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Reformat (loadable, built-in)
• Reporting (loadable, bundled in Reporting extension)
• Scene Views (loadable, built-in)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)
• Subject Hierarchy (loadable, built-in)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
• Tractography Display (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)
• Welcome (loadable, built-in)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

scripted

• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Charting (scripted, built-in)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Curve Maker (scripted, bundled in Curve Maker extension)
• Data Probe (scripted, built-in)
• DICOM (scripted, built-in)
• DICOM2Full Brain Tractography (scripted, built-in)
• Double Threshold Effect (scripted, bundled in IASEM extension)
• Editor (scripted, built-in)
• Endoscopy (scripted, built-in)
• Extension Wizard (scripted, built-in)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• Fiber Bundle To Label Map (scripted, built-in)
• Gyro Guide (scripted, bundled in Gyro Guide extension)
• i Gyne (scripted, bundled in i Gyne extension)
• KUtil (scripted, bundled in Carrera Slice extension)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Label Statistics (scripted, built-in)
• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
• Landmark Registration (scripted, bundled in CMFreg extension)
• Multi Volume Importer (scripted, built-in)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Port Placement (scripted, bundled in Port Placement extension)
• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Sample Data (scripted, built-in)
• Scene Performance (scripted, built-in)
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Simple Filters (scripted, built-in)
• Slice Link Logic (scripted, built-in)
• Slicer4Minute (scripted, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Surface Registration (scripted, bundled in CMFreg extension)
• Surface Toolbox (scripted, built-in)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
• Vector To Scalar Volume (scripted, built-in)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)
• Volume Rendering Scene Close (scripted, built-in)
• Window Level Effect (scripted, bundled in Window Level Effect extension)
• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Modules by extension

46 extensions:

• ABC
• Airway Segmentation
• builtin
• Carrera Slice
• CBC 3D I2MConversion
• Change Tracker
• Cleaver Extension
• CMFreg
• Corner Annotation
• Curve Maker
• Dice Computation
• Erode Dilate Label
• Fast Grow Cut Effect
• Finsler Tractography
• Gel Dosimetry Analysis
• Gyro Guide
• IASEM
• i Gyne
• Image Maker
• Intensity Segmenter
• LAScar Segmenter
• Longitudinal PETCT
• MABMIS
• Matlab Bridge
• Multidim Data
• Needle Finder
• PBNRR
• Percutaneous Approach Analysis
• Perk Tutor
• PETDICOMExtension
• Pk Modeling
• Port Placement
• Py Dev Remote Debug
• Reporting
• Scoliosis
• Segmentation Aided Registration
• Slicer To Kiwi Exporter
• Sobolev Segmenter
• Swiss Skull Stripper
• TCIABrowser
• Thingiverse Browser
• Tracker Stabilizer
• Volume Clip
• Window Level Effect
• XNATSlicer

ABC

• ABC (cli, bundled in ABC extension)

AirwaySegmentation

• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)

builtin

• ACPCTransform (cli, built-in)
• Add Scalar Volumes (cli, built-in)
• Annotations (loadable, built-in)
• BRAINSDemon Warp (cli, built-in)
• BRAINSDWICleanup (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSLabel Stats (cli, built-in)
• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• BSpline To Deformation Field (cli, built-in)
• Cameras (loadable, built-in)
• Cast Scalar Volume (cli, built-in)
• Charting (scripted, built-in)
• Checker Board Filter (cli, built-in)
• CLIROITest (cli, built-in)
• Colors (loadable, built-in)
• Create DICOMSeries (cli, built-in)
• Crop Volume (loadable, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Data (loadable, built-in)
• Data Probe (scripted, built-in)
• Data Store (loadable, built-in)
• DICOM (scripted, built-in)
• DICOM2Full Brain Tractography (scripted, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Tensor Test (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Double Arrays (loadable, built-in)
• DTIexport (cli, built-in)
• DTIimport (cli, built-in)
• DWIConvert (cli, built-in)
• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)
• Editor (scripted, built-in)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• EMSegment Quick (loadable, built-in)
• EMSegment Transform To New Format (cli, built-in)
• Endoscopy (scripted, built-in)
• Execution Model Tour (cli, built-in)
• Expert Automated Registration (cli, built-in)
• Extension Wizard (scripted, built-in)
• Extract Skeleton (cli, built-in)
• Fiber Bundle Label Select (cli, built-in)
• Fiber Bundle To Label Map (scripted, built-in)
• Fiducial Registration (cli, built-in)
• Gaussian Blur Image Filter (cli, built-in)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Histogram Matching (cli, built-in)
• Image Label Combine (cli, built-in)
• Label Map Smoothing (cli, built-in)
• Label Statistics (scripted, built-in)
• Markups (loadable, built-in)
• Mask Scalar Volume (cli, built-in)
• Median Image Filter (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Open IGTLink IF (loadable, built-in)
• Orient Scalar Volume (cli, built-in)
• Otsu Threshold Image Filter (cli, built-in)
• Perform Metric Test (cli, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• Probe Volume With Model (cli, built-in)
• Reformat (loadable, built-in)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)
• Resample Scalar Volume (cli, built-in)
• Robust Statistics Segmenter (cli, built-in)
• Sample Data (scripted, built-in)
• Scene Performance (scripted, built-in)
• Scene Views (loadable, built-in)
• Simple Filters (scripted, built-in)
• Simple Region Growing Segmentation (cli, built-in)
• Slice Link Logic (scripted, built-in)
• Slicer4Minute (scripted, built-in)
• Subject Hierarchy (loadable, built-in)
• Subtract Scalar Volumes (cli, built-in)
• Surface Toolbox (scripted, built-in)
• Test Grid Transform Registration (cli, built-in)
• Threshold Scalar Volume (cli, built-in)
• Tractography Display (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)
• Tractography Label Map Seeding (cli, built-in)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• VBRAINSDemon Warp (cli, built-in)
• Vector To Scalar Volume (scripted, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volume Rendering Scene Close (scripted, built-in)
• Volumes (loadable, built-in)
• Voting Binary Hole Filling Image Filter (cli, built-in)
• Welcome (loadable, built-in)

CarreraSlice

• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• KUtil (scripted, bundled in Carrera Slice extension)

CBC_3D_I2MConversion

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)

ChangeTracker

• Change Tracker (scripted, bundled in Change Tracker extension)
• Intensity Difference Metric (cli, bundled in Change Tracker extension)

CleaverExtension

• Cleaver CLI (cli, bundled in Cleaver Extension extension)

CMFreg

• Apply Matrix (cli, bundled in CMFreg extension)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Landmark Registration (scripted, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)
• Surface Registration (scripted, bundled in CMFreg extension)

CornerAnnotation

• Corner Annotation (scripted, bundled in Corner Annotation extension)

CurveMaker

• Curve Maker (scripted, bundled in Curve Maker extension)

DiceComputation

• Dice Computation (loadable, bundled in Dice Computation extension)

ErodeDilateLabel

• Dilate Label (cli, bundled in Erode Dilate Label extension)
• Erode Label (cli, bundled in Erode Dilate Label extension)

FastGrowCutEffect

• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

FinslerTractography

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

GelDosimetryAnalysis

• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)

GyroGuide

• Gyro Guide (scripted, bundled in Gyro Guide extension)

IASEM

• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Bin Shrink (cli, bundled in IASEM extension)
• Double Threshold Effect (scripted, bundled in IASEM extension)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)

iGyne

• i Gyne (scripted, bundled in i Gyne extension)

ImageMaker

• Image Maker (cli, bundled in Image Maker extension)

IntensitySegmenter

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

LAScarSegmenter

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

LongitudinalPETCT

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)

MABMIS

• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)

MatlabBridge

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)

MultidimData

• Metafile Importer (loadable, bundled in Multidim Data extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)

NeedleFinder

• Needle Finder (scripted, bundled in Needle Finder extension)

PBNRR

• PBNRR (cli, bundled in PBNRR extension)

PercutaneousApproachAnalysis

• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)

PerkTutor

• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

PETDICOMExtension

• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

PkModeling

• Pk Modeling (cli, bundled in Pk Modeling extension)

PortPlacement

• Port Placement (scripted, bundled in Port Placement extension)

PyDevRemoteDebug

• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)

Reporting

• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
• Reporting (loadable, bundled in Reporting extension)

Scoliosis

• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)

SegmentationAidedRegistration

• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

SlicerToKiwiExporter

• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

SobolevSegmenter

• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

SwissSkullStripper

• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)

TCIABrowser

• TCIABrowser (scripted, bundled in TCIABrowser extension)

ThingiverseBrowser

• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)

TrackerStabilizer

• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

VolumeClip

• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)

WindowLevelEffect

• Window Level Effect (scripted, bundled in Window Level Effect extension)

XNATSlicer

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Extensions by name

45 extensions:

• ABC
• Airway Segmentation
• Carrera Slice
• CBC 3D I2MConversion
• Change Tracker
• Cleaver Extension
• CMFreg
• Corner Annotation
• Curve Maker
• Dice Computation
• Erode Dilate Label
• Fast Grow Cut Effect
• Finsler Tractography
• Gel Dosimetry Analysis
• Gyro Guide
• IASEM
• i Gyne
• Image Maker
• Intensity Segmenter
• LAScar Segmenter
• Longitudinal PETCT
• MABMIS
• Matlab Bridge
• Multidim Data
• Needle Finder
• PBNRR
• Percutaneous Approach Analysis
• Perk Tutor
• PETDICOMExtension
• Pk Modeling
• Port Placement
• Py Dev Remote Debug
• Reporting
• Resection Planner
• Scoliosis
• Segmentation Aided Registration
• Slicer To Kiwi Exporter
• Sobolev Segmenter
• Swiss Skull Stripper
• TCIABrowser
• Thingiverse Browser
• Tracker Stabilizer
• Volume Clip
• Window Level Effect
• XNATSlicer

Extensions by category

20 categories:

• Converters
• Developer Tools
• Editor Effects
• Exporter
• Filtering
  • Morphology
• IGT
• Informatics
• Mesh Generation
• Microscopy
• Multidimensional data
• Quantification
• Radiotherapy
• Registration
• Remote
• Scoliosis
• Segmentation
• Tractography
• Training
• Utilities
• Wizards

Converters

• PETDICOMExtension

Developer Tools

• Image Maker
• Matlab Bridge
• Py Dev Remote Debug

Editor Effects

• Window Level Effect

Exporter

• Slicer To Kiwi Exporter

Filtering

Morphology

• Erode Dilate Label

IGT

• Port Placement
• Gyro Guide
• Corner Annotation
• Percutaneous Approach Analysis
• Needle Finder
• Tracker Stabilizer
• i Gyne
• Resection Planner

Informatics

• Reporting
• Longitudinal PETCT
• TCIABrowser
• Curve Maker

Mesh Generation

• CBC 3D I2MConversion
• Cleaver Extension

Microscopy

• IASEM

Multidimensional data

• Multidim Data

Quantification

• Dice Computation
• Pk Modeling

Radiotherapy

• Gel Dosimetry Analysis

Registration

• CMFreg
• Segmentation Aided Registration
• PBNRR

Remote

• XNATSlicer

Scoliosis

• Scoliosis

Segmentation

• Airway Segmentation
• Swiss Skull Stripper
• Carrera Slice
• LAScar Segmenter
• ABC
• Intensity Segmenter
• MABMIS
• Sobolev Segmenter
• Fast Grow Cut Effect
• Volume Clip

Tractography

• Finsler Tractography

Training

• Perk Tutor

Utilities

• Thingiverse Browser

Wizards

• Change Tracker

Extensions by contributing organization

54 contributing organizations:

• Asclepios INRIA) and Nikos Chrisochoides (CRTC
• Brigham and Women's Hospital
• BWH
• BWH & MGH
• BWH, SPL
• BWH/UAB
• College of Information Engineering, Zhejiang University of Technology, Hangzhou, China
• Crisalix
• CRTC
• Department of Neurosurgery, PLA General Hospital, Beijing, China
• Department of Orthodontics, UNC
• GE
• GE GLobal Research
• GT
• Isomics
• Kitware
• Moka Creative LLC, Washington University in St. Louis
• NIRAL, UNC
• Noware
• Perk Lab at Queen's University
• Perk Lab, Queen's
• Perk Lab, Queen's University
• PMH
• Queen's University
• Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
• SBU
• SCI Institute
• Shiga University of Medical Science, Japan
• Shiga University of Medical Science, Japan, SPL
• SPL
• SPL and BWH
• SPL B&W Harvard
• SRI
• Stony Brook University
• Surgical Planning Lab
• UAB
• UNC
• Univ of Michigan
• University College Cork
• University of Bern
• University of Heidelberg
• University of Iowa
• University of Utah
• Utah
• UWA
• Washington University in St. Louis

