Difference between revisions of "User:UpdateBot/Issue-2843-Consolidated-Extension-List"
From Slicer Wiki
(This page has been updated based on the list of extension description files available on the ExtensionsIndex) |
(This page has been updated based on the list of extension description files available on the ExtensionsIndex) |
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== BRAINS == | == BRAINS == | ||
=== LabelStatistics === | === LabelStatistics === | ||
| − | * | + | * BRAINSLabel Stats |
== CMF Registration == | == CMF Registration == | ||
| − | * | + | * [[Documentation/Nightly/Extensions/CMFreg|Apply Matrix]] |
| − | * LandmarkRegistration | + | * [[Documentation/Nightly/Modules/LandmarkRegistration|Landmark Registration]] |
| − | * | + | * [[Documentation/Nightly/Extensions/CMFreg|Surface Registration]] |
| − | * LabelExtraction | + | * [[Documentation/Nightly/Modules/LabelExtraction|Label Extraction]] |
| − | * LabelAddition | + | * [[Documentation/Nightly/Modules/LabelAddition|Label Addition]] |
| − | * Downsize | + | * [[Documentation/Nightly/Modules/Downsize|Downsize]] |
=== Voxelbase Registration === | === Voxelbase Registration === | ||
| − | * Growing | + | * [[Documentation/Nightly/Modules/Growing|Growing]] |
| − | * MaskCreation | + | * [[Documentation/Nightly/Modules/MaskCreation|Mask Creation]] |
| − | * NonGrowing | + | * [[Documentation/Nightly/Modules/NonGrowing|Non Growing]] |
== Converters == | == Converters == | ||
| − | * VectorToScalarVolume | + | * [[Documentation/Nightly/Modules/VectorToScalarVolume|Vector To Scalar Volume]] |
| − | * CropVolume | + | * [[Documentation/Nightly/Modules/CropVolume|Crop Volume]] |
| − | * CreateDICOMSeries | + | * [[Documentation/Nightly/Modules/CreateDICOMSeries|Create DICOMSeries]] |
| − | * OrientScalarVolume | + | * [[Documentation/Nightly/Modules/OrientScalarVolume|Orient Scalar Volume]] |
== Developer Tools == | == Developer Tools == | ||
| − | * EventBroker | + | * [[Documentation/Nightly/Modules/EventBroker|Event Broker]] |
| − | * | + | * Double Arrays |
| − | * PyDevRemoteDebug | + | * [[Documentation/Nightly/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] |
| − | * Cameras | + | * [[Documentation/Nightly/Modules/Cameras|Cameras]] |
| − | * ExtensionWizard | + | * [[Documentation/Nightly/Modules/ExtensionWizard|Extension Wizard]] |
| − | * ExecutionModelTour | + | * [[Documentation/Nightly/Modules/ExecutionModelTour|Execution Model Tour]] |
| − | * ImageMaker | + | * [[Documentation/Nightly/Modules/ImageMaker|Image Maker]] |
=== DICOM Plugins === | === DICOM Plugins === | ||
| − | * DICOMRWVMPlugin | + | * [[Documentation/Nightly/Modules/DICOMRWVMPlugin|DICOMRWVMPlugin]] |
| − | * | + | * DICOMLongitudinal PETCTPlugin |
| − | * | + | * Multi Volume Importer Plugin |
| − | * DICOMPETSUVPlugin | + | * [[Documentation/Nightly/Modules/DICOMPETSUVPlugin|DICOMPETSUVPlugin]] |
| − | * | + | * DICOMDiffusion Volume Plugin |
| − | * | + | * DICOMSegmentation Plugin |
| − | * | + | * DICOMScalar Volume Plugin |
| − | * | + | * DICOMSlicer Data Bundle Plugin |
=== Editor Extensions === | === Editor Extensions === | ||
| − | * | + | * [[Documentation/Nightly/Extensions/IASEM|Binary Watershed Effect]] |
| − | * | + | * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] |
| − | * | + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice Effect] |
| − | * | + | * [[Documentation/Nightly/Extensions/IASEM|Double Threshold Effect]] |
=== Matlab === | === Matlab === | ||
| − | * MatlabModuleGenerator | + | * [[Documentation/Nightly/Modules/MatlabModuleGenerator|Matlab Module Generator]] |
| − | * MatlabCommander | + | * [[Documentation/Nightly/Modules/MatlabCommander|Matlab Commander]] |
== Diffusion == | == Diffusion == | ||
| − | * TractographyDisplay | + | * [[Documentation/Nightly/Modules/TractographyDisplay|Tractography Display]] |
| − | * | + | * DICOM2Full Brain Tractography |
=== Diffusion Data Conversion === | === Diffusion Data Conversion === | ||
* DWIConvert | * DWIConvert | ||
=== Diffusion Tensor Images === | === Diffusion Tensor Images === | ||
| − | * ResampleDTIVolume | + | * [[Documentation/Nightly/Modules/ResampleDTIVolume|Resample DTIVolume]] |
| − | * DiffusionTensorScalarMeasurements | + | * [[Documentation/Nightly/Modules/DiffusionTensorScalarMeasurements|Diffusion Tensor Scalar Measurements]] |
| − | * TractographyLabelMapSeeding | + | * [[Documentation/Nightly/Modules/TractographyLabelMapSeeding|Tractography Label Map Seeding]] |
| − | * | + | * Tractography Interactive Seeding |
=== Diffusion Weighted Images === | === Diffusion Weighted Images === | ||
| − | * DWIRicianLMMSEFilter | + | * [[Documentation/Nightly/Modules/DWIRicianLMMSEFilter|DWIRician LMMSEFilter]] |
| − | * DWIJointRicianLMMSEFilter | + | * [[Documentation/Nightly/Modules/DWIJointRicianLMMSEFilter|DWIJoint Rician LMMSEFilter]] |
| − | * DWIToDTIEstimation | + | * [[Documentation/Nightly/Modules/DWIToDTIEstimation|DWITo DTIEstimation]] |
| − | * FinslerBacktracing | + | * [[Documentation/Nightly/Modules/FinslerBacktracing|Finsler Backtracing]] |
| − | * ResampleScalarVectorDWIVolume | + | * [[Documentation/Nightly/Modules/ResampleScalarVectorDWIVolume|Resample Scalar Vector DWIVolume]] |
| − | * FinslerTractography | + | * [[Documentation/Nightly/Modules/FinslerTractography|Finsler Tractography]] |
| − | * DiffusionWeightedVolumeMasking | + | * [[Documentation/Nightly/Modules/DiffusionWeightedVolumeMasking|Diffusion Weighted Volume Masking]] |
=== Tractography === | === Tractography === | ||
| − | * FiberBundleToLabelMap | + | * [[Documentation/Nightly/Modules/FiberBundleToLabelMap|Fiber Bundle To Label Map]] |
| − | * | + | * Fiber Bundle Label Select |
== Editor Effects == | == Editor Effects == | ||
| − | * WindowLevelEffect | + | * [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] |
== Endoscopy == | == Endoscopy == | ||
| − | * Endoscopy | + | * [[Documentation/Nightly/Modules/Endoscopy|Endoscopy]] |
== Examples == | == Examples == | ||
| − | * | + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] |
| − | * FastGrowCut | + | * [[Documentation/Nightly/Modules/FastGrowCut|Fast Grow Cut]] |
| − | * | + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Fast Grow Cut Segmenter] |
| − | * SegmentationAidedRegistration | + | * [[Documentation/Nightly/Modules/SegmentationAidedRegistration|Segmentation Aided Registration]] |
== Exporter == | == Exporter == | ||
| − | * SlicerToKiwiExporter | + | * [[Documentation/Nightly/Modules/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] |
== Filtering == | == Filtering == | ||
| − | * ExtractSkeleton | + | * [[Documentation/Nightly/Modules/ExtractSkeleton|Extract Skeleton]] |
| − | * ThresholdScalarVolume | + | * [[Documentation/Nightly/Modules/ThresholdScalarVolume|Threshold Scalar Volume]] |
| − | * N4ITKBiasFieldCorrection | + | * [[Documentation/Nightly/Modules/N4ITKBiasFieldCorrection|N4ITKBias Field Correction]] |
| − | * SimpleFilters | + | * [[Documentation/Nightly/Modules/SimpleFilters|Simple Filters]] |
| − | * ImageLabelCombine | + | * [[Documentation/Nightly/Modules/ImageLabelCombine|Image Label Combine]] |
| − | * VotingBinaryHoleFillingImageFilter | + | * [[Documentation/Nightly/Modules/VotingBinaryHoleFillingImageFilter|Voting Binary Hole Filling Image Filter]] |
| − | * HistogramMatching | + | * [[Documentation/Nightly/Modules/HistogramMatching|Histogram Matching]] |
| − | * CheckerBoardFilter | + | * [[Documentation/Nightly/Modules/CheckerBoardFilter|Checker Board Filter]] |
=== Arithmetic === | === Arithmetic === | ||
| − | * MultiplyScalarVolumes | + | * [[Documentation/Nightly/Modules/MultiplyScalarVolumes|Multiply Scalar Volumes]] |
| − | * AddScalarVolumes | + | * [[Documentation/Nightly/Modules/AddScalarVolumes|Add Scalar Volumes]] |
| − | * CastScalarVolume | + | * [[Documentation/Nightly/Modules/CastScalarVolume|Cast Scalar Volume]] |
| − | * SubtractScalarVolumes | + | * [[Documentation/Nightly/Modules/SubtractScalarVolumes|Subtract Scalar Volumes]] |
| − | * MaskScalarVolume | + | * [[Documentation/Nightly/Modules/MaskScalarVolume|Mask Scalar Volume]] |
=== Denoising === | === Denoising === | ||
| − | * GradientAnisotropicDiffusion | + | * [[Documentation/Nightly/Modules/GradientAnisotropicDiffusion|Gradient Anisotropic Diffusion]] |
| − | * MedianImageFilter | + | * [[Documentation/Nightly/Modules/MedianImageFilter|Median Image Filter]] |
| − | * GaussianBlurImageFilter | + | * [[Documentation/Nightly/Modules/GaussianBlurImageFilter|Gaussian Blur Image Filter]] |
| − | * CurvatureAnisotropicDiffusion | + | * [[Documentation/Nightly/Modules/CurvatureAnisotropicDiffusion|Curvature Anisotropic Diffusion]] |
=== Morphology === | === Morphology === | ||
| − | * GrayscaleFillHoleImageFilter | + | * [[Documentation/Nightly/Modules/GrayscaleFillHoleImageFilter|Grayscale Fill Hole Image Filter]] |
| − | * | + | * [[Documentation/Nightly/Extensions/ErodeDilateLabel|Erode Label]] |
| − | * | + | * [[Documentation/Nightly/Extensions/ErodeDilateLabel|Dilate Label]] |
| − | * GrayscaleGrindPeakImageFilter | + | * [[Documentation/Nightly/Modules/GrayscaleGrindPeakImageFilter|Grayscale Grind Peak Image Filter]] |
== IGT == | == IGT == | ||
| − | * PercutaneousApproachAnalysis | + | * [[Documentation/Nightly/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] |
| − | * PortPlacement | + | * [[Documentation/Nightly/Modules/PortPlacement|Port Placement]] |
| − | * OpenIGTLinkIF | + | * [[Documentation/Nightly/Modules/OpenIGTLinkIF|Open IGTLink IF]] |
| − | * NeedleFinder | + | * [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] |
| − | * TrackerStabilizer | + | * [[Documentation/Nightly/Modules/TrackerStabilizer|Tracker Stabilizer]] |
| − | * GyroGuide | + | * [[Documentation/Nightly/Modules/GyroGuide|Gyro Guide]] |
| − | * iGyne | + | * [[Documentation/Nightly/Extensions/iGyne|i Gyne]] |
| − | * CornerAnnotation | + | * [[Documentation/Nightly/Modules/CornerAnnotation|Corner Annotation]] |
== Informatics == | == Informatics == | ||
| − | * Annotations | + | * [[Documentation/Nightly/Modules/Annotations|Annotations]] |
| − | * Markups | + | * [[Documentation/Nightly/Modules/Markups|Markups]] |
| − | * Units | + | * [[Documentation/Nightly/Modules/Units|Units]] |
| − | * DICOM | + | * [[Documentation/Nightly/Modules/DICOM|DICOM]] |
| − | * SampleData | + | * [[Documentation/Nightly/Modules/SampleData|Sample Data]] |
| − | * SubjectHierarchy | + | * [[Documentation/Nightly/Modules/SubjectHierarchy|Subject Hierarchy]] |
| − | * Data | + | * [[Documentation/Nightly/Modules/Data|Data]] |
| − | * Colors | + | * [[Documentation/Nightly/Modules/Colors|Colors]] |
| − | * CurveMaker | + | * [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] |
| − | * TCIABrowser | + | * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] |
== Legacy == | == Legacy == | ||
=== Converters === | === Converters === | ||
| − | * BSplineToDeformationField | + | * [[Documentation/Nightly/Modules/BSplineToDeformationField|BSpline To Deformation Field]] |
=== Diffusion === | === Diffusion === | ||
==== Denoising ==== | ==== Denoising ==== | ||
| − | * DWIUnbiasedNonLocalMeansFilter | + | * [[Documentation/Nightly/Modules/DWIUnbiasedNonLocalMeansFilter|DWIUnbiased Non Local Means Filter]] |
==== Diffusion Data Conversion ==== | ==== Diffusion Data Conversion ==== | ||
* DTIimport | * DTIimport | ||
* DTIexport | * DTIexport | ||
=== Filtering === | === Filtering === | ||
| − | * OtsuThresholdImageFilter | + | * [[Documentation/Nightly/Modules/OtsuThresholdImageFilter|Otsu Threshold Image Filter]] |
| − | * ResampleScalarVolume | + | * [[Documentation/Nightly/Modules/ResampleScalarVolume|Resample Scalar Volume]] |
=== Registration === | === Registration === | ||
| − | * | + | * Test Grid Transform Registration |
| − | * ExpertAutomatedRegistration | + | * [[Documentation/Nightly/Modules/ExpertAutomatedRegistration|Expert Automated Registration]] |
=== Work in Progress === | === Work in Progress === | ||
==== Diffusion Tensor ==== | ==== Diffusion Tensor ==== | ||
===== Test ===== | ===== Test ===== | ||
| − | * | + | * Diffusion Tensor Test |
== Mesh Generation == | == Mesh Generation == | ||
| − | * | + | * [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver CLI]] |
== MeshGeneration == | == MeshGeneration == | ||
| − | * BodyCentricCubicMesh | + | * [[Documentation/Nightly/Modules/BodyCentricCubicMesh|Body Centric Cubic Mesh]] |
| − | * MeshCompression | + | * [[Documentation/Nightly/Modules/MeshCompression|Mesh Compression]] |
== Microscopy == | == Microscopy == | ||
| − | * | + | * [[Documentation/Nightly/Extensions/IASEM|Bin Shrink]] |
| − | * | + | * [[Documentation/Nightly/Extensions/IASEM|Label Object Statistics]] |
| − | * | + | * [[Documentation/Nightly/Extensions/IASEM|Spacing Aware Curvature Diffusion]] |
| − | * | + | * [[Documentation/Nightly/Extensions/IASEM|IASEMImport Series]] |
| − | * IASEMImport | + | * [[Documentation/Nightly/Extensions/IASEM|IASEMImport]] |
== Multidimensional data == | == Multidimensional data == | ||
| − | * | + | * [[Documentation/Nightly/Extensions/MultidimData|Metafile Importer]] |
| − | * | + | * [[Documentation/Nightly/Extensions/MultidimData|Sequence Browser]] |
| − | * Sequences | + | * [[Documentation/Nightly/Extensions/MultidimData|Sequences]] |
== MultiVolume Support == | == MultiVolume Support == | ||
| − | * MultiVolumeExplorer | + | * [[Documentation/Nightly/Modules/MultiVolumeExplorer|Multi Volume Explorer]] |
| − | * MultiVolumeImporter | + | * [[Documentation/Nightly/Modules/MultiVolumeImporter|Multi Volume Importer]] |
== Perk Tutor == | == Perk Tutor == | ||
| − | * | + | * [[Documentation/Nightly/Extensions/PerkTutor|Python Metrics Calculator]] |
| − | * WorkflowSegmentation | + | * [[Documentation/Nightly/Modules/WorkflowSegmentation|Workflow Segmentation]] |
| − | * TransformRecorder | + | * [[Documentation/Nightly/Modules/TransformRecorder|Transform Recorder]] |
| − | * PerkEvaluator | + | * [[Documentation/Nightly/Modules/PerkEvaluator|Perk Evaluator]] |
== Quantification == | == Quantification == | ||
| − | * PETStandardUptakeValueComputation | + | * [[Documentation/Nightly/Modules/PETStandardUptakeValueComputation|PETStandard Uptake Value Computation]] |
| − | * SUVFactorCalculator | + | * [[Documentation/Nightly/Modules/SUVFactorCalculator|SUVFactor Calculator]] |
| − | * SpinalCurvatureMeasurement | + | * [[Documentation/Nightly/Modules/SpinalCurvatureMeasurement|Spinal Curvature Measurement]] |
| − | * PkModeling | + | * [[Documentation/Nightly/Modules/PkModeling|Pk Modeling]] |
| − | * LabelStatistics | + | * [[Documentation/Nightly/Modules/LabelStatistics|Label Statistics]] |
| − | * | + | * [[Documentation/Nightly/Extensions/LongitudinalPETCT|PETSUVImage Maker]] |
| − | * DiceComputation | + | * [[Documentation/Nightly/Modules/DiceComputation|Dice Computation]] |
| − | * DataProbe | + | * [[Documentation/Nightly/Modules/DataProbe|Data Probe]] |
=== ChangeQuantification === | === ChangeQuantification === | ||
| − | * IntensityDifferenceMetric | + | * [[Documentation/Nightly/Modules/IntensityDifferenceMetric|Intensity Difference Metric]] |
== Registration == | == Registration == | ||
| − | * BRAINSResample | + | * [[Documentation/Nightly/Modules/BRAINSResample|BRAINSResample]] |
| − | * Transforms | + | * [[Documentation/Nightly/Modules/Transforms|Transforms]] |
* BRAINSResize | * BRAINSResize | ||
| − | * | + | * Perform Metric Test |
| − | * BRAINSFit | + | * [[Documentation/Nightly/Modules/BRAINSFit|BRAINSFit]] |
| − | * PBNRR | + | * [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] |
=== Specialized === | === Specialized === | ||
| − | * ACPCTransform | + | * [[Documentation/Nightly/Modules/ACPCTransform|ACPCTransform]] |
| − | * FiducialRegistration | + | * [[Documentation/Nightly/Modules/FiducialRegistration|Fiducial Registration]] |
| − | * | + | * VBRAINSDemon Warp |
| − | * BRAINSDemonWarp | + | * [[Documentation/Nightly/Modules/BRAINSDemonWarp|BRAINSDemon Warp]] |
| − | * Reformat | + | * [[Documentation/Nightly/Modules/Reformat|Reformat]] |
== Segmentation == | == Segmentation == | ||
| − | * Editor | + | * [[Documentation/Nightly/Modules/Editor|Editor]] |
| − | * | + | * EMSegment Quick |
| − | * SimpleRegionGrowingSegmentation | + | * [[Documentation/Nightly/Modules/SimpleRegionGrowingSegmentation|Simple Region Growing Segmentation]] |
* EMSegment | * EMSegment | ||
| − | * | + | * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Roi]] |
| − | * SwissSkullStripper | + | * [[Documentation/Nightly/Modules/SwissSkullStripper|Swiss Skull Stripper]] |
| − | * | + | * [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation CLI]] |
| − | * LAScarSegmenter | + | * [[Documentation/Nightly/Modules/LAScarSegmenter|LAScar Segmenter]] |
| − | * SobolevSegmenter | + | * [[Documentation/Nightly/Modules/SobolevSegmenter|Sobolev Segmenter]] |
| − | * | + | * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip With Model]] |
| − | * | + | * [[Documentation/Nightly/Extensions/MABMIS|IGR3D MABMIS Testing]] |
| − | * ABC | + | * [http://www.nitrc.org/projects/abc ABC] |
| − | * | + | * [[Documentation/Nightly/Extensions/MABMIS|IGR3D MABMIS Training]] |
| − | * IntensitySegmenter | + | * [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] |
=== Specialized === | === Specialized === | ||
| − | * | + | * EMSegment Command Line |
| − | * RobustStatisticsSegmenter | + | * [[Documentation/Nightly/Modules/RobustStatisticsSegmenter|Robust Statistics Segmenter]] |
* BRAINSROIAuto | * BRAINSROIAuto | ||
== Slicelets == | == Slicelets == | ||
| − | * | + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis Algo] |
== Surface Models == | == Surface Models == | ||
| − | * ModelToLabelMap | + | * [[Documentation/Nightly/Modules/ModelToLabelMap|Model To Label Map]] |
| − | * MergeModels | + | * [[Documentation/Nightly/Modules/MergeModels|Merge Models]] |
| − | * SurfaceToolbox | + | * [[Documentation/Nightly/Modules/SurfaceToolbox|Surface Toolbox]] |
| − | * ProbeVolumeWithModel | + | * [[Documentation/Nightly/Modules/ProbeVolumeWithModel|Probe Volume With Model]] |
| − | * GrayscaleModelMaker | + | * [[Documentation/Nightly/Modules/GrayscaleModelMaker|Grayscale Model Maker]] |
| − | * LabelMapSmoothing | + | * [[Documentation/Nightly/Modules/LabelMapSmoothing|Label Map Smoothing]] |
| − | * ModelMaker | + | * [[Documentation/Nightly/Modules/ModelMaker|Model Maker]] |
== Testing == | == Testing == | ||
| − | * | + | * Self Tests |
* CLIROITest | * CLIROITest | ||
* CLI4Test | * CLI4Test | ||
| − | * | + | * Threshold Threading Test |
| − | * | + | * [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis Monitoring]] |
| − | * | + | * Performance Tests |
| − | * | + | * Slicer MRBTest |
=== TestCases === | === TestCases === | ||
| − | * | + | * Slice Link Logic |
| − | * | + | * Atlas Tests |
| − | * | + | * RSNAQuant Tutorial |
| − | * | + | * Volume Rendering Scene Close |
| − | * | + | * test tractography display |
| − | * | + | * Subject Hierarchy Core Plugins Self Test |
| − | * | + | * slicer Close Crash Bug2590 |
| − | * | + | * Subject Hierarchy Generic Self Test |
* Charting | * Charting | ||
| − | * | + | * Scene Performance |
| − | * | + | * Markups In Compare Viewers Self Test |
| − | * | + | * fiber visibility crash2438 |
| − | * | + | * scene Import2428 |
| − | * | + | * RSNAVis Tutorial |
* JRC2013Vis | * JRC2013Vis | ||
| − | * | + | * RSNA2012Prostate Demo |
| − | * | + | * Add Many Markups Fiducial Test |
| − | * | + | * Neurosurgical Planning Tutorial Markups Self Test |
| − | * | + | * Colors Scalar Bar Self Test |
| − | * | + | * Markups In Views Self Test |
| − | * | + | * Change Tracker Self Test |
| − | * | + | * Fiducial Layout Switch Bug1914 |
| − | * | + | * View Controllers Slice Interpolation Bug1926 |
* Slicer4Minute | * Slicer4Minute | ||
| − | * | + | * label Toggle Bug2049 |
== Unspecified == | == Unspecified == | ||
* BRAINSDWICleanup | * BRAINSDWICleanup | ||
== Utilities == | == Utilities == | ||
| − | * ThingiverseBrowser | + | * [[Documentation/Nightly/Modules/ThingiverseBrowser|Thingiverse Browser]] |
| − | * | + | * EMSegment Transform To New Format |
| − | * DataStore | + | * [[Documentation/Nightly/Modules/DataStore|Data Store]] |
=== BRAINS === | === BRAINS === | ||
| − | * | + | * BRAINSTransform Convert |
== Wizards == | == Wizards == | ||
| − | * CompareVolumes | + | * [[Documentation/Nightly/Modules/CompareVolumes|Compare Volumes]] |
| − | * ChangeTracker | + | * [[Documentation/Nightly/Modules/ChangeTracker|Change Tracker]] |
== Work in Progress == | == Work in Progress == | ||
| − | * LongitudinalPETCT | + | * [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] |
=== Converters === | === Converters === | ||
| − | * | + | * [[Documentation/Nightly/Extensions/Reporting|Label To DICOMSEGConverter]] |
=== Informatics === | === Informatics === | ||
| − | * Reporting | + | * [[Documentation/Nightly/Extensions/Reporting|Reporting]] |
==== TestCases ==== | ==== TestCases ==== | ||
| − | * | + | * Reporting Self Test |
| − | * | + | * Label To DICOMSEGConverter Self Test |
== XNATSlicer == | == XNATSlicer == | ||
| − | * | + | * [[Documentation/Nightly/Extensions/XNATSlicer|Xnat Slicer]] |
= Modules by contributing organization = | = Modules by contributing organization = | ||
62 contributing organizations: | 62 contributing organizations: | ||
| Line 2,487: | Line 2,487: | ||
== Cardiac MRI toolkit == | == Cardiac MRI toolkit == | ||
== Converters == | == Converters == | ||
| − | * PETDICOMExtension | + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Extensions/PETDICOM PETDICOMExtension] |
== Developer Tools == | == Developer Tools == | ||
| − | * ImageMaker | + | * [[Documentation/Nightly/Extensions/ImageMaker|Image Maker]] |
| − | * PyDevRemoteDebug | + | * [[Documentation/Nightly/Extensions/PyDevRemoteDebug|Py Dev Remote Debug]] |
| − | * MatlabBridge | + | * [[Documentation/Nightly/Extensions/MatlabBridge|Matlab Bridge]] |
== Diffusion == | == Diffusion == | ||
== Editor Effects == | == Editor Effects == | ||
| − | * WindowLevelEffect | + | * [[Documentation/Nightly/Extensions/WindowLevelEffect|Window Level Effect]] |
== Exporter == | == Exporter == | ||
| − | * SlicerToKiwiExporter | + | * [[Documentation/Nightly/Extensions/SlicerToKiwiExporter|Slicer To Kiwi Exporter]] |
== Filtering == | == Filtering == | ||
=== Morphology === | === Morphology === | ||
| − | * ErodeDilateLabel | + | * [[Documentation/Nightly/Extensions/ErodeDilateLabel|Erode Dilate Label]] |