Asclepios INRIA) and Nikos Chrisochoides (CRTC

• PBNRR

Brigham and Women's Hospital

• Erode Dilate Label

BWH

• Change Tracker
• Curve Maker
• Dice Computation
• Fast Grow Cut Effect
• Pk Modeling
• Segmentation Aided Registration
• Tracker Stabilizer

BWH & MGH

• Carrera Slice

BWH, SPL

• PETDICOMExtension

BWH/UAB

• Segmentation Aided Registration

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China

• Gyro Guide

Crisalix

• Swiss Skull Stripper

CRTC

• CBC 3D I2MConversion
• PBNRR

Department of Neurosurgery, PLA General Hospital, Beijing, China

• Gyro Guide

Department of Orthodontics, UNC

• Intensity Segmenter

GE

• Pk Modeling

GE GLobal Research

• MABMIS

GT

• Carrera Slice

Isomics

• Carrera Slice
• Finsler Tractography
• Slicer To Kiwi Exporter
• XNATSlicer

Kitware

• Change Tracker
• Image Maker
• Matlab Bridge
• Port Placement
• Slicer To Kiwi Exporter

Moka Creative LLC, Washington University in St. Louis

• XNATSlicer

NIRAL, UNC

• Intensity Segmenter

Noware

• Swiss Skull Stripper

PerkLab at Queen's University

• Py Dev Remote Debug

PerkLab, Queen's

• Multidim Data

PerkLab, Queen's University

• Gel Dosimetry Analysis
• Matlab Bridge
• Scoliosis
• Volume Clip

PMH

• Multidim Data

Queen's University

• Perk Tutor
• Resection Planner

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

• Matlab Bridge

SBU

• LAScar Segmenter

SCI Institute

• Cleaver Extension

Shiga University of Medical Science, Japan

• Corner Annotation

Shiga University of Medical Science, Japan, SPL

• Percutaneous Approach Analysis

SPL

• Change Tracker
• Percutaneous Approach Analysis
• Reporting
• Window Level Effect

SPL and BWH

• TCIABrowser

SPL B&W Harvard

• PBNRR

SRI

• Pk Modeling

Stony Brook University

• Carrera Slice
• Fast Grow Cut Effect

Surgical Planning Lab

• Longitudinal PETCT

UAB

• Carrera Slice
• Fast Grow Cut Effect
• LAScar Segmenter
• Segmentation Aided Registration
• Sobolev Segmenter

UNC

• CMFreg
• MABMIS
• Port Placement

Univ of Michigan

• CMFreg

University College Cork

• Airway Segmentation

University of Bern

• Swiss Skull Stripper

University of Heidelberg

• Longitudinal PETCT

University of Iowa

• PETDICOMExtension

University of Utah

• ABC

Utah

• LAScar Segmenter
• Segmentation Aided Registration

UWA

• Thingiverse Browser

Washington University in St. Louis

• XNATSlicer

Extensions by contributing individual

125 contributing individuals:

• Akila Viswanathan
• Alan Morris (Utah)
• Alex Yarmarkovich (Kitware))
• Alireza Mehrtash (SPL and BWH)
• Allen Tannenbaum (Stony Brook University)
• Andinet Enquobahrie (Kitware)
• Andras Lasso (PerkLab, Queen's University)
• Andre Mastmeyer
• Andrey Fedorov (SPL B&W Harvard)
• Andriy Fedorov (BWH)
• Andriy Kot (CRTC)
• Antonio Damato
• Antonio Tristan-Vega (Isomics)
• Arie Nakhmani (UAB)
• Arnaud Gelas (Crisalix)
• Atsushi Yamada (SUMS)
• Beatriz Paniagua (UNC)
• Bill Lorensen (Noware)
• Bradley Lowekamp (MSC/NLM)
• Brig Bagley (SCI Institute)
• Carl-Fredrik Westin
• Csaba Pinter (PerkLab, Queen's University)
• Dan Marcus (Washington University in St. Louis)
• Danny Perry (Utah)
• Demian Wasssermann
• Dinggang Shen (UNC)
• Ethan Ulrich (Univ. of Iowa)
• Fotis Drakopoulos (CRTC)
• Francois Budin (NIRAL, UNC)
• Franklin King (PerkLab, Queen's University)
• Greg Gardner (Utah)
• Guillaume Pernelle
• Ivan Kolesov (Stony Brook University)
• Jan Egger
• Jayender Jagadeesan (BWH)
• Jean-Christophe Fillion-Robin (Kitware)
• Jennifer Andrea (PerkLab, Queen's University)
• Jiashu Zhang (Department of Neurosurgery, PLA General Hospital, Beijing, China)
• Jim Miller (GE)
• Jonathan Bronson (SCI Institute)
• Josh Cates (Utah)
• Julien Finet (Kitware)
• Junichi Tokuda (BWH)
• Karl Fritscher (BWH & MGH)
• Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)
• Kilian Pohl (UPenn)
• Koichiro Murakami (BWH, SUMS)
• Lauren Barber
• Laurent Chauvin (BWH)
• Liang-Jia Zhu (UAB)
• Liangjia Zhu (Stony Brook University)
• Luis G. Torres (UNC)
• Luping Fang (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• Mahnaz Maddah (SRI)
• Manson Winsauer (UNC)
• Marcel Prastawa (University of Utah)
• Matt Lougheed (PerkLab, Queen's University)
• Mattea Welch (PerkLab, Queen's University)
• Matthew Holden (Queen's University)
• Matthew S. Holden (Queen's University)
• Mauricio Reyes (University of Bern)
• Ming-ching Chang (GE)
• Minjeong Kim (UNC)
• Nabgha Fahrat
• Nicole Aucoin (BWH)
• Nigel Goh (UWA)
• Nikos Chrisochoides (CRTC)
• Olivier Clatz (Asclepios INRIA) and Nikos Chrisochoides (CRTC)
• Pat Marion (Kitware)
• Patricio Vela (Georgia Institute of Technology)
• Paul Mercea (University of Heidelberg)
• Pengdong Xiao (Department of Orthodontics, UNC)
• Peter Black (BWH)
• Peter Karasev (Georgia Tech)
• Peter Savadjiev (Kitware))
• Pietro Nardelli (University College Cork)
• Qing Pan (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• Rick Herrick (Washington University in St. Louis)
• Rob Mac Leod (Utah)
• Ron Kikinis (BWH)
• Ruifeng Chen (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• S
• Sam Song
• Stefan Bauer (University of Bern)
• Steve Pieper (Isomics Inc.)
• Sunil Kumar (Moka Creative, LLC, kumar.sunil.p@gmail.com)
• Sylvain Bouix (BWH)
• Tamas Ungi (PerkLab, Queen's University)
• Thomas Fejes (University of Bern)
• Tina Kapur
• Tobias Penzkofer
• Vinicius Boen (Univ of Michigan)
• Xiaofeng Liu (GE GLobal Research)
• Xiaojun Chen
• Xiaolei Chen (Department of Neurosurgery, PLA General Hospital, Beijing, China)
• y Wells
• Yi Gao (BWH/UAB)
• Yingxuan Zhu (GE)
• Yixun Liu (CRTC)

Akila Viswanathan

• i Gyne
• Needle Finder

Alan Morris

• LAScar Segmenter
• Segmentation Aided Registration

Alex Yarmarkovich

• Finsler Tractography

Alireza Mehrtash

• i Gyne
• Needle Finder
• TCIABrowser

Allen Tannenbaum

• Carrera Slice
• Fast Grow Cut Effect
• LAScar Segmenter
• Segmentation Aided Registration
• Sobolev Segmenter

Andinet Enquobahrie

• Port Placement

Andras Lasso

• Matlab Bridge
• Multidim Data
• Py Dev Remote Debug
• Tracker Stabilizer
• Volume Clip

Andre Mastmeyer

• Needle Finder

Andrey Fedorov

• CBC 3D I2MConversion
• Change Tracker
• Longitudinal PETCT
• PBNRR
• PETDICOMExtension
• Reporting
• TCIABrowser
• Window Level Effect

Andriy Fedorov

• Pk Modeling

Andriy Kot

• PBNRR

Antonio Damato

• i Gyne
• Needle Finder

Antonio Tristan-Vega

• Finsler Tractography

Arie Nakhmani

• Sobolev Segmenter

Arnaud Gelas

• Swiss Skull Stripper

Atsushi Yamada

• Corner Annotation

Beatriz Paniagua

• Intensity Segmenter

Bill Lorensen

• Swiss Skull Stripper

Bradley Lowekamp

• IASEM

Brig Bagley

• Cleaver Extension

Carl-Fredrik Westin

• Finsler Tractography

Csaba Pinter

• Gel Dosimetry Analysis

Dan Marcus

• XNATSlicer

Danny Perry

• LAScar Segmenter
• Segmentation Aided Registration

Demian Wasssermann

• Finsler Tractography

Dinggang Shen

• MABMIS

Ethan Ulrich

• PETDICOMExtension

Fotis Drakopoulos

• CBC 3D I2MConversion
• PBNRR

Francois Budin

• Intensity Segmenter

Franklin King

• Scoliosis

Greg Gardner

• LAScar Segmenter
• Segmentation Aided Registration

Guillaume Pernelle

• i Gyne
• Needle Finder

Ivan Kolesov

• Carrera Slice
• Fast Grow Cut Effect

Jan Egger

• i Gyne
• Needle Finder

Jayender Jagadeesan

• Tracker Stabilizer

Jean-Christophe Fillion-Robin

• Change Tracker
• Matlab Bridge
• Slicer To Kiwi Exporter

Jennifer Andrea

• Gel Dosimetry Analysis

Jiashu Zhang

• Gyro Guide

Jim Miller

• MABMIS
• Pk Modeling

Jonathan Bronson

• Cleaver Extension

Josh Cates

• LAScar Segmenter
• Segmentation Aided Registration

Julien Finet

• Image Maker

Junichi Tokuda

• Curve Maker
• Erode Dilate Label
• Percutaneous Approach Analysis

Karl Fritscher

• Carrera Slice

Kevin Wang

• Matlab Bridge
• Multidim Data

Kilian Pohl

• Change Tracker

Koichiro Murakami

• Percutaneous Approach Analysis

Lauren Barber

• i Gyne
• Needle Finder

Laurent Chauvin

• Dice Computation
• Percutaneous Approach Analysis
• Tracker Stabilizer

Liang-Jia Zhu

• Segmentation Aided Registration

Liangjia Zhu

• Carrera Slice
• Fast Grow Cut Effect
• LAScar Segmenter

Luis G. Torres

• Port Placement

Luping Fang

• Gyro Guide

Mahnaz Maddah

• Pk Modeling

Manson Winsauer

• CMFreg

Marcel Prastawa

• ABC

Matt Lougheed

• Resection Planner
• Volume Clip

Mattea Welch

• Gel Dosimetry Analysis

Matthew Holden

• Multidim Data

Matthew S. Holden

• Perk Tutor

Mauricio Reyes

• Swiss Skull Stripper

Ming-ching Chang

• Pk Modeling

Minjeong Kim

• MABMIS

Nabgha Fahrat

• i Gyne
• Needle Finder

Nicole Aucoin

• Reporting

Nigel Goh

• Thingiverse Browser

Nikos Chrisochoides

• CBC 3D I2MConversion

Olivier Clatz

• PBNRR

Pat Marion

• Slicer To Kiwi Exporter

Patricio Vela

• Carrera Slice

Paul Mercea

• Longitudinal PETCT

Pengdong Xiao

• Intensity Segmenter

Peter Black

• Change Tracker

Peter Karasev

• Carrera Slice

Peter Savadjiev

• Finsler Tractography

Pietro Nardelli

• Airway Segmentation

Qing Pan

• Gyro Guide

Rick Herrick

• XNATSlicer

Rob MacLeod

• LAScar Segmenter
• Segmentation Aided Registration

Ron Kikinis

• Change Tracker
• Fast Grow Cut Effect

Ruifeng Chen

• Gyro Guide

S

• i Gyne
• Needle Finder

Sam Song

• i Gyne
• Needle Finder

Stefan Bauer

• Swiss Skull Stripper

Steve Pieper

• Carrera Slice
• Reporting
• Slicer To Kiwi Exporter
• Window Level Effect
• XNATSlicer