== IGT == | == IGT == | ||
| − | * PortPlacement | + | * [[Documentation/Nightly/Extensions/PortPlacement|Port Placement]] |
| − | * GyroGuide | + | * [[Documentation/Nightly/Extensions/GyroGuide|Gyro Guide]] |
| − | * CornerAnnotation | + | * [[Documentation/Nightly/Extensions/CornerAnnotation|Corner Annotation]] |
| − | * iGyne | + | * [[Documentation/Nightly/Extensions/iGyne|i Gyne]] |
| − | * PercutaneousApproachAnalysis | + | * [[Documentation/Nightly/Extensions/PercutaneousApproachAnalysis|Percutaneous Approach Analysis]] |
| − | * NeedleFinder | + | * [[Documentation/Nightly/Extensions/NeedleFinder|Needle Finder]] |
| − | * TrackerStabilizer | + | * [[Documentation/Nightly/Extensions/TrackerStabilizer|Tracker Stabilizer]] |
| − | * ResectionPlanner | + | * [[Documentation/Nightly/Extensions/ResectionPlanner|Resection Planner]] |
== Informatics == | == Informatics == | ||
| − | * Reporting | + | * [[Documentation/Nightly/Extensions/Reporting|Reporting]] |
| − | * LongitudinalPETCT | + | * [[Documentation/Nightly/Extensions/LongitudinalPETCT|Longitudinal PETCT]] |
| − | * TCIABrowser | + | * [[Documentation/Nightly/Extensions/TCIABrowser|TCIABrowser]] |
| − | * CurveMaker | + | * [[Documentation/Nightly/Extensions/CurveMaker|Curve Maker]] |
== Mesh Generation == | == Mesh Generation == | ||
| − | * CBC_3D_I2MConversion | + | * [[Documentation/Nightly/Extensions/CBC_3D_I2MConversion|CBC 3D I2MConversion]] |
| − | * CleaverExtension | + | * [[Documentation/Nightly/Extensions/CleaverExtension|Cleaver Extension]] |
== Microscopy == | == Microscopy == | ||
| − | * IASEM | + | * [[Documentation/Nightly/Extensions/IASEM|IASEM]] |
== Multidimensional data == | == Multidimensional data == | ||
| − | * MultidimData | + | * [[Documentation/Nightly/Extensions/MultidimData|Multidim Data]] |
== Quantification == | == Quantification == | ||
| − | * DiceComputation | + | * [[Documentation/Nightly/Extensions/DiceComputation|Dice Computation]] |
| − | * PkModeling | + | * [[Documentation/Nightly/Extensions/PkModeling|Pk Modeling]] |
== Radiotherapy == | == Radiotherapy == | ||
| − | * | + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/GelDosimetry Gel Dosimetry Analysis] |
== Registration == | == Registration == | ||
| − | * CMFreg | + | * [[Documentation/Nightly/Extensions/CMFreg|CMFreg]] |
| − | * SegmentationAidedRegistration | + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration Segmentation Aided Registration] |
| − | * PBNRR | + | * [[Documentation/Nightly/Extensions/PBNRR|PBNRR]] |
== Remote == | == Remote == | ||
| − | * XNATSlicer | + | * [[Documentation/Nightly/Extensions/XNATSlicer|XNATSlicer]] |
== Scoliosis == | == Scoliosis == | ||
| − | * Scoliosis | + | * [[Documentation/Nightly/Extensions/Scoliosis|Scoliosis]] |
== Segmentation == | == Segmentation == | ||
| − | * SwissSkullStripper | + | * [[Documentation/Nightly/Extensions/SwissSkullStripper|Swiss Skull Stripper]] |
| − | * | + | * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/CarreraSliceInteractiveSegmenter Carrera Slice] |
| − | * AirwaySegmentation | + | * [[Documentation/Nightly/Extensions/AirwaySegmentation|Airway Segmentation]] |
| − | * LAScarSegmenter | + | * [[Documentation/Nightly/Extensions/LAScarSegmenter|LAScar Segmenter]] |
| − | * ABC | + | * [http://www.nitrc.org/projects/abc ABC] |
| − | * MABMIS | + | * [[Documentation/Nightly/Extensions/MABMIS|MABMIS]] |
| − | * SobolevSegmenter | + | * [[Documentation/Nightly/Extensions/SobolevSegmenter|Sobolev Segmenter]] |
| − | * | + | * [https://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Modules/FastGrowCut Fast Grow Cut Effect] |
| − | * IntensitySegmenter | + | * [[Documentation/Nightly/Extensions/IntensitySegmenter|Intensity Segmenter]] |
| − | * VolumeClip | + | * [[Documentation/Nightly/Extensions/VolumeClip|Volume Clip]] |
== Shape Analysis == | == Shape Analysis == | ||
== Surface Models == | == Surface Models == | ||
== Tractography == | == Tractography == | ||
| − | * FinslerTractography | + | * [[Documentation/Nightly/Extensions/FinslerTractography|Finsler Tractography]] |
== Training == | == Training == | ||
| − | * PerkTutor | + | * [[Documentation/Nightly/Extensions/PerkTutor|Perk Tutor]] |
== Utilities == | == Utilities == | ||
| − | * ThingiverseBrowser | + | * [[Documentation/Nightly/Extensions/ThingiverseBrowser|Thingiverse Browser]] |
== Vascular Modeling Toolkit == | == Vascular Modeling Toolkit == | ||
== Wizards == | == Wizards == | ||
| − | * ChangeTracker | + | * [[Documentation/Nightly/Extensions/ChangeTracker|Change Tracker]] |
= Working extensions by contributing organization = | = Working extensions by contributing organization = | ||
54 contributing organizations: | 54 contributing organizations: | ||
| Line 3,137: | Line 3,137: | ||
* [[#Wizards|Wizards]] | * [[#Wizards|Wizards]] | ||
== Cardiac == | == Cardiac == | ||
| − | * | + | * [http://brainsia.github.io/CardiacAgatstonMeasures/ Cardiac Agaston Measures] |
== Cardiac MRI toolkit == | == Cardiac MRI toolkit == | ||
| − | * | + | * [http://capulet.med.utah.edu/namic/cmrslicer/ Cardiac MRI Toolkit] |
== Converters == | == Converters == | ||
== Developer Tools == | == Developer Tools == | ||
== Diffusion == | == Diffusion == | ||
| − | * DTIAtlasBuilder | + | * [[Documentation/Nightly/Extensions/DTIAtlasBuilder|DTIAtlas Builder]] |
| − | * DTIProcess | + | * [[Documentation/Nightly/Extensions/DTIProcess|DTIProcess]] |
| − | * FiberViewerLight | + | * [[Documentation/Nightly/Extensions/FiberViewerLight|Fiber Viewer Light]] |
| − | * DTIAtlasFiberAnalyzer | + | * [[Documentation/Nightly/Extensions/DTIAtlasFiberAnalyzer|DTIAtlas Fiber Analyzer]] |
| − | * DTIPrep | + | * [[Documentation/Nightly/Extensions/DTIPrep|DTIPrep]] |
== Editor Effects == | == Editor Effects == | ||
== Exporter == | == Exporter == | ||
| Line 3,153: | Line 3,153: | ||
=== Morphology === | === Morphology === | ||
== IGT == | == IGT == | ||
| − | * LightWeightRobotIGT | + | * [[Documentation/Nightly/Extensions/LightWeightRobotIGT|Light Weight Robot IGT]] |
| − | * SlicerIGT | + | * [[Documentation/Nightly/Extensions/SlicerIGT|Slicer IGT]] |
== Informatics == | == Informatics == | ||
| − | * FacetedVisualizer | + | * [[Documentation/Nightly/Extensions/FacetedVisualizer|Faceted Visualizer]] |
== Mesh Generation == | == Mesh Generation == | ||
== Microscopy == | == Microscopy == | ||
| Line 3,162: | Line 3,162: | ||
== Quantification == | == Quantification == | ||
== Radiotherapy == | == Radiotherapy == | ||
| − | * SlicerRT | + | * [[Documentation/Nightly/Extensions/SlicerRT|Slicer RT]] |
== Registration == | == Registration == | ||
== Remote == | == Remote == | ||
== Scoliosis == | == Scoliosis == | ||
== Segmentation == | == Segmentation == | ||
| − | * OpenCAD | + | * [[Documentation/Nightly/Extensions/OpenCAD|Open CAD]] |
| − | * SkullStripper | + | * [[Documentation/Nightly/Extensions/SkullStripper|Skull Stripper]] |
| − | * | + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/4.2/Extensions/CircleDetectionHoughTransform hough Transform CLI] |
| − | * RSSExtension | + | * [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/RobustStatisticsSegmenter RSSExtension] |
| − | * LASegmenter | + | * [[Documentation/Nightly/Extensions/LASegmenter|LASegmenter]] |
== Shape Analysis == | == Shape Analysis == | ||
| − | * ModelToModelDistance | + | * [[Documentation/Nightly/Extensions/ModelToModelDistance|Model To Model Distance]] |
| − | * ShapePopulationViewer | + | * [[Documentation/Nightly/Extensions/ShapePopulationViewer|Shape Population Viewer]] |
| − | * SPHARM-PDM | + | * [http://www.nitrc.org/projects/spharm-pdm SPHARM-PDM] |
== Surface Models == | == Surface Models == | ||
| − | * ModelClip | + | * [[Documentation/Nightly/Extensions/ModelClip|Model Clip]] |
== Tractography == | == Tractography == | ||
| − | * UKFTractography | + | * [[Documentation/Nightly/Extensions/UKFTractography|UKFTractography]] |
== Training == | == Training == | ||
== Utilities == | == Utilities == | ||
== Vascular Modeling Toolkit == | == Vascular Modeling Toolkit == | ||
| − | * | + | * [http://slicer.vmtk.org/ VMTK] |
== Wizards == | == Wizards == | ||
= Broken extensions by contributing organization = | = Broken extensions by contributing organization = | ||
Revision as of 10:57, 5 December 2014
- Modules by name
- Modules by category
- Modules by contributing organization
- Modules by contributing individual
- Modules by type
- Modules by extension
- Working extensions by name
- Working extensions by category
- Working extensions by contributing organization
- Working extensions by contributing individual
- Broken extensions by name
- Broken extensions by category
- Broken extensions by contributing organization
- Broken extensions by contributing individual
Modules by name
156 modules:
- ABC (cli, bundled in ABC extension)
- ACPCTransform (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- Annotations (loadable, built-in)
- Apply Matrix (cli, bundled in CMFreg extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- BRAINSDemon Warp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabel Stats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Cast Scalar Volume (cli, built-in)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Checker Board Filter (cli, built-in)
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
- Colors (loadable, built-in)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Create DICOMSeries (cli, built-in)
- Crop Volume (loadable, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Data (loadable, built-in)
- Data Probe (scripted, built-in)
- Data Store (loadable, built-in)
- Dice Computation (loadable, bundled in Dice Computation extension)
- DICOM (scripted, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Dilate Label (cli, bundled in Erode Dilate Label extension)
- Downsize (cli, bundled in CMFreg extension)
- DWIConvert (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- Editor (scripted, built-in)
- EMSegment (loadable, built-in)
- EMSegment Command Line (cli, built-in)
- EMSegment Quick (loadable, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Endoscopy (scripted, built-in)
- Erode Label (cli, bundled in Erode Dilate Label extension)
- Extract Skeleton (cli, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Fiber Bundle Label Select (cli, built-in)
- Fiber Bundle To Label Map (scripted, built-in)
- Fiducial Registration (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Gaussian Blur Image Filter (cli, built-in)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Growing (cli, bundled in CMFreg extension)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- Histogram Matching (cli, built-in)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
- i Gyne (scripted, bundled in i Gyne extension)
- Image Label Combine (cli, built-in)
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- KUtil (scripted, bundled in Carrera Slice extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Map Smoothing (cli, built-in)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Label Statistics (scripted, built-in)
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