Sunil Kumar

• XNATSlicer

Sylvain Bouix

• Segmentation Aided Registration

Tamas Ungi

• Perk Tutor
• Scoliosis

Thomas Fejes

• Swiss Skull Stripper

Tina Kapur

• i Gyne
• Needle Finder

Tobias Penzkofer

• i Gyne
• Needle Finder

Vinicius Boen

• CMFreg

Xiaofeng Liu

• MABMIS

Xiaojun Chen

• i Gyne
• Needle Finder

Xiaolei Chen

• Gyro Guide

y Wells

• i Gyne
• Needle Finder

Yi Gao

• Carrera Slice
• Fast Grow Cut Effect
• i Gyne
• LAScar Segmenter
• Needle Finder
• Segmentation Aided Registration

Yingxuan Zhu

• Pk Modeling

Yixun Liu

• CBC 3D I2MConversion
• PBNRR

Modules by name

156 modules:

• ABC (cli, bundled in ABC extension)
• ACPCTransform (cli, built-in)
• Add Scalar Volumes (cli, built-in)
• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
• Annotations (loadable, built-in)
• Apply Matrix (cli, bundled in CMFreg extension)
• Bin Shrink (cli, bundled in IASEM extension)
• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• BRAINSDemon Warp (cli, built-in)
• BRAINSDWICleanup (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSLabel Stats (cli, built-in)
• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Cast Scalar Volume (cli, built-in)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Checker Board Filter (cli, built-in)
• Cleaver CLI (cli, bundled in Cleaver Extension extension)
• Colors (loadable, built-in)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Create DICOMSeries (cli, built-in)
• Crop Volume (loadable, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Curve Maker (scripted, bundled in Curve Maker extension)
• Data (loadable, built-in)
• Data Probe (scripted, built-in)
• Data Store (loadable, built-in)
• Dice Computation (loadable, bundled in Dice Computation extension)
• DICOM (scripted, built-in)
• DICOM2Full Brain Tractography (scripted, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Dilate Label (cli, bundled in Erode Dilate Label extension)
• Downsize (cli, bundled in CMFreg extension)
• DWIConvert (cli, built-in)
• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• Editor (scripted, built-in)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• EMSegment Quick (loadable, built-in)
• EMSegment Transform To New Format (cli, built-in)
• Endoscopy (scripted, built-in)
• Erode Label (cli, bundled in Erode Dilate Label extension)
• Extract Skeleton (cli, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• Fiber Bundle Label Select (cli, built-in)
• Fiber Bundle To Label Map (scripted, built-in)
• Fiducial Registration (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Gaussian Blur Image Filter (cli, built-in)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Growing (cli, bundled in CMFreg extension)
• Gyro Guide (scripted, bundled in Gyro Guide extension)
• Histogram Matching (cli, built-in)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)
• i Gyne (scripted, bundled in i Gyne extension)
• Image Label Combine (cli, built-in)
• Intensity Difference Metric (cli, bundled in Change Tracker extension)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• KUtil (scripted, bundled in Carrera Slice extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Label Map Smoothing (cli, built-in)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Label Statistics (scripted, built-in)
• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
• Landmark Registration (scripted, bundled in CMFreg extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• Markups (loadable, built-in)
• Mask Creation (cli, bundled in CMFreg extension)
• Mask Scalar Volume (cli, built-in)
• Median Image Filter (cli, built-in)
• Merge Models (cli, built-in)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• Metafile Importer (loadable, bundled in Multidim Data extension)
• Model Maker (cli, built-in)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Non Growing (cli, bundled in CMFreg extension)
• Open IGTLink IF (loadable, built-in)
• Orient Scalar Volume (cli, built-in)
• PBNRR (cli, bundled in PBNRR extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Perform Metric Test (cli, built-in)
• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Port Placement (scripted, bundled in Port Placement extension)
• Probe Volume With Model (cli, built-in)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Reformat (loadable, built-in)
• Reporting (loadable, bundled in Reporting extension)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)
• Robust Statistics Segmenter (cli, built-in)
• Sample Data (scripted, built-in)
• Scene Views (loadable, built-in)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)
• Simple Filters (scripted, built-in)
• Simple Region Growing Segmentation (cli, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Subject Hierarchy (loadable, built-in)
• Subtract Scalar Volumes (cli, built-in)
• Surface Registration (scripted, bundled in CMFreg extension)
• Surface Toolbox (scripted, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
• Threshold Scalar Volume (cli, built-in)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
• Tractography Display (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)
• Tractography Label Map Seeding (cli, built-in)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• VBRAINSDemon Warp (cli, built-in)
• Vector To Scalar Volume (scripted, built-in)
• View Controllers (loadable, built-in)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)
• Voting Binary Hole Filling Image Filter (cli, built-in)
• Welcome (loadable, built-in)
• Window Level Effect (scripted, bundled in Window Level Effect extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)
• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Modules by category

30 categories:

• BRAINS
  • Label Statistics
• CMF Registration
  • Voxelbase Registration
• Converters
• Developer Tools
  • DICOM Plugins
  • Editor Extensions
  • Matlab
• Diffusion
  • Diffusion Data Conversion
  • Diffusion Tensor Images
  • Diffusion Weighted Images
  • Tractography
• Editor Effects
• Endoscopy
• Examples
• Exporter
• Filtering
  • Arithmetic
  • Denoising
  • Morphology
• IGT
• Informatics
• Legacy
  • Converters
  • Diffusion
    • Denoising
    • Diffusion Data Conversion
  • Filtering
  • Registration
  • Work in Progress
    • Diffusion Tensor
      • Test
• Mesh Generation
• Mesh Generation
• Microscopy
• Multidimensional data
• Multi Volume Support
• Perk Tutor
• Quantification
  • Change Quantification
• Registration
  • Specialized
• Segmentation
  • Specialized
• Slicelets
• Surface Models
• Testing
  • Test Cases
• Unspecified
• Utilities
  • BRAINS
• Wizards
• Work in Progress
  • Converters
  • Informatics
    • Test Cases
• XNATSlicer

BRAINS

LabelStatistics

• BRAINSLabel Stats

CMF Registration

• Apply Matrix
• Landmark Registration
• Surface Registration
• Label Extraction
• Label Addition
• Downsize

Voxelbase Registration

• Growing
• Mask Creation
• Non Growing

Converters

• Vector To Scalar Volume
• Crop Volume
• Create DICOMSeries
• Orient Scalar Volume

Developer Tools

• Event Broker
• Double Arrays
• Py Dev Remote Debug
• Cameras
• Extension Wizard
• Execution Model Tour
• Image Maker

DICOM Plugins

• DICOMRWVMPlugin
• DICOMLongitudinal PETCTPlugin
• Multi Volume Importer Plugin
• DICOMPETSUVPlugin
• DICOMDiffusion Volume Plugin
• DICOMSegmentation Plugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin

Editor Extensions

• Binary Watershed Effect
• Fast Grow Cut Effect
• Carrera Slice Effect
• Double Threshold Effect

Matlab

• Matlab Module Generator
• Matlab Commander

Diffusion

• Tractography Display
• DICOM2Full Brain Tractography

Diffusion Data Conversion

• DWIConvert

Diffusion Tensor Images

• Resample DTIVolume
• Diffusion Tensor Scalar Measurements
• Tractography Label Map Seeding
• Tractography Interactive Seeding

Diffusion Weighted Images

• DWIRician LMMSEFilter
• DWIJoint Rician LMMSEFilter
• DWITo DTIEstimation
• Finsler Backtracing
• Resample Scalar Vector DWIVolume
• Finsler Tractography
• Diffusion Weighted Volume Masking

Tractography

• Fiber Bundle To Label Map
• Fiber Bundle Label Select

Editor Effects

• Window Level Effect

Endoscopy

• Endoscopy

Examples

• Carrera Slice
• Fast Grow Cut
• Fast Grow Cut Segmenter
• Segmentation Aided Registration

Exporter

• Slicer To Kiwi Exporter

Filtering

• Extract Skeleton
• Threshold Scalar Volume
• N4ITKBias Field Correction
• Simple Filters
• Image Label Combine
• Voting Binary Hole Filling Image Filter
• Histogram Matching
• Checker Board Filter

Arithmetic

• Multiply Scalar Volumes
• Add Scalar Volumes
• Cast Scalar Volume
• Subtract Scalar Volumes
• Mask Scalar Volume

Denoising

• Gradient Anisotropic Diffusion
• Median Image Filter
• Gaussian Blur Image Filter
• Curvature Anisotropic Diffusion

Morphology

• Grayscale Fill Hole Image Filter
• Erode Label
• Dilate Label
• Grayscale Grind Peak Image Filter

IGT

• Percutaneous Approach Analysis
• Port Placement
• Open IGTLink IF
• Needle Finder
• Tracker Stabilizer
• Gyro Guide
• i Gyne
• Corner Annotation

Informatics

• Annotations
• Markups
• Units
• DICOM
• Sample Data
• Subject Hierarchy
• Data
• Colors
• Curve Maker
• TCIABrowser

Legacy

Converters

• BSpline To Deformation Field

Diffusion

Denoising

• DWIUnbiased Non Local Means Filter

Diffusion Data Conversion

• DTIimport
• DTIexport

Filtering

• Otsu Threshold Image Filter
• Resample Scalar Volume

Registration

• Test Grid Transform Registration
• Expert Automated Registration

Work in Progress

Diffusion Tensor

Test

• Diffusion Tensor Test

Mesh Generation

• Cleaver CLI

MeshGeneration

• Body Centric Cubic Mesh
• Mesh Compression

Microscopy

• Bin Shrink
• Label Object Statistics
• Spacing Aware Curvature Diffusion
• IASEMImport Series
• IASEMImport

Multidimensional data

• Metafile Importer
• Sequence Browser
• Sequences

MultiVolume Support

• Multi Volume Explorer
• Multi Volume Importer

Perk Tutor

• Python Metrics Calculator
• Workflow Segmentation
• Transform Recorder
• Perk Evaluator

Quantification

• PETStandard Uptake Value Computation
• SUVFactor Calculator
• Spinal Curvature Measurement
• Pk Modeling
• Label Statistics
• PETSUVImage Maker
• Dice Computation
• Data Probe

ChangeQuantification

• Intensity Difference Metric

Registration

• BRAINSResample
• Transforms
• BRAINSResize
• Perform Metric Test
• BRAINSFit
• PBNRR

Specialized

• ACPCTransform
• Fiducial Registration
• VBRAINSDemon Warp
• BRAINSDemon Warp
• Reformat

Segmentation

• Editor
• EMSegment Quick
• Simple Region Growing Segmentation
• EMSegment
• Volume Clip With Roi
• Swiss Skull Stripper
• Airway Segmentation CLI
• LAScar Segmenter
• Sobolev Segmenter
• Volume Clip With Model
• IGR3D MABMIS Testing
• ABC
• IGR3D MABMIS Training
• Intensity Segmenter

Specialized

• EMSegment Command Line
• Robust Statistics Segmenter
• BRAINSROIAuto

Slicelets

• Gel Dosimetry Analysis Algo

Surface Models

• Model To Label Map
• Merge Models
• Surface Toolbox
• Probe Volume With Model
• Grayscale Model Maker
• Label Map Smoothing
• Model Maker

Testing

• Self Tests
• CLIROITest
• CLI4Test
• Threshold Threading Test
• Scoliosis Monitoring
• Performance Tests
• Slicer MRBTest

TestCases

• Slice Link Logic
• Atlas Tests
• RSNAQuant Tutorial
• Volume Rendering Scene Close
• test tractography display
• Subject Hierarchy Core Plugins Self Test
• slicer Close Crash Bug2590
• Subject Hierarchy Generic Self Test
• Charting
• Scene Performance
• Markups In Compare Viewers Self Test
• fiber visibility crash2438
• scene Import2428
• RSNAVis Tutorial
• JRC2013Vis
• RSNA2012Prostate Demo
• Add Many Markups Fiducial Test
• Neurosurgical Planning Tutorial Markups Self Test
• Colors Scalar Bar Self Test
• Markups In Views Self Test
• Change Tracker Self Test
• Fiducial Layout Switch Bug1914
• View Controllers Slice Interpolation Bug1926
• Slicer4Minute
• label Toggle Bug2049

Unspecified

• BRAINSDWICleanup

Utilities

• Thingiverse Browser
• EMSegment Transform To New Format
• Data Store

BRAINS

• BRAINSTransform Convert

Wizards

• Compare Volumes
• Change Tracker

Work in Progress

• Longitudinal PETCT

Converters

• Label To DICOMSEGConverter

Informatics

• Reporting

TestCases

• Reporting Self Test
• Label To DICOMSEGConverter Self Test

XNATSlicer

• Xnat Slicer

Modules by contributing organization

62 contributing organizations:

• Asclepios INRIA
• AZE R&D
• Brigham and Women's Hospital
• BWH
• BWH, SPL
• BWH, SUMS
• BWH/UAB
• College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China
• CRTC
• gatech
• GE
• Georgia Institute of Technology
• Georgia Tech
• IBM
• Isomics
• Isomics Inc.
• Isomics, Inc.
• Isomics, pieper@isomics.com
• Kitware
• Kitware)
• MGH
• Moka Creative, LLC, kumar.sunil.p@gmail.com
• MSC/NLM
• Noware
• Orobix
• Perk Lab at Queen's University
• Perk Lab, Queen's
• Perk Lab, Queen's University
• PMH
• Queen's
• Queen's University
• Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
• SAIC-Frederick, NCI-Frederick
• SBU
• SCI Institute
• Shiga University of Medical Science, Japan, SPL
• SNR
• SPL
• SPL B&W Harvard
• SPL, BWH
• SPL, BWH, UPenn
• Stony Brook University
• SUMS
• Surgical Planning Lab
• UAB
• Uiowa
• UIowa
• UNC
• Univ of Michigan
• Univ. of Iowa
• University College Cork
• University of Alabama Birmingham
• University of Heidelberg
• University of Iowa
• University of Iowa) and Andrey Fedorov (SPL
• UPenn
• Utah
• UVa
• UWA
• Wash U-St. Louis, dmarcus@wustl.edu
• while at GE

Asclepios INRIA

• PBNRR (cli, bundled in PBNRR extension)

AZE R&D

• JRC2013Vis

Brigham and Women's Hospital

• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Surface Toolbox (scripted, built-in)
• test tractography display

BWH

• Add Many Markups Fiducial Test
• Change Tracker Self Test
• Colors Scalar Bar Self Test
• Curve Maker (scripted, bundled in Curve Maker extension)
• Dice Computation (loadable, bundled in Dice Computation extension)
• DICOMRWVMPlugin
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• Fiducial Layout Switch Bug1914
• Markups (loadable, built-in)
• Markups In Compare Viewers Self Test
• Markups In Views Self Test
• Neurosurgical Planning Tutorial Markups Self Test
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Volume Rendering Scene Close (scripted, built-in)
• Window Level Effect (scripted, bundled in Window Level Effect extension)

BWH, SPL

• Crop Volume (loadable, built-in)

BWH, SUMS

• Corner Annotation (scripted, bundled in Corner Annotation extension)

BWH/UAB

• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China

• Gyro Guide (scripted, bundled in Gyro Guide extension)

CRTC

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

gatech

• Robust Statistics Segmenter (cli, built-in)

GE

• Add Scalar Volumes (cli, built-in)
• Charting (scripted, built-in)
• Checker Board Filter (cli, built-in)
• Create DICOMSeries (cli, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Diffusion Tensor Test (cli, built-in)
• DWIConvert (cli, built-in)
• Execution Model Tour (cli, built-in)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Histogram Matching (cli, built-in)
• Label Map Smoothing (cli, built-in)
• Median Image Filter (cli, built-in)
• Model Maker (cli, built-in)
• Model To Label Map (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Orient Scalar Volume (cli, built-in)
• Otsu Threshold Image Filter (cli, built-in)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Resample Scalar Volume (cli, built-in)
• Simple Region Growing Segmentation (cli, built-in)
• Slice Link Logic (scripted, built-in)
• Slicer4Minute (scripted, built-in)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Subtract Scalar Volumes (cli, built-in)
• View Controllers (loadable, built-in)
• View Controllers Slice Interpolation Bug1926
• Voting Binary Hole Filling Image Filter (cli, built-in)

Georgia Institute of Technology

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Georgia Tech

• Carrera Slice (loadable, bundled in Carrera Slice extension)

IBM

• Annotations (loadable, built-in)

Isomics

• Atlas Tests
• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Data (loadable, built-in)
• Data Probe (scripted, built-in)
• DICOM (scripted, built-in)
• Editor (scripted, built-in)
• Endoscopy (scripted, built-in)
• fiber visibility crash2438
• Fiber Bundle To Label Map (scripted, built-in)
• Label Statistics (scripted, built-in)
• label Toggle Bug2049
• Landmark Registration (scripted, bundled in CMFreg extension)
• Models (loadable, built-in)
• Performance Tests
• Reporting (loadable, bundled in Reporting extension)
• RSNA2012Prostate Demo
• RSNAQuant Tutorial
• RSNAVis Tutorial
• Sample Data (scripted, built-in)
• scene Import2428
• Self Tests
• Simple Filters (scripted, built-in)
• slicer Close Crash Bug2590
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Tractography Interactive Seeding (loadable, built-in)
• Transforms (loadable, built-in)
• Vector To Scalar Volume (scripted, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)

Isomics Inc.

• DICOMDiffusion Volume Plugin
• DICOMLongitudinal PETCTPlugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin
• Slicer MRBTest
• Threshold Threading Test

Isomics, Inc.

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Isomics, pieper@isomics.com

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Kitware

• Cameras (loadable, built-in)
• Colors (loadable, built-in)
• Data (loadable, built-in)
• Data Store (loadable, built-in)
• Double Arrays (loadable, built-in)
• Event Broker
• Expert Automated Registration (cli, built-in)
• Extension Wizard (scripted, built-in)
• Extract Skeleton (cli, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• fiber visibility crash2438
• Fiducial Registration (cli, built-in)
• Gaussian Blur Image Filter (cli, built-in)
• Image Maker (cli, bundled in Image Maker extension)
• label Toggle Bug2049
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Models (loadable, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Port Placement (scripted, bundled in Port Placement extension)
• Reformat (loadable, built-in)
• Sample Data (scripted, built-in)
• Scene Performance (scripted, built-in)
• Simple Filters (scripted, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Threshold Scalar Volume (cli, built-in)
• Tractography Display (loadable, built-in)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)
• Welcome (loadable, built-in)

Kitware)

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

MGH

• Pk Modeling (cli, bundled in Pk Modeling extension)

Moka Creative, LLC, kumar.sunil.p@gmail.com

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

MSC/NLM

• Label Object Statistics (scripted, bundled in IASEM extension)
• Simple Filters (scripted, built-in)

Noware

• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)

Orobix

• Surface Toolbox (scripted, built-in)

PerkLab at Queen's University

• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)

PerkLab, Queen's

• Metafile Importer (loadable, bundled in Multidim Data extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)
• Transforms (loadable, built-in)

PerkLab, Queen's University

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)

PMH

• Colors Scalar Bar Self Test
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)

Queen's

• Data (loadable, built-in)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Subject Hierarchy (loadable, built-in)
• Subject Hierarchy Core Plugins Self Test
• Subject Hierarchy Generic Self Test

Queen's University

• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)

SAIC-Frederick, NCI-Frederick

• Volume Rendering (loadable, built-in)

SBU

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

SCI Institute

• Cleaver CLI (cli, bundled in Cleaver Extension extension)

Shiga University of Medical Science, Japan, SPL

• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)

SNR

• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

SPL

• DICOM2Full Brain Tractography (scripted, built-in)
• Label To DICOMSEGConverter Self Test
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Reporting Self Test
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

SPL B&W Harvard

• PBNRR (cli, bundled in PBNRR extension)

SPL, BWH

• ACPCTransform (cli, built-in)
• Annotations (loadable, built-in)
• BSpline To Deformation Field (cli, built-in)
• Cast Scalar Volume (cli, built-in)
• Colors (loadable, built-in)
• Data (loadable, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• DTIexport (cli, built-in)
• DTIimport (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• Fiducial Registration (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Image Label Combine (cli, built-in)
• Mask Scalar Volume (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Probe Volume With Model (cli, built-in)
• Reporting (loadable, bundled in Reporting extension)
• Robust Statistics Segmenter (cli, built-in)
• Scene Views (loadable, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Test Grid Transform Registration (cli, built-in)
• Threshold Scalar Volume (cli, built-in)
• Tractography Label Map Seeding (cli, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)
• Welcome (loadable, built-in)

SPL, BWH, UPenn

• Merge Models (cli, built-in)

Stony Brook University

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

SUMS

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Surgical Planning Lab

• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)

UAB

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

Uiowa

• DWIConvert (cli, built-in)

UIowa

• DWIConvert (cli, built-in)

UNC

• DWIRician LMMSEFilter (cli, built-in)
• Extract Skeleton (cli, built-in)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• Port Placement (scripted, bundled in Port Placement extension)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)

Univ of Michigan

• Surface Registration (scripted, bundled in CMFreg extension)

Univ. of Iowa

• DICOMPETSUVPlugin
• DICOMRWVMPlugin

University College Cork

• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)

University of Alabama Birmingham

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

University of Heidelberg

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

University of Iowa

• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

University of Iowa) and Andrey Fedorov (SPL

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

UPenn

• Annotations (loadable, built-in)
• EMSegment (loadable, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Scene Views (loadable, built-in)

Utah

• Label Map Smoothing (cli, built-in)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

UVa

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)

UWA

• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)

WashU-St. Louis, dmarcus@wustl.edu

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

while at GE

• Pk Modeling (cli, bundled in Pk Modeling extension)

Modules by contributing individual

148 contributing individuals:

• Akila Viswanathan
• Alan Morris (Utah)
• Alex Yarmakovich (Isomics)
• Alex Yarmarkovich (Kitware))
• Ali Ghayoor
• Alireza Mehrtash (SPL and BWH)
• Allen Tannenbaum (Stony Brook University)
• Analysis Laboratory
• Andinet Enquobahrie (Kitware)
• Andras Lasso (PerkLab, Queen's University)
• Andreas Freudling (SPL, BWH)
• Andrey Fedorov (SPL B&W Harvard)
• Andriy Kot (CRTC)
• Anonymous
• Antonio Damato
• Antonio Tristan Vega (UVa)
• Arie Nakhmani (UAB)
• Atsushi Yamada (SUMS)
• Beatriz Paniagua from Department of Orthodontics (UNC)
• Benjamin Long (Kitware)
• Bill Lorensen (Noware)
• Brad Davis
• Bradley Lowekamp (MSC/NLM)
• BWH
• Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez (Kitware))
• Casey B Goodlett (Kitware)
• Charles Marion (Kitware)
• Csaba Pinter (PerkLab, Queen's University)
• Dan Marcus (Washington University in St. Louis)
• Daniel Blezek (GE)
• Daniel Haehn (UPenn)
• Danny Perry (Utah)
• Demian Wassermann (Brigham and Women's Hospital)
• Dinggang Shen (UNC)
• Dirk Padfield (GE)
• Dominik Meier (SPL, BWH)
• Ethan Ulrich (Univ. of Iowa)
• ez (UVa)
• Fotis Drakopoulos (CRTC)
• Francois Budin (NIRAL, UNC)
• Franklin King (PerkLab, Queen's University)
• Greg Gardner (Utah)
• Greg Harris
• Guido Gerig (UNC)
• Guillaume Pernelle
• Hans J. Johnson
• Hans Johnson (UIowa)
• hans-johnson -at- uiowa.edu
• http://www.psychiatry.uiowa.edu
• Ivan Kolesov (Stony Brook University)
• Jan Egger
• Jayender Jagadeesan (BWH)
• Jean-Baptiste Berger (Kitware)
• Jean-Christophe Fillion-Robin (Kitware)
• Jim Miller (GE)
• Johan Andruejol (Kitware)
• John Evans (MGH)
• Jonathan Bronson (SCI Institute)
• Josh Cates (Utah)
• Joy Matsui (UIowa)
• Julien Finet (Kitware)
• Julien Jomier (Kitware)
• Junichi Tokuda (BWH)
• Kent Williams (UIowa)
• Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)
• Kilian Pohl (UPenn)
• Koichiro Murakami (BWH, SUMS)
• Lauren Barber
• Lauren O'Donnell (SPL, BWH)
• Laurent Chauvin (BWH)
• Liang-Jia Zhu (UAB)
• Liangjia Zhu (Stony Brook University)
• Luca Antiga (Orobix)
• Luis G. Torres (UNC)
• Luping Fang (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• Marc Niethammer (UNC)
• Marcel Prastawa prastawa@sci.utah.edu
• Mark Scully (Uiowa)
• Markus Van Tol (University of Iowa) and Andrey Fedorov (SPL)
• Martin Styner (UNC)
• Mason Winsauer
• Matt Lougheed (PerkLab, Queen's University)
• Matthew Holden (Queen's University)
• Matthew S. Holden (Queen's University)
• Matthew Woehlke (Kitware)
• Michael Jeulin-Lagarrigue (Kitware)
• Minjeong Kim (UNC)
• Nabgha Fahrat
• Neuro Image Resarch
• Nicholas Herlambang (AZE R&D)
• Nick Tustison (UPenn)
• Nicole Aucoin (BWH)
• Nigel Goh (UWA)
• Nikos Chrisochoides (CRTC)
• Olivier Clatz (Asclepios INRIA) and Nikos Chrisochoides (CRTC)
• Pat Marion (Kitware)
• Patricio Vela (Georgia Institute of Technology)
• Paul Mercea (University of Heidelberg)
• Pengdong Xiao (Department of Orthodontics, UNC)
• Peter Black (BWH)
• Peter Karasev (Georgia Tech)
• Peter Savadjiev (Kitware))
• Pierre Seroul (UNC)
• Pietro Nardelli (University College Cork)
• Polina Goll
• Qing Pan (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• Raul San Jose (SPL, BWH)
• Rob Mac Leod (Utah)
• Ron Kikinis (BWH)
• Ross Whitaker (Utah)
• Ruifeng Chen (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• S
• Sam Song
• Santiago Aja Fern (UVa)
• Sebastien Barré (Kitware)
• Sebastien Barre
• Shigeyuki Naka (SUMS)
• Soichiro Tani (SUMS)
• Sonia Pujol (SPL, BWH)
• Stephen Aylward (Kitware)
• Stephen R Aylward (Kitware)
• Steve Pieper (Isomics Inc.)
• Sunil Kumar (Moka Creative, LLC, kumar.sunil.p@gmail.com)
• Sylvain Bouix (BWH)
• Tamas Ungi (PerkLab, Queen's University)
• the University of North Carolina at Chapel Hill (UNC)
• Tina Kapur
• Tobias Penzkofer
• Tohru Tani (SUMS)
• UNC Medical School
• Uof M School Of Dentistry
• Uof M School of Dentistry
• Vince Magnotta (UIowa)
• Vincent A. Magnotta
• Vincent Magnotta
• Vinicius Boen (Univ of Michigan)
• Wendy Plesniak (SPL, BWH)
• Xiaodong Tao (GE)
• Xiaofeng Liu (GE GLobal Research)
• Xiaojun Chen
• y Wells
• Yanling Liu (SAIC-Frederick, NCI-Frederick)
• Yi Gao (BWH/UAB)
• Yinglin Lee (SPL, BWH)
• Yingxuan Zhu (GE)
• Yixun Liu (CRTC)
• Yong Zhang (IBM)
• Yumin Yuan