- Landmark Registration (scripted, bundled in CMFreg extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- Markups (loadable, built-in)
- Mask Creation (cli, bundled in CMFreg extension)
- Mask Scalar Volume (cli, built-in)
- Median Image Filter (cli, built-in)
- Merge Models (cli, built-in)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Model Maker (cli, built-in)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Non Growing (cli, bundled in CMFreg extension)
- Open IGTLink IF (loadable, built-in)
- Orient Scalar Volume (cli, built-in)
- PBNRR (cli, bundled in PBNRR extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Perform Metric Test (cli, built-in)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Port Placement (scripted, bundled in Port Placement extension)
- Probe Volume With Model (cli, built-in)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Reformat (loadable, built-in)
- Reporting (loadable, bundled in Reporting extension)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
- Robust Statistics Segmenter (cli, built-in)
- Sample Data (scripted, built-in)
- Scene Views (loadable, built-in)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
- Simple Filters (scripted, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Subject Hierarchy (loadable, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Surface Registration (scripted, bundled in CMFreg extension)
- Surface Toolbox (scripted, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
- Threshold Scalar Volume (cli, built-in)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Tractography Display (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
- Tractography Label Map Seeding (cli, built-in)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Transforms (loadable, built-in)
- Units (loadable, built-in)
- VBRAINSDemon Warp (cli, built-in)
- Vector To Scalar Volume (scripted, built-in)
- View Controllers (loadable, built-in)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- Welcome (loadable, built-in)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Modules by name
156 modules:
Modules by category
30 categories:
- BRAINS
- CMF Registration
- Converters
- Developer Tools
- Diffusion
- Editor Effects
- Endoscopy
- Examples
- Exporter
- Filtering
- IGT
- Informatics
- Legacy
- Mesh Generation
- Mesh Generation
- Microscopy
- Multidimensional data
- Multi Volume Support
- Perk Tutor
- Quantification
- Registration
- Segmentation
- Slicelets
- Surface Models
- Testing
- Unspecified
- Utilities
- Wizards
- Work in Progress
- XNATSlicer
BRAINS
LabelStatistics
- BRAINSLabel Stats
CMF Registration
Voxelbase Registration
Converters
Developer Tools
- Event Broker
- Double Arrays
- Py Dev Remote Debug
- Cameras
- Extension Wizard
- Execution Model Tour
- Image Maker
DICOM Plugins
- DICOMRWVMPlugin
- DICOMLongitudinal PETCTPlugin
- Multi Volume Importer Plugin
- DICOMPETSUVPlugin
- DICOMDiffusion Volume Plugin
- DICOMSegmentation Plugin
- DICOMScalar Volume Plugin
- DICOMSlicer Data Bundle Plugin
Editor Extensions
Matlab
Diffusion
- Tractography Display
- DICOM2Full Brain Tractography
Diffusion Data Conversion
- DWIConvert
Diffusion Tensor Images
- Resample DTIVolume
- Diffusion Tensor Scalar Measurements
- Tractography Label Map Seeding
- Tractography Interactive Seeding
Diffusion Weighted Images
- DWIRician LMMSEFilter
- DWIJoint Rician LMMSEFilter
- DWITo DTIEstimation
- Finsler Backtracing
- Resample Scalar Vector DWIVolume
- Finsler Tractography
- Diffusion Weighted Volume Masking
Tractography
- Fiber Bundle To Label Map
- Fiber Bundle Label Select
Editor Effects
Endoscopy
Examples
Exporter
Filtering
- Extract Skeleton
- Threshold Scalar Volume
- N4ITKBias Field Correction
- Simple Filters
- Image Label Combine
- Voting Binary Hole Filling Image Filter
- Histogram Matching
- Checker Board Filter
Arithmetic
- Multiply Scalar Volumes
- Add Scalar Volumes
- Cast Scalar Volume
- Subtract Scalar Volumes
- Mask Scalar Volume
Denoising
- Gradient Anisotropic Diffusion
- Median Image Filter
- Gaussian Blur Image Filter
- Curvature Anisotropic Diffusion
Morphology
IGT
- Percutaneous Approach Analysis
- Port Placement
- Open IGTLink IF
- Needle Finder
- Tracker Stabilizer
- Gyro Guide
- i Gyne
- Corner Annotation
Informatics
Legacy
Converters
Diffusion
Denoising
Diffusion Data Conversion
- DTIimport
- DTIexport
Filtering
Registration
- Test Grid Transform Registration
- Expert Automated Registration
Work in Progress
Diffusion Tensor
Test
- Diffusion Tensor Test
Mesh Generation
MeshGeneration
Microscopy
Multidimensional data
MultiVolume Support
Perk Tutor
Quantification
- PETStandard Uptake Value Computation
- SUVFactor Calculator
- Spinal Curvature Measurement
- Pk Modeling
- Label Statistics
- PETSUVImage Maker
- Dice Computation
- Data Probe
ChangeQuantification
Registration
- BRAINSResample
- Transforms
- BRAINSResize
- Perform Metric Test
- BRAINSFit
- PBNRR
Specialized
- ACPCTransform
- Fiducial Registration
- VBRAINSDemon Warp
- BRAINSDemon Warp
- Reformat
Segmentation
- Editor
- EMSegment Quick
- Simple Region Growing Segmentation
- EMSegment
- Volume Clip With Roi
- Swiss Skull Stripper
- Airway Segmentation CLI
- LAScar Segmenter
- Sobolev Segmenter
- Volume Clip With Model
- IGR3D MABMIS Testing
- ABC
- IGR3D MABMIS Training
- Intensity Segmenter
Specialized
- EMSegment Command Line
- Robust Statistics Segmenter
- BRAINSROIAuto
Slicelets
Surface Models
- Model To Label Map
- Merge Models
- Surface Toolbox
- Probe Volume With Model
- Grayscale Model Maker
- Label Map Smoothing
- Model Maker
Testing
- Self Tests
- CLIROITest
- CLI4Test
- Threshold Threading Test
- Scoliosis Monitoring
- Performance Tests
- Slicer MRBTest
TestCases
- Slice Link Logic
- Atlas Tests
- RSNAQuant Tutorial
- Volume Rendering Scene Close
- test tractography display
- Subject Hierarchy Core Plugins Self Test
- slicer Close Crash Bug2590
- Subject Hierarchy Generic Self Test
- Charting
- Scene Performance
- Markups In Compare Viewers Self Test
- fiber visibility crash2438
- scene Import2428
- RSNAVis Tutorial
- JRC2013Vis
- RSNA2012Prostate Demo
- Add Many Markups Fiducial Test
- Neurosurgical Planning Tutorial Markups Self Test
- Colors Scalar Bar Self Test
- Markups In Views Self Test
- Change Tracker Self Test
- Fiducial Layout Switch Bug1914
- View Controllers Slice Interpolation Bug1926
- Slicer4Minute
- label Toggle Bug2049
Unspecified
- BRAINSDWICleanup
Utilities
- Thingiverse Browser
- EMSegment Transform To New Format
- Data Store
BRAINS
- BRAINSTransform Convert
Wizards
Work in Progress
Converters
Informatics
TestCases
- Reporting Self Test
- Label To DICOMSEGConverter Self Test
XNATSlicer
Modules by contributing organization
62 contributing organizations:
- Asclepios INRIA
- AZE R&D
- Brigham and Women's Hospital
- BWH
- BWH, SPL
- BWH, SUMS
- BWH/UAB
- College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China
- CRTC
- gatech
- GE
- Georgia Institute of Technology
- Georgia Tech
- IBM
- Isomics
- Isomics Inc.
- Isomics, Inc.
- Isomics, pieper@isomics.com
- Kitware
- Kitware)
- MGH
- Moka Creative, LLC, kumar.sunil.p@gmail.com
- MSC/NLM
- Noware
- Orobix
- Perk Lab at Queen's University
- Perk Lab, Queen's
- Perk Lab, Queen's University
- PMH
- Queen's
- Queen's University
- Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
- SAIC-Frederick, NCI-Frederick
- SBU
- SCI Institute
- Shiga University of Medical Science, Japan, SPL
- SNR
- SPL
- SPL B&W Harvard
- SPL, BWH
- SPL, BWH, UPenn
- Stony Brook University
- SUMS
- Surgical Planning Lab
- UAB
- Uiowa
- UIowa
- UNC
- Univ of Michigan
- Univ. of Iowa
- University College Cork
- University of Alabama Birmingham
- University of Heidelberg
- University of Iowa
- University of Iowa) and Andrey Fedorov (SPL
- UPenn
- Utah
- UVa
- UWA
- Wash U-St. Louis, dmarcus@wustl.edu
- while at GE
Asclepios INRIA
AZE R&D
- JRC2013Vis
Brigham and Women's Hospital
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Surface Toolbox (scripted, built-in)
- test tractography display
BWH
- Add Many Markups Fiducial Test
- Change Tracker Self Test
- Colors Scalar Bar Self Test
- Curve Maker (scripted, bundled in Curve Maker extension)
- Dice Computation (loadable, bundled in Dice Computation extension)
- DICOMRWVMPlugin
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- Fiducial Layout Switch Bug1914
- Markups (loadable, built-in)
- Markups In Compare Viewers Self Test
- Markups In Views Self Test
- Neurosurgical Planning Tutorial Markups Self Test
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Volume Rendering Scene Close (scripted, built-in)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
BWH, SPL
- Crop Volume (loadable, built-in)
BWH, SUMS
- Corner Annotation (scripted, bundled in Corner Annotation extension)
BWH/UAB
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China
- Gyro Guide (scripted, bundled in Gyro Guide extension)
CRTC
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- PBNRR (cli, bundled in PBNRR extension)
gatech
- Robust Statistics Segmenter (cli, built-in)
GE
- Add Scalar Volumes (cli, built-in)
- Charting (scripted, built-in)
- Checker Board Filter (cli, built-in)
- Create DICOMSeries (cli, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Diffusion Tensor Test (cli, built-in)
- DWIConvert (cli, built-in)
- Execution Model Tour (cli, built-in)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Histogram Matching (cli, built-in)
- Label Map Smoothing (cli, built-in)
- Median Image Filter (cli, built-in)
- Model Maker (cli, built-in)
- Model To Label Map (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- Orient Scalar Volume (cli, built-in)
- Otsu Threshold Image Filter (cli, built-in)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Resample Scalar Volume (cli, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- Slice Link Logic (scripted, built-in)
- Slicer4Minute (scripted, built-in)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Subtract Scalar Volumes (cli, built-in)
- View Controllers (loadable, built-in)
- View Controllers Slice Interpolation Bug1926
- Voting Binary Hole Filling Image Filter (cli, built-in)
Georgia Institute of Technology
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Georgia Tech
- Carrera Slice (loadable, bundled in Carrera Slice extension)
IBM
- Annotations (loadable, built-in)
Isomics
- Atlas Tests
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Data (loadable, built-in)
- Data Probe (scripted, built-in)
- DICOM (scripted, built-in)
- Editor (scripted, built-in)
- Endoscopy (scripted, built-in)
- fiber visibility crash2438
- Fiber Bundle To Label Map (scripted, built-in)
- Label Statistics (scripted, built-in)
- label Toggle Bug2049
- Landmark Registration (scripted, bundled in CMFreg extension)
- Models (loadable, built-in)
- Performance Tests
- Reporting (loadable, bundled in Reporting extension)
- RSNA2012Prostate Demo
- RSNAQuant Tutorial
- RSNAVis Tutorial
- Sample Data (scripted, built-in)
- scene Import2428
- Self Tests
- Simple Filters (scripted, built-in)
- slicer Close Crash Bug2590
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Tractography Interactive Seeding (loadable, built-in)
- Transforms (loadable, built-in)
- Vector To Scalar Volume (scripted, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
Isomics Inc.
- DICOMDiffusion Volume Plugin
- DICOMLongitudinal PETCTPlugin
- DICOMScalar Volume Plugin
- DICOMSlicer Data Bundle Plugin
- Slicer MRBTest
- Threshold Threading Test
Isomics, Inc.
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Isomics, pieper@isomics.com
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Kitware
- Cameras (loadable, built-in)
- Colors (loadable, built-in)
- Data (loadable, built-in)
- Data Store (loadable, built-in)
- Double Arrays (loadable, built-in)
- Event Broker
- Expert Automated Registration (cli, built-in)
- Extension Wizard (scripted, built-in)
- Extract Skeleton (cli, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- fiber visibility crash2438
- Fiducial Registration (cli, built-in)
- Gaussian Blur Image Filter (cli, built-in)
- Image Maker (cli, bundled in Image Maker extension)
- label Toggle Bug2049
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Models (loadable, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Port Placement (scripted, bundled in Port Placement extension)
- Reformat (loadable, built-in)
- Sample Data (scripted, built-in)
- Scene Performance (scripted, built-in)
- Simple Filters (scripted, built-in)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Threshold Scalar Volume (cli, built-in)
- Tractography Display (loadable, built-in)
- Transforms (loadable, built-in)
- Units (loadable, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
- Welcome (loadable, built-in)
Kitware)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
MGH
- Pk Modeling (cli, bundled in Pk Modeling extension)
Moka Creative, LLC, kumar.sunil.p@gmail.com
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
MSC/NLM
- Label Object Statistics (scripted, bundled in IASEM extension)
- Simple Filters (scripted, built-in)
Noware
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
Orobix
- Surface Toolbox (scripted, built-in)
PerkLab at Queen's University
- Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
PerkLab, Queen's
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
- Transforms (loadable, built-in)
PerkLab, Queen's University
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
PMH
- Colors Scalar Bar Self Test
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
Queen's
- Data (loadable, built-in)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Subject Hierarchy (loadable, built-in)
- Subject Hierarchy Core Plugins Self Test
- Subject Hierarchy Generic Self Test
Queen's University
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
SAIC-Frederick, NCI-Frederick
- Volume Rendering (loadable, built-in)
SBU
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
SCI Institute
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
Shiga University of Medical Science, Japan, SPL
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
SNR
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
SPL
- DICOM2Full Brain Tractography (scripted, built-in)
- Label To DICOMSEGConverter Self Test
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Reporting Self Test
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
SPL B&W Harvard
SPL, BWH
- ACPCTransform (cli, built-in)
- Annotations (loadable, built-in)
- BSpline To Deformation Field (cli, built-in)
- Cast Scalar Volume (cli, built-in)
- Colors (loadable, built-in)
- Data (loadable, built-in)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- DTIexport (cli, built-in)
- DTIimport (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- Fiducial Registration (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Image Label Combine (cli, built-in)
- Mask Scalar Volume (cli, built-in)
- Merge Models (cli, built-in)
- Model Maker (cli, built-in)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Probe Volume With Model (cli, built-in)
- Reporting (loadable, bundled in Reporting extension)
- Robust Statistics Segmenter (cli, built-in)
- Scene Views (loadable, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Test Grid Transform Registration (cli, built-in)
- Threshold Scalar Volume (cli, built-in)
- Tractography Label Map Seeding (cli, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
- Welcome (loadable, built-in)
SPL, BWH, UPenn
- Merge Models (cli, built-in)
Stony Brook University
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
SUMS
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Surgical Planning Lab
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
UAB
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Uiowa
- DWIConvert (cli, built-in)
UIowa
- DWIConvert (cli, built-in)
UNC
- DWIRician LMMSEFilter (cli, built-in)
- Extract Skeleton (cli, built-in)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- Port Placement (scripted, bundled in Port Placement extension)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
Univ of Michigan
- Surface Registration (scripted, bundled in CMFreg extension)
Univ. of Iowa
University College Cork
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
University of Alabama Birmingham
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
University of Heidelberg
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
University of Iowa
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
University of Iowa) and Andrey Fedorov (SPL
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
UPenn
- Annotations (loadable, built-in)
- EMSegment (loadable, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Scene Views (loadable, built-in)
Utah
- Label Map Smoothing (cli, built-in)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
UVa
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
UWA
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
WashU-St. Louis, dmarcus@wustl.edu
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
while at GE
- Pk Modeling (cli, bundled in Pk Modeling extension)
Modules by contributing organization
62 contributing organizations:
- Asclepios INRIA
- AZE R&D
- Brigham and Women's Hospital
- BWH
- BWH, SPL
- BWH, SUMS
- BWH/UAB
- College of Information Engineering, Zhejiang University of Technology, Hangzhou, China); Xiaolei Chen, Jiashu Zhang(Department of Neurosurgery, PLA General Hospital, Beijing, China
- CRTC
- gatech
- GE
- Georgia Institute of Technology
- Georgia Tech
- IBM
- Isomics
- Isomics Inc.
- Isomics, Inc.
- Isomics, pieper@isomics.com
- Kitware
- Kitware)
- MGH
- Moka Creative, LLC, kumar.sunil.p@gmail.com
- MSC/NLM
- Noware
- Orobix
- Perk Lab at Queen's University
- Perk Lab, Queen's
- Perk Lab, Queen's University
- PMH
- Queen's
- Queen's University
- Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
- SAIC-Frederick, NCI-Frederick
- SBU
- SCI Institute
- Shiga University of Medical Science, Japan, SPL
- SNR
- SPL
- SPL B&W Harvard
- SPL, BWH
- SPL, BWH, UPenn
- Stony Brook University
- SUMS
- Surgical Planning Lab
- UAB
- Uiowa
- UIowa
- UNC
- Univ of Michigan
- Univ. of Iowa
- University College Cork
- University of Alabama Birmingham
- University of Heidelberg
- University of Iowa
- University of Iowa) and Andrey Fedorov (SPL
- UPenn
- Utah
- UVa
- UWA
- Wash U-St. Louis, dmarcus@wustl.edu
- while at GE
Modules by contributing individual
148 contributing individuals:
- Akila Viswanathan
- Alan Morris (Utah)
- Alex Yarmakovich (Isomics)
- Alex Yarmarkovich (Kitware))
- Ali Ghayoor
- Alireza Mehrtash (SPL and BWH)
- Allen Tannenbaum (Stony Brook University)
- Analysis Laboratory
- Andinet Enquobahrie (Kitware)
- Andras Lasso (PerkLab, Queen's University)
- Andreas Freudling (SPL, BWH)
- Andrey Fedorov (SPL B&W Harvard)
- Andriy Kot (CRTC)
- Anonymous
- Antonio Damato
- Antonio Tristan Vega (UVa)
- Arie Nakhmani (UAB)
- Atsushi Yamada (SUMS)
- Beatriz Paniagua from Department of Orthodontics (UNC)
- Benjamin Long (Kitware)
- Bill Lorensen (Noware)
- Brad Davis
- Bradley Lowekamp (MSC/NLM)
- BWH
- Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez (Kitware))
- Casey B Goodlett (Kitware)
- Charles Marion (Kitware)
- Csaba Pinter (PerkLab, Queen's University)
- Dan Marcus (Washington University in St. Louis)
- Daniel Blezek (GE)
- Daniel Haehn (UPenn)
- Danny Perry (Utah)
- Demian Wassermann (Brigham and Women's Hospital)
- Dinggang Shen (UNC)
- Dirk Padfield (GE)
- Dominik Meier (SPL, BWH)
- Ethan Ulrich (Univ. of Iowa)
- ez (UVa)
- Fotis Drakopoulos (CRTC)
- Francois Budin (NIRAL, UNC)
- Franklin King (PerkLab, Queen's University)
- Greg Gardner (Utah)
- Greg Harris
- Guido Gerig (UNC)
- Guillaume Pernelle
- Hans J. Johnson
- Hans Johnson (UIowa)
- hans-johnson -at- uiowa.edu
- http://www.psychiatry.uiowa.edu
- Ivan Kolesov (Stony Brook University)
- Jan Egger
- Jayender Jagadeesan (BWH)
- Jean-Baptiste Berger (Kitware)
- Jean-Christophe Fillion-Robin (Kitware)
- Jim Miller (GE)
- Johan Andruejol (Kitware)
- John Evans (MGH)
- Jonathan Bronson (SCI Institute)
- Josh Cates (Utah)
- Joy Matsui (UIowa)
- Julien Finet (Kitware)
- Julien Jomier (Kitware)
- Junichi Tokuda (BWH)
- Kent Williams (UIowa)
- Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)
- Kilian Pohl (UPenn)
- Koichiro Murakami (BWH, SUMS)
- Lauren Barber
- Lauren O'Donnell (SPL, BWH)
- Laurent Chauvin (BWH)
- Liang-Jia Zhu (UAB)
- Liangjia Zhu (Stony Brook University)
- Luca Antiga (Orobix)
- Luis G. Torres (UNC)
- Luping Fang (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
- Marc Niethammer (UNC)
- Marcel Prastawa prastawa@sci.utah.edu
- Mark Scully (Uiowa)
- Markus Van Tol (University of Iowa) and Andrey Fedorov (SPL)
- Martin Styner (UNC)
- Mason Winsauer
- Matt Lougheed (PerkLab, Queen's University)
- Matthew Holden (Queen's University)
- Matthew S. Holden (Queen's University)
- Matthew Woehlke (Kitware)
- Michael Jeulin-Lagarrigue (Kitware)
- Minjeong Kim (UNC)
- Nabgha Fahrat
- Neuro Image Resarch
- Nicholas Herlambang (AZE R&D)
- Nick Tustison (UPenn)
- Nicole Aucoin (BWH)
- Nigel Goh (UWA)
- Nikos Chrisochoides (CRTC)
- Olivier Clatz (Asclepios INRIA) and Nikos Chrisochoides (CRTC)
- Pat Marion (Kitware)
- Patricio Vela (Georgia Institute of Technology)
- Paul Mercea (University of Heidelberg)
- Pengdong Xiao (Department of Orthodontics, UNC)
- Peter Black (BWH)
- Peter Karasev (Georgia Tech)
- Peter Savadjiev (Kitware))
- Pierre Seroul (UNC)
- Pietro Nardelli (University College Cork)
- Polina Goll
- Qing Pan (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
- Raul San Jose (SPL, BWH)
- Rob Mac Leod (Utah)
- Ron Kikinis (BWH)
- Ross Whitaker (Utah)
- Ruifeng Chen (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
- S
- Sam Song
- Santiago Aja Fern (UVa)
- Sebastien Barré (Kitware)
- Sebastien Barre
- Shigeyuki Naka (SUMS)
- Soichiro Tani (SUMS)
- Sonia Pujol (SPL, BWH)
- Stephen Aylward (Kitware)
- Stephen R Aylward (Kitware)
- Steve Pieper (Isomics Inc.)