Akila Viswanathan

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Alan Morris

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Alex Yarmakovich

• Models (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)

Alex Yarmarkovich

• Data (loadable, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Image Label Combine (cli, built-in)
• Transforms (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)

Ali Ghayoor

• BRAINSTransform Convert (cli, built-in)
• Perform Metric Test (cli, built-in)

Alireza Mehrtash

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)

Allen Tannenbaum

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Robust Statistics Segmenter (cli, built-in)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

Analysis Laboratory

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Andinet Enquobahrie

• Port Placement (scripted, bundled in Port Placement extension)

Andras Lasso

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Metafile Importer (loadable, bundled in Multidim Data extension)
• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)
• Transforms (loadable, built-in)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)

Andreas Freudling

• Volume Rendering (loadable, built-in)

Andrey Fedorov

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• BSpline To Deformation Field (cli, built-in)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Change Tracker Self Test
• Crop Volume (loadable, built-in)
• DICOMRWVMPlugin
• DICOMSegmentation Plugin
• Intensity Difference Metric (cli, bundled in Change Tracker extension)
• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
• Label To DICOMSEGConverter Self Test
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Multi Volume Importer Plugin
• N4ITKBias Field Correction (cli, built-in)
• PBNRR (cli, bundled in PBNRR extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Reporting (loadable, bundled in Reporting extension)
• Reporting Self Test
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Window Level Effect (scripted, bundled in Window Level Effect extension)

Andriy Kot

• PBNRR (cli, bundled in PBNRR extension)

Anonymous

• CLIROITest (cli, built-in)
• EMSegment Transform To New Format (cli, built-in)

Antonio Damato

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Antonio Tristan Vega

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

Arie Nakhmani

• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

Atsushi Yamada

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Beatriz Paniagua from Department of Orthodontics

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Benjamin Long

• Sample Data (scripted, built-in)

Bill Lorensen

• Add Scalar Volumes (cli, built-in)
• Checker Board Filter (cli, built-in)
• Create DICOMSeries (cli, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Diffusion Tensor Test (cli, built-in)
• Execution Model Tour (cli, built-in)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Histogram Matching (cli, built-in)
• Median Image Filter (cli, built-in)
• Model Maker (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Orient Scalar Volume (cli, built-in)
• Otsu Threshold Image Filter (cli, built-in)
• Resample Scalar Volume (cli, built-in)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Subtract Scalar Volumes (cli, built-in)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• Voting Binary Hole Filling Image Filter (cli, built-in)

Brad Davis

• EMSegment Command Line (cli, built-in)

Bradley Lowekamp

• Bin Shrink (cli, bundled in IASEM extension)
• Double Threshold Effect (scripted, bundled in IASEM extension)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Simple Filters (scripted, built-in)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)

BWH

• DICOMSegmentation Plugin
• Multi Volume Importer Plugin

Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

Casey B Goodlett

• Expert Automated Registration (cli, built-in)
• Fiducial Registration (cli, built-in)

Charles Marion

• Data Store (loadable, built-in)

Csaba Pinter

• Data (loadable, built-in)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Subject Hierarchy (loadable, built-in)
• Subject Hierarchy Core Plugins Self Test
• Subject Hierarchy Generic Self Test

Dan Marcus

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Daniel Blezek

• Execution Model Tour (cli, built-in)

Daniel Haehn

• Annotations (loadable, built-in)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• Merge Models (cli, built-in)
• Scene Views (loadable, built-in)

Danny Perry

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Demian Wassermann

• DICOM2Full Brain Tractography (scripted, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Fiber Bundle Label Select (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• test tractography display
• Tractography Label Map Seeding (cli, built-in)

Dinggang Shen

• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)

Dirk Padfield

• Label Map Smoothing (cli, built-in)

Dominik Meier

• Fiducial Registration (cli, built-in)

Ethan Ulrich

• DICOMPETSUVPlugin
• DICOMRWVMPlugin
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

ez

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)

Fotis Drakopoulos

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

Francois Budin

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)

Franklin King

• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Transforms (loadable, built-in)

Greg Gardner

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Greg Harris

• BRAINSDemon Warp (cli, built-in)
• BRAINSResample (cli, built-in)
• VBRAINSDemon Warp (cli, built-in)

Guido Gerig

• Extract Skeleton (cli, built-in)

Guillaume Pernelle

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Hans J. Johnson

• BRAINSDemon Warp (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• VBRAINSDemon Warp (cli, built-in)

Hans Johnson

• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• DWIConvert (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

hans-johnson -at- uiowa.edu

• BRAINSFit (cli, built-in)
• BRAINSROIAuto (cli, built-in)

http://www.psychiatry.uiowa.edu

• BRAINSFit (cli, built-in)
• BRAINSROIAuto (cli, built-in)

Ivan Kolesov

• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

Jan Egger

• i Gyne (scripted, bundled in i Gyne extension)

Jayender Jagadeesan

• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

Jean-Baptiste Berger

• Data Store (loadable, built-in)

Jean-Christophe Fillion-Robin

• CLI4Test
• Data Store (loadable, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• fiber visibility crash2438
• label Toggle Bug2049
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Sample Data (scripted, built-in)
• Simple Filters (scripted, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Transforms (loadable, built-in)
• View Controllers (loadable, built-in)
• Welcome (loadable, built-in)

Jim Miller

• Charting (scripted, built-in)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Simple Region Growing Segmentation (cli, built-in)
• Slice Link Logic (scripted, built-in)
• Slicer4Minute (scripted, built-in)
• View Controllers (loadable, built-in)
• View Controllers Slice Interpolation Bug1926

Johan Andruejol

• Units (loadable, built-in)

John Evans

• Pk Modeling (cli, bundled in Pk Modeling extension)

Jonathan Bronson

• Cleaver CLI (cli, bundled in Cleaver Extension extension)

Josh Cates

• Label Map Smoothing (cli, built-in)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Joy Matsui

• DWIConvert (cli, built-in)

Julien Finet

• Cameras (loadable, built-in)
• Colors (loadable, built-in)
• Data (loadable, built-in)
• Double Arrays (loadable, built-in)
• Event Broker
• Image Maker (cli, bundled in Image Maker extension)
• Models (loadable, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Scene Performance (scripted, built-in)
• Threshold Scalar Volume (cli, built-in)
• Tractography Display (loadable, built-in)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)

Julien Jomier

• Gaussian Blur Image Filter (cli, built-in)

Junichi Tokuda

• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Curve Maker (scripted, bundled in Curve Maker extension)
• Dilate Label (cli, bundled in Erode Dilate Label extension)
• Erode Label (cli, bundled in Erode Dilate Label extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)

Kent Williams

• BRAINSDWICleanup (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• DWIConvert (cli, built-in)

Kevin Wang

• Colors Scalar Bar Self Test
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)

Kilian Pohl

• Annotations (loadable, built-in)
• Change Tracker (scripted, bundled in Change Tracker extension)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• Scene Views (loadable, built-in)

Koichiro Murakami

• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)

Lauren Barber

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Lauren O'Donnell

• Fiber Bundle Label Select (cli, built-in)
• Probe Volume With Model (cli, built-in)

Laurent Chauvin

• Curve Maker (scripted, bundled in Curve Maker extension)
• Dice Computation (loadable, bundled in Dice Computation extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

Liang-Jia Zhu

• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Liangjia Zhu

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

Luca Antiga

• Surface Toolbox (scripted, built-in)

Luis G. Torres

• Port Placement (scripted, bundled in Port Placement extension)

Luping Fang

• Gyro Guide (scripted, bundled in Gyro Guide extension)

Marc Niethammer

• DWIRician LMMSEFilter (cli, built-in)

Marcel Prastawa prastawa@sci.utah.edu

• ABC (cli, bundled in ABC extension)

Mark Scully

• DWIConvert (cli, built-in)

Markus Van Tol

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

Martin Styner

• Extract Skeleton (cli, built-in)

Mason Winsauer

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Matt Lougheed

• Volume Clip With Model (scripted, bundled in Volume Clip extension)

Matthew Holden

• Metafile Importer (loadable, bundled in Multidim Data extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)

Matthew S. Holden

• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

Matthew Woehlke

• Extension Wizard (scripted, built-in)

Michael Jeulin-Lagarrigue

• Reformat (loadable, built-in)

Minjeong Kim

• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)

Nabgha Fahrat

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Neuro Image Resarch

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Nicholas Herlambang

• JRC2013Vis

Nick Tustison

• N4ITKBias Field Correction (cli, built-in)

Nicole Aucoin

• ACPCTransform (cli, built-in)
• Add Many Markups Fiducial Test
• Annotations (loadable, built-in)
• Cast Scalar Volume (cli, built-in)
• Colors (loadable, built-in)
• Colors Scalar Bar Self Test
• Data (loadable, built-in)
• Fiducial Layout Switch Bug1914
• Grayscale Model Maker (cli, built-in)
• Markups (loadable, built-in)
• Markups In Compare Viewers Self Test
• Markups In Views Self Test
• Mask Scalar Volume (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Neurosurgical Planning Tutorial Markups Self Test
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Reporting (loadable, bundled in Reporting extension)
• Scene Views (loadable, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Threshold Scalar Volume (cli, built-in)
• Volume Rendering Scene Close (scripted, built-in)
• Volumes (loadable, built-in)

Nigel Goh

• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)

Nikos Chrisochoides

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

Olivier Clatz

• PBNRR (cli, bundled in PBNRR extension)

Pat Marion

• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

Patricio Vela

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Paul Mercea

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)

Pengdong Xiao

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Peter Black

• Change Tracker (scripted, bundled in Change Tracker extension)

Peter Karasev

• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)

Peter Savadjiev

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

Pierre Seroul

• Extract Skeleton (cli, built-in)

Pietro Nardelli

• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)

Polina Goll

• EMSegment Command Line (cli, built-in)

Qing Pan

• Gyro Guide (scripted, bundled in Gyro Guide extension)

Raul San Jose

• Diffusion Tensor Scalar Measurements (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• Tractography Label Map Seeding (cli, built-in)