- Sunil Kumar (Moka Creative, LLC, kumar.sunil.p@gmail.com)
- Sylvain Bouix (BWH)
- Tamas Ungi (PerkLab, Queen's University)
- the University of North Carolina at Chapel Hill (UNC)
- Tina Kapur
- Tobias Penzkofer
- Tohru Tani (SUMS)
- UNC Medical School
- Uof M School Of Dentistry
- Uof M School of Dentistry
- Vince Magnotta (UIowa)
- Vincent A. Magnotta
- Vincent Magnotta
- Vinicius Boen (Univ of Michigan)
- Wendy Plesniak (SPL, BWH)
- Xiaodong Tao (GE)
- Xiaofeng Liu (GE GLobal Research)
- Xiaojun Chen
- y Wells
- Yanling Liu (SAIC-Frederick, NCI-Frederick)
- Yi Gao (BWH/UAB)
- Yinglin Lee (SPL, BWH)
- Yingxuan Zhu (GE)
- Yixun Liu (CRTC)
- Yong Zhang (IBM)
- Yumin Yuan
Akila Viswanathan
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Alan Morris
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Alex Yarmakovich
- Models (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
Alex Yarmarkovich
- Data (loadable, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Image Label Combine (cli, built-in)
- Transforms (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
Ali Ghayoor
- BRAINSTransform Convert (cli, built-in)
- Perform Metric Test (cli, built-in)
Alireza Mehrtash
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
Allen Tannenbaum
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Robust Statistics Segmenter (cli, built-in)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Analysis Laboratory
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
Andinet Enquobahrie
- Port Placement (scripted, bundled in Port Placement extension)
Andras Lasso
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
- Transforms (loadable, built-in)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
Andreas Freudling
- Volume Rendering (loadable, built-in)
Andrey Fedorov
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- BSpline To Deformation Field (cli, built-in)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Change Tracker Self Test
- Crop Volume (loadable, built-in)
- DICOMRWVMPlugin
- DICOMSegmentation Plugin
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
- Label To DICOMSEGConverter Self Test
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Multi Volume Importer Plugin
- N4ITKBias Field Correction (cli, built-in)
- PBNRR (cli, bundled in PBNRR extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Reporting (loadable, bundled in Reporting extension)
- Reporting Self Test
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
Andriy Kot
Anonymous
- CLIROITest (cli, built-in)
- EMSegment Transform To New Format (cli, built-in)
Antonio Damato
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Antonio Tristan Vega
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
Arie Nakhmani
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
Atsushi Yamada
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Beatriz Paniagua from Department of Orthodontics
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Benjamin Long
- Sample Data (scripted, built-in)
Bill Lorensen
- Add Scalar Volumes (cli, built-in)
- Checker Board Filter (cli, built-in)
- Create DICOMSeries (cli, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Diffusion Tensor Test (cli, built-in)
- Execution Model Tour (cli, built-in)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Histogram Matching (cli, built-in)
- Median Image Filter (cli, built-in)
- Model Maker (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- Orient Scalar Volume (cli, built-in)
- Otsu Threshold Image Filter (cli, built-in)
- Resample Scalar Volume (cli, built-in)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Subtract Scalar Volumes (cli, built-in)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- Voting Binary Hole Filling Image Filter (cli, built-in)
Brad Davis
- EMSegment Command Line (cli, built-in)
Bradley Lowekamp
- Bin Shrink (cli, bundled in IASEM extension)
- Double Threshold Effect (scripted, bundled in IASEM extension)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Simple Filters (scripted, built-in)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
BWH
- DICOMSegmentation Plugin
- Multi Volume Importer Plugin
Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
Casey B Goodlett
- Expert Automated Registration (cli, built-in)
- Fiducial Registration (cli, built-in)
Charles Marion
- Data Store (loadable, built-in)
Csaba Pinter
- Data (loadable, built-in)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Subject Hierarchy (loadable, built-in)
- Subject Hierarchy Core Plugins Self Test
- Subject Hierarchy Generic Self Test
Dan Marcus
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Daniel Blezek
- Execution Model Tour (cli, built-in)
Daniel Haehn
- Annotations (loadable, built-in)
- EMSegment (loadable, built-in)
- EMSegment Command Line (cli, built-in)
- Merge Models (cli, built-in)
- Scene Views (loadable, built-in)
Danny Perry
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Demian Wassermann
- DICOM2Full Brain Tractography (scripted, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Fiber Bundle Label Select (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- test tractography display
- Tractography Label Map Seeding (cli, built-in)
Dinggang Shen
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
Dirk Padfield
- Label Map Smoothing (cli, built-in)
Dominik Meier
- Fiducial Registration (cli, built-in)
Ethan Ulrich
- DICOMPETSUVPlugin
- DICOMRWVMPlugin
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
ez
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
Fotis Drakopoulos
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- PBNRR (cli, bundled in PBNRR extension)
Francois Budin
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
Franklin King
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Transforms (loadable, built-in)
Greg Gardner
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Greg Harris
- BRAINSDemon Warp (cli, built-in)
- BRAINSResample (cli, built-in)
- VBRAINSDemon Warp (cli, built-in)
Guido Gerig
- Extract Skeleton (cli, built-in)
Guillaume Pernelle
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Hans J. Johnson
- BRAINSDemon Warp (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- VBRAINSDemon Warp (cli, built-in)
Hans Johnson
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- DWIConvert (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
hans-johnson -at- uiowa.edu
- BRAINSFit (cli, built-in)
- BRAINSROIAuto (cli, built-in)
http://www.psychiatry.uiowa.edu
- BRAINSFit (cli, built-in)
- BRAINSROIAuto (cli, built-in)
Ivan Kolesov
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
Jan Egger
Jayender Jagadeesan
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Jean-Baptiste Berger
- Data Store (loadable, built-in)
Jean-Christophe Fillion-Robin
- CLI4Test
- Data Store (loadable, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- fiber visibility crash2438
- label Toggle Bug2049
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Sample Data (scripted, built-in)
- Simple Filters (scripted, built-in)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Transforms (loadable, built-in)
- View Controllers (loadable, built-in)
- Welcome (loadable, built-in)
Jim Miller
- Charting (scripted, built-in)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Simple Region Growing Segmentation (cli, built-in)
- Slice Link Logic (scripted, built-in)
- Slicer4Minute (scripted, built-in)
- View Controllers (loadable, built-in)
- View Controllers Slice Interpolation Bug1926
Johan Andruejol
- Units (loadable, built-in)
John Evans
- Pk Modeling (cli, bundled in Pk Modeling extension)
Jonathan Bronson
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
Josh Cates
- Label Map Smoothing (cli, built-in)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Joy Matsui
- DWIConvert (cli, built-in)
Julien Finet
- Cameras (loadable, built-in)
- Colors (loadable, built-in)
- Data (loadable, built-in)
- Double Arrays (loadable, built-in)
- Event Broker
- Image Maker (cli, bundled in Image Maker extension)
- Models (loadable, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Scene Performance (scripted, built-in)
- Threshold Scalar Volume (cli, built-in)
- Tractography Display (loadable, built-in)
- Transforms (loadable, built-in)
- Units (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
Julien Jomier
- Gaussian Blur Image Filter (cli, built-in)
Junichi Tokuda
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Dilate Label (cli, bundled in Erode Dilate Label extension)
- Erode Label (cli, bundled in Erode Dilate Label extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
Kent Williams
- BRAINSDWICleanup (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- DWIConvert (cli, built-in)
Kevin Wang
- Colors Scalar Bar Self Test
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
Kilian Pohl
- Annotations (loadable, built-in)
- Change Tracker (scripted, bundled in Change Tracker extension)
- EMSegment (loadable, built-in)
- EMSegment Command Line (cli, built-in)
- Scene Views (loadable, built-in)
Koichiro Murakami
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
Lauren Barber
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Lauren O'Donnell
- Fiber Bundle Label Select (cli, built-in)
- Probe Volume With Model (cli, built-in)
Laurent Chauvin
- Curve Maker (scripted, bundled in Curve Maker extension)
- Dice Computation (loadable, bundled in Dice Computation extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
Liang-Jia Zhu
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Liangjia Zhu
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
Luca Antiga
- Surface Toolbox (scripted, built-in)
Luis G. Torres
- Port Placement (scripted, bundled in Port Placement extension)
Luping Fang
- Gyro Guide (scripted, bundled in Gyro Guide extension)
Marc Niethammer
- DWIRician LMMSEFilter (cli, built-in)
Marcel Prastawa prastawa@sci.utah.edu
Mark Scully
- DWIConvert (cli, built-in)
Markus Van Tol
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
Martin Styner
- Extract Skeleton (cli, built-in)
Mason Winsauer
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
Matt Lougheed
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
Matthew Holden
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
Matthew S. Holden
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
Matthew Woehlke
- Extension Wizard (scripted, built-in)
Michael Jeulin-Lagarrigue
- Reformat (loadable, built-in)
Minjeong Kim
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
Nabgha Fahrat
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Neuro Image Resarch
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
Nicholas Herlambang
- JRC2013Vis
Nick Tustison
- N4ITKBias Field Correction (cli, built-in)
Nicole Aucoin
- ACPCTransform (cli, built-in)
- Add Many Markups Fiducial Test
- Annotations (loadable, built-in)
- Cast Scalar Volume (cli, built-in)
- Colors (loadable, built-in)
- Colors Scalar Bar Self Test
- Data (loadable, built-in)
- Fiducial Layout Switch Bug1914
- Grayscale Model Maker (cli, built-in)
- Markups (loadable, built-in)
- Markups In Compare Viewers Self Test
- Markups In Views Self Test
- Mask Scalar Volume (cli, built-in)
- Merge Models (cli, built-in)
- Model Maker (cli, built-in)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Neurosurgical Planning Tutorial Markups Self Test
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Reporting (loadable, bundled in Reporting extension)
- Scene Views (loadable, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Threshold Scalar Volume (cli, built-in)
- Volume Rendering Scene Close (scripted, built-in)
- Volumes (loadable, built-in)
Nigel Goh
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
Nikos Chrisochoides
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- PBNRR (cli, bundled in PBNRR extension)
Olivier Clatz
Pat Marion
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
Patricio Vela
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Paul Mercea
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
Pengdong Xiao
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Peter Black
- Change Tracker (scripted, bundled in Change Tracker extension)
Peter Karasev
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
Peter Savadjiev
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
Pierre Seroul
- Extract Skeleton (cli, built-in)
Pietro Nardelli
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
Polina Goll
- EMSegment Command Line (cli, built-in)
Qing Pan
- Gyro Guide (scripted, bundled in Gyro Guide extension)
Raul San Jose
- Diffusion Tensor Scalar Measurements (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- Tractography Label Map Seeding (cli, built-in)
Rob MacLeod
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Ron Kikinis
- ACPCTransform (cli, built-in)
- Cast Scalar Volume (cli, built-in)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Crop Volume (loadable, built-in)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- Mask Scalar Volume (cli, built-in)
- Merge Models (cli, built-in)
- Model Maker (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Robust Statistics Segmenter (cli, built-in)
- Surface Toolbox (scripted, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Threshold Scalar Volume (cli, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
Ross Whitaker
- Label Map Smoothing (cli, built-in)
Ruifeng Chen
- Gyro Guide (scripted, bundled in Gyro Guide extension)
S
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Sam Song
Santiago Aja Fern
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
Sebastien Barré
- Cameras (loadable, built-in)
Sebastien Barre
- EMSegment Command Line (cli, built-in)
Shigeyuki Naka
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Soichiro Tani
- Corner Annotation (scripted, bundled in Corner Annotation extension)
Sonia Pujol
- Dice Computation (loadable, bundled in Dice Computation extension)
- DTIexport (cli, built-in)
- DTIimport (cli, built-in)
Stephen Aylward
- Extract Skeleton (cli, built-in)
- Gaussian Blur Image Filter (cli, built-in)
Stephen R Aylward
- Expert Automated Registration (cli, built-in)
Steve Pieper
- Atlas Tests
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Data Probe (scripted, built-in)
- DICOM (scripted, built-in)
- DICOMDiffusion Volume Plugin
- DICOMLongitudinal PETCTPlugin
- DICOMScalar Volume Plugin
- DICOMSlicer Data Bundle Plugin
- Editor (scripted, built-in)
- Endoscopy (scripted, built-in)
- fiber visibility crash2438
- Fiber Bundle To Label Map (scripted, built-in)
- Label Statistics (scripted, built-in)
- label Toggle Bug2049
- Landmark Registration (scripted, bundled in CMFreg extension)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- Performance Tests
- Reporting (loadable, bundled in Reporting extension)
- RSNA2012Prostate Demo
- RSNAQuant Tutorial
- RSNAVis Tutorial
- Sample Data (scripted, built-in)
- scene Import2428
- Self Tests
- Simple Filters (scripted, built-in)
- slicer Close Crash Bug2590
- Slicer MRBTest
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Threshold Threading Test
- Vector To Scalar Volume (scripted, built-in)
- View Controllers (loadable, built-in)
- Volumes (loadable, built-in)
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Sunil Kumar
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Sylvain Bouix
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Tamas Ungi
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
the University of North Carolina at Chapel Hill
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
Tina Kapur
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Tobias Penzkofer
Tohru Tani
- Corner Annotation (scripted, bundled in Corner Annotation extension)
UNC Medical School
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
UofM School Of Dentistry
UofM School of Dentistry
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
Vince Magnotta
- DWIConvert (cli, built-in)
Vincent A. Magnotta
- BRAINSLabel Stats (cli, built-in)
Vincent Magnotta
- BRAINSResample (cli, built-in)
Vinicius Boen
- Apply Matrix (cli, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
- Surface Registration (scripted, bundled in CMFreg extension)
Wendy Plesniak
- Annotations (loadable, built-in)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Scene Views (loadable, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- View Controllers (loadable, built-in)
- Welcome (loadable, built-in)
Xiaodong Tao
- DWIConvert (cli, built-in)
- Model To Label Map (cli, built-in)
Xiaofeng Liu
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
Xiaojun Chen
y Wells
- i Gyne (scripted, bundled in i Gyne extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
Yanling Liu
- Volume Rendering (loadable, built-in)
Yi Gao
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- i Gyne (scripted, bundled in i Gyne extension)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Robust Statistics Segmenter (cli, built-in)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
Yinglin Lee
- Test Grid Transform Registration (cli, built-in)
Yingxuan Zhu
- Pk Modeling (cli, bundled in Pk Modeling extension)
Yixun Liu
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- PBNRR (cli, bundled in PBNRR extension)
Yong Zhang
- Annotations (loadable, built-in)
Yumin Yuan
- EMSegment Command Line (cli, built-in)
Modules by contributing individual
148 contributing individuals:
- Akila Viswanathan
- Alan Morris (Utah)
- Alex Yarmakovich (Isomics)
- Alex Yarmarkovich (Kitware))
- Ali Ghayoor
- Alireza Mehrtash (SPL and BWH)
- Allen Tannenbaum (Stony Brook University)
- Analysis Laboratory
- Andinet Enquobahrie (Kitware)
- Andras Lasso (PerkLab, Queen's University)
- Andreas Freudling (SPL, BWH)
- Andrey Fedorov (SPL B&W Harvard)
- Andriy Kot (CRTC)
- Anonymous
- Antonio Damato
- Antonio Tristan Vega (UVa)
- Arie Nakhmani (UAB)
- Atsushi Yamada (SUMS)
- Beatriz Paniagua from Department of Orthodontics (UNC)
- Benjamin Long (Kitware)
- Bill Lorensen (Noware)
- Brad Davis
- Bradley Lowekamp (MSC/NLM)
- BWH
- Carl-Fredrik Westin. The directional iterators were contributed by Luis Ibanez (Kitware))
- Casey B Goodlett (Kitware)
- Charles Marion (Kitware)
- Csaba Pinter (PerkLab, Queen's University)
- Dan Marcus (Washington University in St. Louis)
- Daniel Blezek (GE)
- Daniel Haehn (UPenn)
- Danny Perry (Utah)
- Demian Wassermann (Brigham and Women's Hospital)
- Dinggang Shen (UNC)
- Dirk Padfield (GE)
- Dominik Meier (SPL, BWH)
- Ethan Ulrich (Univ. of Iowa)
- ez (UVa)
- Fotis Drakopoulos (CRTC)
- Francois Budin (NIRAL, UNC)
- Franklin King (PerkLab, Queen's University)
- Greg Gardner (Utah)
- Greg Harris
- Guido Gerig (UNC)
- Guillaume Pernelle
- Hans J. Johnson
- Hans Johnson (UIowa)
- hans-johnson -at- uiowa.edu
- http://www.psychiatry.uiowa.edu
- Ivan Kolesov (Stony Brook University)
- Jan Egger
- Jayender Jagadeesan (BWH)
- Jean-Baptiste Berger (Kitware)
- Jean-Christophe Fillion-Robin (Kitware)
- Jim Miller (GE)
- Johan Andruejol (Kitware)
- John Evans (MGH)
- Jonathan Bronson (SCI Institute)
- Josh Cates (Utah)
- Joy Matsui (UIowa)
- Julien Finet (Kitware)
- Julien Jomier (Kitware)
- Junichi Tokuda (BWH)
- Kent Williams (UIowa)
- Kevin Wang (Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto)
- Kilian Pohl (UPenn)
- Koichiro Murakami (BWH, SUMS)
- Lauren Barber
- Lauren O'Donnell (SPL, BWH)
- Laurent Chauvin (BWH)
- Liang-Jia Zhu (UAB)
- Liangjia Zhu (Stony Brook University)
- Luca Antiga (Orobix)
- Luis G. Torres (UNC)
- Luping Fang (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
- Marc Niethammer (UNC)
- Marcel Prastawa prastawa@sci.utah.edu
- Mark Scully (Uiowa)
- Markus Van Tol (University of Iowa) and Andrey Fedorov (SPL)
- Martin Styner (UNC)
- Mason Winsauer
- Matt Lougheed (PerkLab, Queen's University)
- Matthew Holden (Queen's University)
- Matthew S. Holden (Queen's University)
- Matthew Woehlke (Kitware)
- Michael Jeulin-Lagarrigue (Kitware)
- Minjeong Kim (UNC)
- Nabgha Fahrat
- Neuro Image Resarch
- Nicholas Herlambang (AZE R&D)
- Nick Tustison (UPenn)
- Nicole Aucoin (BWH)
- Nigel Goh (UWA)
- Nikos Chrisochoides (CRTC)
- Olivier Clatz (Asclepios INRIA) and Nikos Chrisochoides (CRTC)
- Pat Marion (Kitware)
- Patricio Vela (Georgia Institute of Technology)
- Paul Mercea (University of Heidelberg)
- Pengdong Xiao (Department of Orthodontics, UNC)
- Peter Black (BWH)
- Peter Karasev (Georgia Tech)
- Peter Savadjiev (Kitware))
- Pierre Seroul (UNC)
- Pietro Nardelli (University College Cork)
- Polina Goll
- Qing Pan (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
- Raul San Jose (SPL, BWH)
- Rob Mac Leod (Utah)
- Ron Kikinis (BWH)
- Ross Whitaker (Utah)
- Ruifeng Chen (College of Information Engineering, Zhejiang University of Technology, Hangzhou, China)
- S
- Sam Song
- Santiago Aja Fern (UVa)
- Sebastien Barré (Kitware)
- Sebastien Barre
- Shigeyuki Naka (SUMS)
- Soichiro Tani (SUMS)
- Sonia Pujol (SPL, BWH)
- Stephen Aylward (Kitware)
- Stephen R Aylward (Kitware)
- Steve Pieper (Isomics Inc.)
- Sunil Kumar (Moka Creative, LLC, kumar.sunil.p@gmail.com)
- Sylvain Bouix (BWH)
- Tamas Ungi (PerkLab, Queen's University)
- the University of North Carolina at Chapel Hill (UNC)
- Tina Kapur
- Tobias Penzkofer
- Tohru Tani (SUMS)
- UNC Medical School
- Uof M School Of Dentistry
- Uof M School of Dentistry
- Vince Magnotta (UIowa)
- Vincent A. Magnotta
- Vincent Magnotta
- Vinicius Boen (Univ of Michigan)
- Wendy Plesniak (SPL, BWH)
- Xiaodong Tao (GE)
- Xiaofeng Liu (GE GLobal Research)
- Xiaojun Chen
- y Wells
- Yanling Liu (SAIC-Frederick, NCI-Frederick)
- Yi Gao (BWH/UAB)
- Yinglin Lee (SPL, BWH)
- Yingxuan Zhu (GE)
- Yixun Liu (CRTC)
- Yong Zhang (IBM)
- Yumin Yuan
Modules by type
3 types:
cli
- ABC (cli, bundled in ABC extension)
- ACPCTransform (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
- Apply Matrix (cli, bundled in CMFreg extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- BRAINSDemon Warp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabel Stats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- BSpline To Deformation Field (cli, built-in)
- Cast Scalar Volume (cli, built-in)
- Checker Board Filter (cli, built-in)
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
- CLIROITest (cli, built-in)
- Create DICOMSeries (cli, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Tensor Test (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Dilate Label (cli, bundled in Erode Dilate Label extension)
- Downsize (cli, bundled in CMFreg extension)
- DTIexport (cli, built-in)
- DTIimport (cli, built-in)
- DWIConvert (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
- EMSegment Command Line (cli, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Erode Label (cli, bundled in Erode Dilate Label extension)
- Execution Model Tour (cli, built-in)
- Expert Automated Registration (cli, built-in)
- Extract Skeleton (cli, built-in)
- Fiber Bundle Label Select (cli, built-in)
- Fiducial Registration (cli, built-in)
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
- Gaussian Blur Image Filter (cli, built-in)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Growing (cli, bundled in CMFreg extension)
- Histogram Matching (cli, built-in)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
- Image Label Combine (cli, built-in)
- Image Maker (cli, bundled in Image Maker extension)
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Label Map Smoothing (cli, built-in)
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Mask Scalar Volume (cli, built-in)
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Median Image Filter (cli, built-in)
- Merge Models (cli, built-in)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
- Model Maker (cli, built-in)
- Model To Label Map (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Non Growing (cli, bundled in CMFreg extension)
- Orient Scalar Volume (cli, built-in)
- Otsu Threshold Image Filter (cli, built-in)
- PBNRR (cli, bundled in PBNRR extension)
- Perform Metric Test (cli, built-in)
- PETStandard Uptake Value Computation (cli, built-in)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
- Pk Modeling (cli, bundled in Pk Modeling extension)
- Probe Volume With Model (cli, built-in)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
- Resample Scalar Volume (cli, built-in)
- Robust Statistics Segmenter (cli, built-in)
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
- Simple Region Growing Segmentation (cli, built-in)
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
- Subtract Scalar Volumes (cli, built-in)
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
- Test Grid Transform Registration (cli, built-in)
- Threshold Scalar Volume (cli, built-in)
- Tractography Label Map Seeding (cli, built-in)
- VBRAINSDemon Warp (cli, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
loadable
- Annotations (loadable, built-in)
- Cameras (loadable, built-in)
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Colors (loadable, built-in)
- Crop Volume (loadable, built-in)
- Data (loadable, built-in)
- Data Store (loadable, built-in)
- Dice Computation (loadable, bundled in Dice Computation extension)
- Double Arrays (loadable, built-in)
- EMSegment (loadable, built-in)
- EMSegment Quick (loadable, built-in)
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- Markups (loadable, built-in)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Models (loadable, built-in)
- Multi Volume Explorer (loadable, built-in)
- Open IGTLink IF (loadable, built-in)
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Reformat (loadable, built-in)