Rob MacLeod

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Ron Kikinis

• ACPCTransform (cli, built-in)
• Cast Scalar Volume (cli, built-in)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Crop Volume (loadable, built-in)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• Mask Scalar Volume (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Robust Statistics Segmenter (cli, built-in)
• Surface Toolbox (scripted, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Threshold Scalar Volume (cli, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)

Ross Whitaker

• Label Map Smoothing (cli, built-in)

Ruifeng Chen

• Gyro Guide (scripted, bundled in Gyro Guide extension)

S

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Sam Song

• i Gyne (scripted, bundled in i Gyne extension)

Santiago Aja Fern

• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)

Sebastien Barré

• Cameras (loadable, built-in)

Sebastien Barre

• EMSegment Command Line (cli, built-in)

Shigeyuki Naka

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Soichiro Tani

• Corner Annotation (scripted, bundled in Corner Annotation extension)

Sonia Pujol

• Dice Computation (loadable, bundled in Dice Computation extension)
• DTIexport (cli, built-in)
• DTIimport (cli, built-in)

Stephen Aylward

• Extract Skeleton (cli, built-in)
• Gaussian Blur Image Filter (cli, built-in)

Stephen R Aylward

• Expert Automated Registration (cli, built-in)

Steve Pieper

• Atlas Tests
• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Data Probe (scripted, built-in)
• DICOM (scripted, built-in)
• DICOMDiffusion Volume Plugin
• DICOMLongitudinal PETCTPlugin
• DICOMScalar Volume Plugin
• DICOMSlicer Data Bundle Plugin
• Editor (scripted, built-in)
• Endoscopy (scripted, built-in)
• fiber visibility crash2438
• Fiber Bundle To Label Map (scripted, built-in)
• Label Statistics (scripted, built-in)
• label Toggle Bug2049
• Landmark Registration (scripted, bundled in CMFreg extension)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• Performance Tests
• Reporting (loadable, bundled in Reporting extension)
• RSNA2012Prostate Demo
• RSNAQuant Tutorial
• RSNAVis Tutorial
• Sample Data (scripted, built-in)
• scene Import2428
• Self Tests
• Simple Filters (scripted, built-in)
• slicer Close Crash Bug2590
• Slicer MRBTest
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Threshold Threading Test
• Vector To Scalar Volume (scripted, built-in)
• View Controllers (loadable, built-in)
• Volumes (loadable, built-in)
• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Sunil Kumar

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Sylvain Bouix

• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Tamas Ungi

• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

the University of North Carolina at Chapel Hill

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

Tina Kapur

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Tobias Penzkofer

• i Gyne (scripted, bundled in i Gyne extension)

Tohru Tani

• Corner Annotation (scripted, bundled in Corner Annotation extension)

UNC Medical School

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

UofM School Of Dentistry

• Growing (cli, bundled in CMFreg extension)

UofM School of Dentistry

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)

Vince Magnotta

• DWIConvert (cli, built-in)

Vincent A. Magnotta

• BRAINSLabel Stats (cli, built-in)

Vincent Magnotta

• BRAINSResample (cli, built-in)

Vinicius Boen

• Apply Matrix (cli, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)
• Surface Registration (scripted, bundled in CMFreg extension)

Wendy Plesniak

• Annotations (loadable, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Scene Views (loadable, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• View Controllers (loadable, built-in)
• Welcome (loadable, built-in)

Xiaodong Tao

• DWIConvert (cli, built-in)
• Model To Label Map (cli, built-in)

Xiaofeng Liu

• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)

Xiaojun Chen

• i Gyne (scripted, bundled in i Gyne extension)

y Wells

• i Gyne (scripted, bundled in i Gyne extension)
• Needle Finder (scripted, bundled in Needle Finder extension)

Yanling Liu

• Volume Rendering (loadable, built-in)

Yi Gao

• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• i Gyne (scripted, bundled in i Gyne extension)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Robust Statistics Segmenter (cli, built-in)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

Yinglin Lee

• Test Grid Transform Registration (cli, built-in)

Yingxuan Zhu

• Pk Modeling (cli, bundled in Pk Modeling extension)

Yixun Liu

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• PBNRR (cli, bundled in PBNRR extension)

Yong Zhang

• Annotations (loadable, built-in)

Yumin Yuan

• EMSegment Command Line (cli, built-in)

Modules by type

3 types:

• cli
• loadable
• scripted

cli

• ABC (cli, bundled in ABC extension)
• ACPCTransform (cli, built-in)
• Add Scalar Volumes (cli, built-in)
• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
• Apply Matrix (cli, bundled in CMFreg extension)
• Bin Shrink (cli, bundled in IASEM extension)
• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• BRAINSDemon Warp (cli, built-in)
• BRAINSDWICleanup (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSLabel Stats (cli, built-in)
• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• BSpline To Deformation Field (cli, built-in)
• Cast Scalar Volume (cli, built-in)
• Checker Board Filter (cli, built-in)
• Cleaver CLI (cli, bundled in Cleaver Extension extension)
• CLIROITest (cli, built-in)
• Create DICOMSeries (cli, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Tensor Test (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Dilate Label (cli, bundled in Erode Dilate Label extension)
• Downsize (cli, bundled in CMFreg extension)
• DTIexport (cli, built-in)
• DTIimport (cli, built-in)
• DWIConvert (cli, built-in)
• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)
• EMSegment Command Line (cli, built-in)
• EMSegment Transform To New Format (cli, built-in)
• Erode Label (cli, bundled in Erode Dilate Label extension)
• Execution Model Tour (cli, built-in)
• Expert Automated Registration (cli, built-in)
• Extract Skeleton (cli, built-in)
• Fiber Bundle Label Select (cli, built-in)
• Fiducial Registration (cli, built-in)
• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)
• Gaussian Blur Image Filter (cli, built-in)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Growing (cli, bundled in CMFreg extension)
• Histogram Matching (cli, built-in)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)
• Image Label Combine (cli, built-in)
• Image Maker (cli, bundled in Image Maker extension)
• Intensity Difference Metric (cli, bundled in Change Tracker extension)
• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Label Map Smoothing (cli, built-in)
• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Mask Scalar Volume (cli, built-in)
• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Median Image Filter (cli, built-in)
• Merge Models (cli, built-in)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
• Model Maker (cli, built-in)
• Model To Label Map (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Non Growing (cli, bundled in CMFreg extension)
• Orient Scalar Volume (cli, built-in)
• Otsu Threshold Image Filter (cli, built-in)
• PBNRR (cli, bundled in PBNRR extension)
• Perform Metric Test (cli, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
• Pk Modeling (cli, bundled in Pk Modeling extension)
• Probe Volume With Model (cli, built-in)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)
• Resample Scalar Volume (cli, built-in)
• Robust Statistics Segmenter (cli, built-in)
• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
• Simple Region Growing Segmentation (cli, built-in)
• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
• Subtract Scalar Volumes (cli, built-in)
• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
• Test Grid Transform Registration (cli, built-in)
• Threshold Scalar Volume (cli, built-in)
• Tractography Label Map Seeding (cli, built-in)
• VBRAINSDemon Warp (cli, built-in)
• Voting Binary Hole Filling Image Filter (cli, built-in)

loadable

• Annotations (loadable, built-in)
• Cameras (loadable, built-in)
• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Colors (loadable, built-in)
• Crop Volume (loadable, built-in)
• Data (loadable, built-in)
• Data Store (loadable, built-in)
• Dice Computation (loadable, bundled in Dice Computation extension)
• Double Arrays (loadable, built-in)
• EMSegment (loadable, built-in)
• EMSegment Quick (loadable, built-in)
• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• Markups (loadable, built-in)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
• Metafile Importer (loadable, bundled in Multidim Data extension)
• Models (loadable, built-in)
• Multi Volume Explorer (loadable, built-in)
• Open IGTLink IF (loadable, built-in)
• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Reformat (loadable, built-in)
• Reporting (loadable, bundled in Reporting extension)
• Scene Views (loadable, built-in)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)
• Subject Hierarchy (loadable, built-in)
• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
• Tractography Display (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volumes (loadable, built-in)
• Welcome (loadable, built-in)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

scripted

• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Change Tracker (scripted, bundled in Change Tracker extension)
• Charting (scripted, built-in)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Corner Annotation (scripted, bundled in Corner Annotation extension)
• Curve Maker (scripted, bundled in Curve Maker extension)
• Data Probe (scripted, built-in)
• DICOM (scripted, built-in)
• DICOM2Full Brain Tractography (scripted, built-in)
• Double Threshold Effect (scripted, bundled in IASEM extension)
• Editor (scripted, built-in)
• Endoscopy (scripted, built-in)
• Extension Wizard (scripted, built-in)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
• Fiber Bundle To Label Map (scripted, built-in)
• Gyro Guide (scripted, bundled in Gyro Guide extension)
• i Gyne (scripted, bundled in i Gyne extension)
• KUtil (scripted, bundled in Carrera Slice extension)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Label Statistics (scripted, built-in)
• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
• Landmark Registration (scripted, bundled in CMFreg extension)
• Multi Volume Importer (scripted, built-in)
• Needle Finder (scripted, bundled in Needle Finder extension)
• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
• Port Placement (scripted, bundled in Port Placement extension)
• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Sample Data (scripted, built-in)
• Scene Performance (scripted, built-in)
• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Simple Filters (scripted, built-in)
• Slice Link Logic (scripted, built-in)
• Slicer4Minute (scripted, built-in)
• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
• Surface Registration (scripted, bundled in CMFreg extension)
• Surface Toolbox (scripted, built-in)
• TCIABrowser (scripted, bundled in TCIABrowser extension)
• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
• Vector To Scalar Volume (scripted, built-in)
• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)
• Volume Rendering Scene Close (scripted, built-in)
• Window Level Effect (scripted, bundled in Window Level Effect extension)
• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Modules by extension

46 extensions:

• ABC
• Airway Segmentation
• builtin
• Carrera Slice
• CBC 3D I2MConversion
• Change Tracker
• Cleaver Extension
• CMFreg
• Corner Annotation
• Curve Maker
• Dice Computation
• Erode Dilate Label
• Fast Grow Cut Effect
• Finsler Tractography
• Gel Dosimetry Analysis
• Gyro Guide
• IASEM
• i Gyne
• Image Maker
• Intensity Segmenter
• LAScar Segmenter
• Longitudinal PETCT
• MABMIS
• Matlab Bridge
• Multidim Data
• Needle Finder
• PBNRR
• Percutaneous Approach Analysis
• Perk Tutor
• PETDICOMExtension
• Pk Modeling
• Port Placement
• Py Dev Remote Debug
• Reporting
• Scoliosis
• Segmentation Aided Registration
• Slicer To Kiwi Exporter
• Sobolev Segmenter
• Swiss Skull Stripper
• TCIABrowser
• Thingiverse Browser
• Tracker Stabilizer
• Volume Clip
• Window Level Effect
• XNATSlicer

ABC

• ABC (cli, bundled in ABC extension)

AirwaySegmentation

• Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)

builtin

• ACPCTransform (cli, built-in)
• Add Scalar Volumes (cli, built-in)
• Annotations (loadable, built-in)
• BRAINSDemon Warp (cli, built-in)
• BRAINSDWICleanup (cli, built-in)
• BRAINSFit (cli, built-in)
• BRAINSLabel Stats (cli, built-in)
• BRAINSResample (cli, built-in)
• BRAINSResize (cli, built-in)
• BRAINSROIAuto (cli, built-in)
• BRAINSTransform Convert (cli, built-in)
• BSpline To Deformation Field (cli, built-in)
• Cameras (loadable, built-in)
• Cast Scalar Volume (cli, built-in)
• Charting (scripted, built-in)
• Checker Board Filter (cli, built-in)
• CLIROITest (cli, built-in)
• Colors (loadable, built-in)
• Create DICOMSeries (cli, built-in)
• Crop Volume (loadable, built-in)
• Curvature Anisotropic Diffusion (cli, built-in)
• Data (loadable, built-in)
• Data Probe (scripted, built-in)
• Data Store (loadable, built-in)
• DICOM (scripted, built-in)
• DICOM2Full Brain Tractography (scripted, built-in)
• Diffusion Tensor Scalar Measurements (cli, built-in)
• Diffusion Tensor Test (cli, built-in)
• Diffusion Weighted Volume Masking (cli, built-in)
• Double Arrays (loadable, built-in)
• DTIexport (cli, built-in)
• DTIimport (cli, built-in)
• DWIConvert (cli, built-in)
• DWIJoint Rician LMMSEFilter (cli, built-in)
• DWIRician LMMSEFilter (cli, built-in)
• DWITo DTIEstimation (cli, built-in)
• DWIUnbiased Non Local Means Filter (cli, built-in)
• Editor (scripted, built-in)
• EMSegment (loadable, built-in)
• EMSegment Command Line (cli, built-in)
• EMSegment Quick (loadable, built-in)
• EMSegment Transform To New Format (cli, built-in)
• Endoscopy (scripted, built-in)
• Execution Model Tour (cli, built-in)
• Expert Automated Registration (cli, built-in)
• Extension Wizard (scripted, built-in)
• Extract Skeleton (cli, built-in)
• Fiber Bundle Label Select (cli, built-in)
• Fiber Bundle To Label Map (scripted, built-in)
• Fiducial Registration (cli, built-in)
• Gaussian Blur Image Filter (cli, built-in)
• Gradient Anisotropic Diffusion (cli, built-in)
• Grayscale Fill Hole Image Filter (cli, built-in)
• Grayscale Grind Peak Image Filter (cli, built-in)
• Grayscale Model Maker (cli, built-in)
• Histogram Matching (cli, built-in)
• Image Label Combine (cli, built-in)
• Label Map Smoothing (cli, built-in)
• Label Statistics (scripted, built-in)
• Markups (loadable, built-in)
• Mask Scalar Volume (cli, built-in)
• Median Image Filter (cli, built-in)
• Merge Models (cli, built-in)
• Model Maker (cli, built-in)
• Models (loadable, built-in)
• Model To Label Map (cli, built-in)
• Multiply Scalar Volumes (cli, built-in)
• Multi Volume Explorer (loadable, built-in)
• Multi Volume Importer (scripted, built-in)
• N4ITKBias Field Correction (cli, built-in)
• Open IGTLink IF (loadable, built-in)
• Orient Scalar Volume (cli, built-in)
• Otsu Threshold Image Filter (cli, built-in)
• Perform Metric Test (cli, built-in)
• PETStandard Uptake Value Computation (cli, built-in)
• Probe Volume With Model (cli, built-in)
• Reformat (loadable, built-in)
• Resample DTIVolume (cli, built-in)
• Resample Scalar Vector DWIVolume (cli, built-in)
• Resample Scalar Volume (cli, built-in)
• Robust Statistics Segmenter (cli, built-in)
• Sample Data (scripted, built-in)
• Scene Performance (scripted, built-in)
• Scene Views (loadable, built-in)
• Simple Filters (scripted, built-in)
• Simple Region Growing Segmentation (cli, built-in)
• Slice Link Logic (scripted, built-in)
• Slicer4Minute (scripted, built-in)
• Subject Hierarchy (loadable, built-in)
• Subtract Scalar Volumes (cli, built-in)
• Surface Toolbox (scripted, built-in)
• Test Grid Transform Registration (cli, built-in)
• Threshold Scalar Volume (cli, built-in)
• Tractography Display (loadable, built-in)
• Tractography Interactive Seeding (loadable, built-in)
• Tractography Label Map Seeding (cli, built-in)
• Transforms (loadable, built-in)
• Units (loadable, built-in)
• VBRAINSDemon Warp (cli, built-in)
• Vector To Scalar Volume (scripted, built-in)
• View Controllers (loadable, built-in)
• Volume Rendering (loadable, built-in)
• Volume Rendering Scene Close (scripted, built-in)
• Volumes (loadable, built-in)
• Voting Binary Hole Filling Image Filter (cli, built-in)
• Welcome (loadable, built-in)

CarreraSlice

• Carrera Slice (loadable, bundled in Carrera Slice extension)
• Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
• Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
• KUtil (scripted, bundled in Carrera Slice extension)

CBC_3D_I2MConversion

• Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
• Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)

ChangeTracker

• Change Tracker (scripted, bundled in Change Tracker extension)
• Intensity Difference Metric (cli, bundled in Change Tracker extension)

CleaverExtension

• Cleaver CLI (cli, bundled in Cleaver Extension extension)

CMFreg

• Apply Matrix (cli, bundled in CMFreg extension)
• Compare Volumes (scripted, bundled in CMFreg extension)
• Downsize (cli, bundled in CMFreg extension)
• Growing (cli, bundled in CMFreg extension)
• Label Addition (cli, bundled in CMFreg extension)
• Label Extraction (cli, bundled in CMFreg extension)
• Landmark Registration (scripted, bundled in CMFreg extension)
• Mask Creation (cli, bundled in CMFreg extension)
• Non Growing (cli, bundled in CMFreg extension)
• Surface Registration (scripted, bundled in CMFreg extension)

CornerAnnotation

• Corner Annotation (scripted, bundled in Corner Annotation extension)

CurveMaker

• Curve Maker (scripted, bundled in Curve Maker extension)

DiceComputation

• Dice Computation (loadable, bundled in Dice Computation extension)

ErodeDilateLabel

• Dilate Label (cli, bundled in Erode Dilate Label extension)
• Erode Label (cli, bundled in Erode Dilate Label extension)

FastGrowCutEffect

• Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
• Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)

FinslerTractography

• Finsler Backtracing (cli, bundled in Finsler Tractography extension)
• Finsler Tractography (cli, bundled in Finsler Tractography extension)

GelDosimetryAnalysis

• Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)

GyroGuide

• Gyro Guide (scripted, bundled in Gyro Guide extension)

IASEM

• Binary Watershed Effect (scripted, bundled in IASEM extension)
• Bin Shrink (cli, bundled in IASEM extension)
• Double Threshold Effect (scripted, bundled in IASEM extension)
• IASEMImport (cli, bundled in IASEM extension)
• IASEMImport Series (cli, bundled in IASEM extension)
• Label Object Statistics (scripted, bundled in IASEM extension)
• Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)

iGyne

• i Gyne (scripted, bundled in i Gyne extension)

ImageMaker

• Image Maker (cli, bundled in Image Maker extension)

IntensitySegmenter

• Intensity Segmenter (cli, bundled in Intensity Segmenter extension)

LAScarSegmenter

• LAScar Segmenter (cli, bundled in LAScar Segmenter extension)

LongitudinalPETCT

• Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
• PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)

MABMIS

• IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
• IGR3D MABMIS Training (cli, bundled in MABMIS extension)

MatlabBridge

• Matlab Commander (cli, bundled in Matlab Bridge extension)
• Matlab Module Generator (loadable, bundled in Matlab Bridge extension)

MultidimData

• Metafile Importer (loadable, bundled in Multidim Data extension)
• Sequence Browser (loadable, bundled in Multidim Data extension)
• Sequences (loadable, bundled in Multidim Data extension)

NeedleFinder

• Needle Finder (scripted, bundled in Needle Finder extension)

PBNRR

• PBNRR (cli, bundled in PBNRR extension)

PercutaneousApproachAnalysis

• Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)

PerkTutor

• Perk Evaluator (loadable, bundled in Perk Tutor extension)
• Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
• Transform Recorder (loadable, bundled in Perk Tutor extension)
• Workflow Segmentation (loadable, bundled in Perk Tutor extension)

PETDICOMExtension

• SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)

PkModeling

• Pk Modeling (cli, bundled in Pk Modeling extension)

PortPlacement

• Port Placement (scripted, bundled in Port Placement extension)

PyDevRemoteDebug

• Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)

Reporting

• Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
• Reporting (loadable, bundled in Reporting extension)

Scoliosis

• Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
• Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)

SegmentationAidedRegistration

• Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)

SlicerToKiwiExporter

• Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)

SobolevSegmenter

• Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)

SwissSkullStripper

• Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)

TCIABrowser

• TCIABrowser (scripted, bundled in TCIABrowser extension)

ThingiverseBrowser

• Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)

TrackerStabilizer

• Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)

VolumeClip

• Volume Clip With Model (scripted, bundled in Volume Clip extension)
• Volume Clip With Roi (scripted, bundled in Volume Clip extension)

WindowLevelEffect

• Window Level Effect (scripted, bundled in Window Level Effect extension)

XNATSlicer

• Xnat Slicer (scripted, bundled in XNATSlicer extension)

Extensions by name

45 extensions:

• ABC
• Airway Segmentation
• Carrera Slice
• CBC 3D I2MConversion
• Change Tracker
• Cleaver Extension
• CMFreg
• Corner Annotation
• Curve Maker
• Dice Computation
• Erode Dilate Label
• Fast Grow Cut Effect
• Finsler Tractography
• Gel Dosimetry Analysis
• Gyro Guide
• IASEM
• i Gyne
• Image Maker
• Intensity Segmenter
• LAScar Segmenter
• Longitudinal PETCT
• MABMIS
• Matlab Bridge
• Multidim Data
• Needle Finder
• PBNRR
• Percutaneous Approach Analysis
• Perk Tutor
• PETDICOMExtension
• Pk Modeling
• Port Placement
• Py Dev Remote Debug
• Reporting
• Resection Planner
• Scoliosis
• Segmentation Aided Registration
• Slicer To Kiwi Exporter
• Sobolev Segmenter
• Swiss Skull Stripper
• TCIABrowser
• Thingiverse Browser
• Tracker Stabilizer
• Volume Clip
• Window Level Effect
• XNATSlicer

Extensions by category

20 categories:

• Converters
• Developer Tools
• Editor Effects
• Exporter
• Filtering
  • Morphology
• IGT
• Informatics
• Mesh Generation
• Microscopy
• Multidimensional data
• Quantification
• Radiotherapy
• Registration
• Remote
• Scoliosis
• Segmentation
• Tractography
• Training
• Utilities
• Wizards

Converters

• PETDICOMExtension

Developer Tools

• Image Maker
• Matlab Bridge
• Py Dev Remote Debug

Editor Effects

• Window Level Effect

Exporter

• Slicer To Kiwi Exporter

Filtering

Morphology

• Erode Dilate Label

IGT

• Port Placement
• Gyro Guide
• Corner Annotation
• Percutaneous Approach Analysis
• Needle Finder
• Tracker Stabilizer
• i Gyne
• Resection Planner

Informatics

• Reporting
• Longitudinal PETCT
• TCIABrowser
• Curve Maker

Mesh Generation

• CBC 3D I2MConversion
• Cleaver Extension

Microscopy

• IASEM

Multidimensional data

• Multidim Data

Quantification

• Dice Computation
• Pk Modeling

Radiotherapy

• Gel Dosimetry Analysis

Registration

• CMFreg
• Segmentation Aided Registration
• PBNRR

Remote

• XNATSlicer

Scoliosis

• Scoliosis

Segmentation

• Airway Segmentation
• Swiss Skull Stripper
• Carrera Slice
• LAScar Segmenter
• ABC
• Intensity Segmenter
• MABMIS
• Sobolev Segmenter
• Fast Grow Cut Effect
• Volume Clip

Tractography

• Finsler Tractography

Training

• Perk Tutor

Utilities

• Thingiverse Browser

Wizards

• Change Tracker

Extensions by contributing organization

54 contributing organizations:

• Asclepios INRIA) and Nikos Chrisochoides (CRTC
• Brigham and Women's Hospital
• BWH
• BWH & MGH
• BWH, SPL
• BWH/UAB
• College of Information Engineering, Zhejiang University of Technology, Hangzhou, China
• Crisalix
• CRTC
• Department of Neurosurgery, PLA General Hospital, Beijing, China
• Department of Orthodontics, UNC
• GE
• GE GLobal Research
• GT
• Isomics
• Kitware
• Moka Creative LLC, Washington University in St. Louis
• NIRAL, UNC
• Noware
• Perk Lab at Queen's University
• Perk Lab, Queen's
• Perk Lab, Queen's University
• PMH
• Queen's University
• Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
• SBU
• SCI Institute
• Shiga University of Medical Science, Japan
• Shiga University of Medical Science, Japan, SPL
• SPL
• SPL and BWH
• SPL B&W Harvard
• SRI
• Stony Brook University
• Surgical Planning Lab
• UAB
• UNC
• Univ of Michigan
• University College Cork
• University of Bern
• University of Heidelberg
• University of Iowa
• University of Utah
• Utah
• UWA
• Washington University in St. Louis

Asclepios INRIA) and Nikos Chrisochoides (CRTC

• PBNRR

Brigham and Women's Hospital

• Erode Dilate Label

BWH

• Change Tracker
• Curve Maker
• Dice Computation
• Fast Grow Cut Effect
• Pk Modeling
• Segmentation Aided Registration
• Tracker Stabilizer

BWH & MGH

• Carrera Slice

BWH, SPL

• PETDICOMExtension

BWH/UAB

• Segmentation Aided Registration

College of Information Engineering, Zhejiang University of Technology, Hangzhou, China

• Gyro Guide

Crisalix

• Swiss Skull Stripper

CRTC

• CBC 3D I2MConversion
• PBNRR

Department of Neurosurgery, PLA General Hospital, Beijing, China

• Gyro Guide

Department of Orthodontics, UNC

• Intensity Segmenter

GE

• Pk Modeling

GE GLobal Research

• MABMIS

GT

• Carrera Slice

Isomics

• Carrera Slice
• Finsler Tractography
• Slicer To Kiwi Exporter
• XNATSlicer

Kitware

• Change Tracker
• Image Maker
• Matlab Bridge
• Port Placement
• Slicer To Kiwi Exporter

Moka Creative LLC, Washington University in St. Louis

• XNATSlicer

NIRAL, UNC

• Intensity Segmenter

Noware

• Swiss Skull Stripper

PerkLab at Queen's University

• Py Dev Remote Debug

PerkLab, Queen's

• Multidim Data

PerkLab, Queen's University

• Gel Dosimetry Analysis
• Matlab Bridge
• Scoliosis
• Volume Clip

PMH

• Multidim Data

Queen's University

• Perk Tutor
• Resection Planner

Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto

• Matlab Bridge

SBU

• LAScar Segmenter

SCI Institute

• Cleaver Extension

Shiga University of Medical Science, Japan

• Corner Annotation

Shiga University of Medical Science, Japan, SPL

• Percutaneous Approach Analysis

SPL

• Change Tracker
• Percutaneous Approach Analysis
• Reporting
• Window Level Effect

SPL and BWH

• TCIABrowser

SPL B&W Harvard

• PBNRR

SRI

• Pk Modeling

Stony Brook University

• Carrera Slice
• Fast Grow Cut Effect

Surgical Planning Lab

• Longitudinal PETCT

UAB

• Carrera Slice
• Fast Grow Cut Effect
• LAScar Segmenter
• Segmentation Aided Registration
• Sobolev Segmenter

UNC

• CMFreg
• MABMIS
• Port Placement

Univ of Michigan

• CMFreg

University College Cork

• Airway Segmentation

University of Bern

• Swiss Skull Stripper

University of Heidelberg

• Longitudinal PETCT

University of Iowa

• PETDICOMExtension

University of Utah

• ABC

Utah

• LAScar Segmenter
• Segmentation Aided Registration

UWA

• Thingiverse Browser

Washington University in St. Louis

• XNATSlicer

Extensions by contributing individual

125 contributing individuals:

• Akila Viswanathan
• Alan Morris (Utah)
• Alex Yarmarkovich (Kitware))
• Alireza Mehrtash (SPL and BWH)
• Allen Tannenbaum (Stony Brook University)
• Andinet Enquobahrie (Kitware)
• Andras Lasso (PerkLab, Queen's University)
• Andre Mastmeyer
• Andrey Fedorov (SPL B&W Harvard)
• Andriy Fedorov (BWH)
• Andriy Kot (CRTC)
• Antonio Damato
• Antonio Tristan-Vega (Isomics)
• Arie Nakhmani (UAB)
• Arnaud Gelas (Crisalix)
• Atsushi Yamada (SUMS)
• Beatriz Paniagua (UNC)
• Bill Lorensen (Noware)
• Bradley Lowekamp (MSC/NLM)
• Brig Bagley (SCI Institute)
• Carl-Fredrik Westin
• Csaba Pinter (PerkLab, Queen's University)
• Dan Marcus (Washington University in St. Louis)
• Danny Perry (Utah)
• Demian Wasssermann
• Dinggang Shen (UNC)
• Ethan Ulrich (Univ. of Iowa)
• Fotis Drakopoulos (CRTC)
• Francois Budin (NIRAL, UNC)
• Franklin King (PerkLab, Queen's University)
• Greg Gardner (Utah)
• Guillaume Pernelle
• Ivan Kolesov (Stony Brook University)
• Jan Egger
• Jayender Jagadeesan (BWH)
• Jean-Christophe Fillion-Robin (Kitware)
• Jennifer Andrea (PerkLab, Queen's University)
• Jiashu Zhang (Department of Neurosurgery, PLA General Hospital, Beijing, China)
• Jim Miller (GE)
• Jonathan Bronson (SCI Institute)
• Josh Cates (Utah)
• Julien Finet (Kitware)
• Junichi Tokuda (BWH)
• Karl Fritscher (BWH & MGH)
• Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)
• Kilian Pohl (UPenn)
• Koichiro Murakami (BWH, SUMS)
• Lauren Barber
• Laurent Chauvin (BWH)
• Liang-Jia Zhu (UAB)
• Liangjia Zhu (Stony Brook University)
• Luis G. Torres (UNC)
• Luping Fang (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• Mahnaz Maddah (SRI)
• Manson Winsauer (UNC)
• Marcel Prastawa (University of Utah)
• Matt Lougheed (PerkLab, Queen's University)
• Mattea Welch (PerkLab, Queen's University)
• Matthew Holden (Queen's University)
• Matthew S. Holden (Queen's University)
• Mauricio Reyes (University of Bern)
• Ming-ching Chang (GE)
• Minjeong Kim (UNC)
• Nabgha Fahrat
• Nicole Aucoin (BWH)
• Nigel Goh (UWA)
• Nikos Chrisochoides (CRTC)
• Olivier Clatz (Asclepios INRIA) and Nikos Chrisochoides (CRTC)
• Pat Marion (Kitware)
• Patricio Vela (Georgia Institute of Technology)
• Paul Mercea (University of Heidelberg)
• Pengdong Xiao (Department of Orthodontics, UNC)
• Peter Black (BWH)
• Peter Karasev (Georgia Tech)
• Peter Savadjiev (Kitware))
• Pietro Nardelli (University College Cork)
• Qing Pan (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• Rick Herrick (Washington University in St. Louis)
• Rob Mac Leod (Utah)
• Ron Kikinis (BWH)
• Ruifeng Chen (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
• S
• Sam Song
• Stefan Bauer (University of Bern)
• Steve Pieper (Isomics Inc.)
• Sunil Kumar (Moka Creative, LLC, kumar.sunil.p@gmail.com)
• Sylvain Bouix (BWH)
• Tamas Ungi (PerkLab, Queen's University)
• Thomas Fejes (University of Bern)
• Tina Kapur
• Tobias Penzkofer
• Vinicius Boen (Univ of Michigan)
• Xiaofeng Liu (GE GLobal Research)
• Xiaojun Chen
• Xiaolei Chen (Department of Neurosurgery, PLA General Hospital, Beijing, China)
• y Wells
• Yi Gao (BWH/UAB)
• Yingxuan Zhu (GE)
• Yixun Liu (CRTC)

Akila Viswanathan

• i Gyne
• Needle Finder

Alan Morris

• LAScar Segmenter
• Segmentation Aided Registration

Alex Yarmarkovich

• Finsler Tractography

Alireza Mehrtash

• i Gyne
• Needle Finder
• TCIABrowser

Allen Tannenbaum

• Carrera Slice
• Fast Grow Cut Effect
• LAScar Segmenter
• Segmentation Aided Registration
• Sobolev Segmenter

Andinet Enquobahrie

• Port Placement

Andras Lasso

• Matlab Bridge
• Multidim Data
• Py Dev Remote Debug
• Tracker Stabilizer
• Volume Clip

Andre Mastmeyer

• Needle Finder

Andrey Fedorov

• CBC 3D I2MConversion
• Change Tracker
• Longitudinal PETCT
• PBNRR
• PETDICOMExtension
• Reporting
• TCIABrowser
• Window Level Effect

Andriy Fedorov

• Pk Modeling

Andriy Kot

• PBNRR

Antonio Damato

• i Gyne
• Needle Finder

Antonio Tristan-Vega

• Finsler Tractography

Arie Nakhmani

• Sobolev Segmenter

Arnaud Gelas

• Swiss Skull Stripper

Atsushi Yamada

• Corner Annotation

Beatriz Paniagua

• Intensity Segmenter

Bill Lorensen

• Swiss Skull Stripper

Bradley Lowekamp

• IASEM

Brig Bagley

• Cleaver Extension

Carl-Fredrik Westin

• Finsler Tractography

Csaba Pinter

• Gel Dosimetry Analysis

Dan Marcus

• XNATSlicer

Danny Perry

• LAScar Segmenter
• Segmentation Aided Registration

Demian Wasssermann

• Finsler Tractography

Dinggang Shen

• MABMIS

Ethan Ulrich

• PETDICOMExtension

Fotis Drakopoulos

• CBC 3D I2MConversion
• PBNRR

Francois Budin

• Intensity Segmenter

Franklin King

• Scoliosis

Greg Gardner

• LAScar Segmenter
• Segmentation Aided Registration

Guillaume Pernelle

• i Gyne
• Needle Finder

Ivan Kolesov

• Carrera Slice
• Fast Grow Cut Effect

Jan Egger

• i Gyne
• Needle Finder

Jayender Jagadeesan

• Tracker Stabilizer

Jean-Christophe Fillion-Robin

• Change Tracker
• Matlab Bridge
• Slicer To Kiwi Exporter

Jennifer Andrea

• Gel Dosimetry Analysis

Jiashu Zhang

• Gyro Guide

Jim Miller

• MABMIS
• Pk Modeling

Jonathan Bronson

• Cleaver Extension

Josh Cates

• LAScar Segmenter
• Segmentation Aided Registration

Julien Finet

• Image Maker

Junichi Tokuda

• Curve Maker
• Erode Dilate Label
• Percutaneous Approach Analysis

Karl Fritscher

• Carrera Slice

Kevin Wang

• Matlab Bridge
• Multidim Data

Kilian Pohl

• Change Tracker

Koichiro Murakami

• Percutaneous Approach Analysis

Lauren Barber

• i Gyne
• Needle Finder

Laurent Chauvin

• Dice Computation
• Percutaneous Approach Analysis
• Tracker Stabilizer

Liang-Jia Zhu

• Segmentation Aided Registration

Liangjia Zhu

• Carrera Slice
• Fast Grow Cut Effect
• LAScar Segmenter

Luis G. Torres

• Port Placement

Luping Fang

• Gyro Guide

Mahnaz Maddah

• Pk Modeling

Manson Winsauer

• CMFreg

Marcel Prastawa

• ABC

Matt Lougheed

• Resection Planner
• Volume Clip

Mattea Welch

• Gel Dosimetry Analysis

Matthew Holden

• Multidim Data

Matthew S. Holden

• Perk Tutor

Mauricio Reyes

• Swiss Skull Stripper

Ming-ching Chang

• Pk Modeling

Minjeong Kim

• MABMIS

Nabgha Fahrat

• i Gyne
• Needle Finder

Nicole Aucoin

• Reporting

Nigel Goh

• Thingiverse Browser

Nikos Chrisochoides

• CBC 3D I2MConversion

Olivier Clatz

• PBNRR

Pat Marion

• Slicer To Kiwi Exporter

Patricio Vela

• Carrera Slice

Paul Mercea

• Longitudinal PETCT

Pengdong Xiao

• Intensity Segmenter

Peter Black

• Change Tracker

Peter Karasev

• Carrera Slice

Peter Savadjiev

• Finsler Tractography

Pietro Nardelli

• Airway Segmentation

Qing Pan

• Gyro Guide

Rick Herrick

• XNATSlicer

Rob MacLeod

• LAScar Segmenter
• Segmentation Aided Registration

Ron Kikinis

• Change Tracker
• Fast Grow Cut Effect

Ruifeng Chen

• Gyro Guide

S

• i Gyne
• Needle Finder

Sam Song

• i Gyne
• Needle Finder

Stefan Bauer

• Swiss Skull Stripper

Steve Pieper

• Carrera Slice
• Reporting
• Slicer To Kiwi Exporter
• Window Level Effect
• XNATSlicer

Sunil Kumar

• XNATSlicer

Sylvain Bouix

• Segmentation Aided Registration

Tamas Ungi

• Perk Tutor
• Scoliosis

Thomas Fejes

• Swiss Skull Stripper

Tina Kapur

• i Gyne
• Needle Finder

Tobias Penzkofer

• i Gyne
• Needle Finder

Vinicius Boen

• CMFreg

Xiaofeng Liu

• MABMIS

Xiaojun Chen

• i Gyne
• Needle Finder

Xiaolei Chen

• Gyro Guide

y Wells

• i Gyne
• Needle Finder

Yi Gao

• Carrera Slice
• Fast Grow Cut Effect
• i Gyne
• LAScar Segmenter
• Needle Finder
• Segmentation Aided Registration

Yingxuan Zhu

• Pk Modeling

Yixun Liu

• CBC 3D I2MConversion
• PBNRR