- Reporting (loadable, bundled in Reporting extension)
- Scene Views (loadable, built-in)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
- Subject Hierarchy (loadable, built-in)
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
- Tractography Display (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Transforms (loadable, built-in)
- Units (loadable, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volumes (loadable, built-in)
- Welcome (loadable, built-in)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
scripted
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Change Tracker (scripted, bundled in Change Tracker extension)
- Charting (scripted, built-in)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Corner Annotation (scripted, bundled in Corner Annotation extension)
- Curve Maker (scripted, bundled in Curve Maker extension)
- Data Probe (scripted, built-in)
- DICOM (scripted, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
- Double Threshold Effect (scripted, bundled in IASEM extension)
- Editor (scripted, built-in)
- Endoscopy (scripted, built-in)
- Extension Wizard (scripted, built-in)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
- Fiber Bundle To Label Map (scripted, built-in)
- Gyro Guide (scripted, bundled in Gyro Guide extension)
- i Gyne (scripted, bundled in i Gyne extension)
- KUtil (scripted, bundled in Carrera Slice extension)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Label Statistics (scripted, built-in)
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
- Landmark Registration (scripted, bundled in CMFreg extension)
- Multi Volume Importer (scripted, built-in)
- Needle Finder (scripted, bundled in Needle Finder extension)
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
- Port Placement (scripted, bundled in Port Placement extension)
- Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Sample Data (scripted, built-in)
- Scene Performance (scripted, built-in)
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Simple Filters (scripted, built-in)
- Slice Link Logic (scripted, built-in)
- Slicer4Minute (scripted, built-in)
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
- Surface Registration (scripted, bundled in CMFreg extension)
- Surface Toolbox (scripted, built-in)
- TCIABrowser (scripted, bundled in TCIABrowser extension)
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
- Vector To Scalar Volume (scripted, built-in)
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
- Volume Rendering Scene Close (scripted, built-in)
- Window Level Effect (scripted, bundled in Window Level Effect extension)
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Modules by type
3 types:
Modules by extension
46 extensions:
- ABC
- Airway Segmentation
- builtin
- Carrera Slice
- CBC 3D I2MConversion
- Change Tracker
- Cleaver Extension
- CMFreg
- Corner Annotation
- Curve Maker
- Dice Computation
- Erode Dilate Label
- Fast Grow Cut Effect
- Finsler Tractography
- Gel Dosimetry Analysis
- Gyro Guide
- IASEM
- i Gyne
- Image Maker
- Intensity Segmenter
- LAScar Segmenter
- Longitudinal PETCT
- MABMIS
- Matlab Bridge
- Multidim Data
- Needle Finder
- PBNRR
- Percutaneous Approach Analysis
- Perk Tutor
- PETDICOMExtension
- Pk Modeling
- Port Placement
- Py Dev Remote Debug
- Reporting
- Scoliosis
- Segmentation Aided Registration
- Slicer To Kiwi Exporter
- Sobolev Segmenter
- Swiss Skull Stripper
- TCIABrowser
- Thingiverse Browser
- Tracker Stabilizer
- Volume Clip
- Window Level Effect
- XNATSlicer
ABC
AirwaySegmentation
- Airway Segmentation CLI (cli, bundled in Airway Segmentation extension)
builtin
- ACPCTransform (cli, built-in)
- Add Scalar Volumes (cli, built-in)
- Annotations (loadable, built-in)
- BRAINSDemon Warp (cli, built-in)
- BRAINSDWICleanup (cli, built-in)
- BRAINSFit (cli, built-in)
- BRAINSLabel Stats (cli, built-in)
- BRAINSResample (cli, built-in)
- BRAINSResize (cli, built-in)
- BRAINSROIAuto (cli, built-in)
- BRAINSTransform Convert (cli, built-in)
- BSpline To Deformation Field (cli, built-in)
- Cameras (loadable, built-in)
- Cast Scalar Volume (cli, built-in)
- Charting (scripted, built-in)
- Checker Board Filter (cli, built-in)
- CLIROITest (cli, built-in)
- Colors (loadable, built-in)
- Create DICOMSeries (cli, built-in)
- Crop Volume (loadable, built-in)
- Curvature Anisotropic Diffusion (cli, built-in)
- Data (loadable, built-in)
- Data Probe (scripted, built-in)
- Data Store (loadable, built-in)
- DICOM (scripted, built-in)
- DICOM2Full Brain Tractography (scripted, built-in)
- Diffusion Tensor Scalar Measurements (cli, built-in)
- Diffusion Tensor Test (cli, built-in)
- Diffusion Weighted Volume Masking (cli, built-in)
- Double Arrays (loadable, built-in)
- DTIexport (cli, built-in)
- DTIimport (cli, built-in)
- DWIConvert (cli, built-in)
- DWIJoint Rician LMMSEFilter (cli, built-in)
- DWIRician LMMSEFilter (cli, built-in)
- DWITo DTIEstimation (cli, built-in)
- DWIUnbiased Non Local Means Filter (cli, built-in)
- Editor (scripted, built-in)
- EMSegment (loadable, built-in)
- EMSegment Command Line (cli, built-in)
- EMSegment Quick (loadable, built-in)
- EMSegment Transform To New Format (cli, built-in)
- Endoscopy (scripted, built-in)
- Execution Model Tour (cli, built-in)
- Expert Automated Registration (cli, built-in)
- Extension Wizard (scripted, built-in)
- Extract Skeleton (cli, built-in)
- Fiber Bundle Label Select (cli, built-in)
- Fiber Bundle To Label Map (scripted, built-in)
- Fiducial Registration (cli, built-in)
- Gaussian Blur Image Filter (cli, built-in)
- Gradient Anisotropic Diffusion (cli, built-in)
- Grayscale Fill Hole Image Filter (cli, built-in)
- Grayscale Grind Peak Image Filter (cli, built-in)
- Grayscale Model Maker (cli, built-in)
- Histogram Matching (cli, built-in)
- Image Label Combine (cli, built-in)
- Label Map Smoothing (cli, built-in)
- Label Statistics (scripted, built-in)
- Markups (loadable, built-in)
- Mask Scalar Volume (cli, built-in)
- Median Image Filter (cli, built-in)
- Merge Models (cli, built-in)
- Model Maker (cli, built-in)
- Models (loadable, built-in)
- Model To Label Map (cli, built-in)
- Multiply Scalar Volumes (cli, built-in)
- Multi Volume Explorer (loadable, built-in)
- Multi Volume Importer (scripted, built-in)
- N4ITKBias Field Correction (cli, built-in)
- Open IGTLink IF (loadable, built-in)
- Orient Scalar Volume (cli, built-in)
- Otsu Threshold Image Filter (cli, built-in)
- Perform Metric Test (cli, built-in)
- PETStandard Uptake Value Computation (cli, built-in)
- Probe Volume With Model (cli, built-in)
- Reformat (loadable, built-in)
- Resample DTIVolume (cli, built-in)
- Resample Scalar Vector DWIVolume (cli, built-in)
- Resample Scalar Volume (cli, built-in)
- Robust Statistics Segmenter (cli, built-in)
- Sample Data (scripted, built-in)
- Scene Performance (scripted, built-in)
- Scene Views (loadable, built-in)
- Simple Filters (scripted, built-in)
- Simple Region Growing Segmentation (cli, built-in)
- Slice Link Logic (scripted, built-in)
- Slicer4Minute (scripted, built-in)
- Subject Hierarchy (loadable, built-in)
- Subtract Scalar Volumes (cli, built-in)
- Surface Toolbox (scripted, built-in)
- Test Grid Transform Registration (cli, built-in)
- Threshold Scalar Volume (cli, built-in)
- Tractography Display (loadable, built-in)
- Tractography Interactive Seeding (loadable, built-in)
- Tractography Label Map Seeding (cli, built-in)
- Transforms (loadable, built-in)
- Units (loadable, built-in)
- VBRAINSDemon Warp (cli, built-in)
- Vector To Scalar Volume (scripted, built-in)
- View Controllers (loadable, built-in)
- Volume Rendering (loadable, built-in)
- Volume Rendering Scene Close (scripted, built-in)
- Volumes (loadable, built-in)
- Voting Binary Hole Filling Image Filter (cli, built-in)
- Welcome (loadable, built-in)
CarreraSlice
- Carrera Slice (loadable, bundled in Carrera Slice extension)
- Carrera Slice Effect (scripted, bundled in Carrera Slice extension)
- Fast Grow Cut Segmenter (loadable, bundled in Carrera Slice extension)
- KUtil (scripted, bundled in Carrera Slice extension)
CBC_3D_I2MConversion
- Body Centric Cubic Mesh (cli, bundled in CBC 3D I2MConversion extension)
- Mesh Compression (cli, bundled in CBC 3D I2MConversion extension)
ChangeTracker
- Change Tracker (scripted, bundled in Change Tracker extension)
- Intensity Difference Metric (cli, bundled in Change Tracker extension)
CleaverExtension
- Cleaver CLI (cli, bundled in Cleaver Extension extension)
CMFreg
- Apply Matrix (cli, bundled in CMFreg extension)
- Compare Volumes (scripted, bundled in CMFreg extension)
- Downsize (cli, bundled in CMFreg extension)
- Growing (cli, bundled in CMFreg extension)
- Label Addition (cli, bundled in CMFreg extension)
- Label Extraction (cli, bundled in CMFreg extension)
- Landmark Registration (scripted, bundled in CMFreg extension)
- Mask Creation (cli, bundled in CMFreg extension)
- Non Growing (cli, bundled in CMFreg extension)
- Surface Registration (scripted, bundled in CMFreg extension)
CornerAnnotation
- Corner Annotation (scripted, bundled in Corner Annotation extension)
CurveMaker
- Curve Maker (scripted, bundled in Curve Maker extension)
DiceComputation
- Dice Computation (loadable, bundled in Dice Computation extension)
ErodeDilateLabel
- Dilate Label (cli, bundled in Erode Dilate Label extension)
- Erode Label (cli, bundled in Erode Dilate Label extension)
FastGrowCutEffect
- Fast Grow Cut (loadable, bundled in Fast Grow Cut Effect extension)
- Fast Grow Cut Effect (scripted, bundled in Fast Grow Cut Effect extension)
FinslerTractography
- Finsler Backtracing (cli, bundled in Finsler Tractography extension)
- Finsler Tractography (cli, bundled in Finsler Tractography extension)
GelDosimetryAnalysis
- Gel Dosimetry Analysis Algo (loadable, bundled in Gel Dosimetry Analysis extension)
GyroGuide
- Gyro Guide (scripted, bundled in Gyro Guide extension)
IASEM
- Binary Watershed Effect (scripted, bundled in IASEM extension)
- Bin Shrink (cli, bundled in IASEM extension)
- Double Threshold Effect (scripted, bundled in IASEM extension)
- IASEMImport (cli, bundled in IASEM extension)
- IASEMImport Series (cli, bundled in IASEM extension)
- Label Object Statistics (scripted, bundled in IASEM extension)
- Spacing Aware Curvature Diffusion (cli, bundled in IASEM extension)
iGyne
ImageMaker
- Image Maker (cli, bundled in Image Maker extension)
IntensitySegmenter
- Intensity Segmenter (cli, bundled in Intensity Segmenter extension)
LAScarSegmenter
- LAScar Segmenter (cli, bundled in LAScar Segmenter extension)
LongitudinalPETCT
- Longitudinal PETCT (loadable, bundled in Longitudinal PETCT extension)
- PETSUVImage Maker (cli, bundled in Longitudinal PETCT extension)
MABMIS
- IGR3D MABMIS Testing (cli, bundled in MABMIS extension)
- IGR3D MABMIS Training (cli, bundled in MABMIS extension)
MatlabBridge
- Matlab Commander (cli, bundled in Matlab Bridge extension)
- Matlab Module Generator (loadable, bundled in Matlab Bridge extension)
MultidimData
- Metafile Importer (loadable, bundled in Multidim Data extension)
- Sequence Browser (loadable, bundled in Multidim Data extension)
- Sequences (loadable, bundled in Multidim Data extension)
NeedleFinder
- Needle Finder (scripted, bundled in Needle Finder extension)
PBNRR
PercutaneousApproachAnalysis
- Percutaneous Approach Analysis (scripted, bundled in Percutaneous Approach Analysis extension)
PerkTutor
- Perk Evaluator (loadable, bundled in Perk Tutor extension)
- Python Metrics Calculator (scripted, bundled in Perk Tutor extension)
- Transform Recorder (loadable, bundled in Perk Tutor extension)
- Workflow Segmentation (loadable, bundled in Perk Tutor extension)
PETDICOMExtension
- SUVFactor Calculator (cli, bundled in PETDICOMExtension extension)
PkModeling
- Pk Modeling (cli, bundled in Pk Modeling extension)
PortPlacement
- Port Placement (scripted, bundled in Port Placement extension)
PyDevRemoteDebug
- Py Dev Remote Debug (scripted, bundled in Py Dev Remote Debug extension)
Reporting
- Label To DICOMSEGConverter (scripted, bundled in Reporting extension)
- Reporting (loadable, bundled in Reporting extension)
Scoliosis
- Scoliosis Monitoring (scripted, bundled in Scoliosis extension)
- Spinal Curvature Measurement (scripted, bundled in Scoliosis extension)
SegmentationAidedRegistration
- Segmentation Aided Registration (cli, bundled in Segmentation Aided Registration extension)
SlicerToKiwiExporter
- Slicer To Kiwi Exporter (scripted, bundled in Slicer To Kiwi Exporter extension)
SobolevSegmenter
- Sobolev Segmenter (cli, bundled in Sobolev Segmenter extension)
SwissSkullStripper
- Swiss Skull Stripper (cli, bundled in Swiss Skull Stripper extension)
TCIABrowser
- TCIABrowser (scripted, bundled in TCIABrowser extension)
ThingiverseBrowser
- Thingiverse Browser (scripted, bundled in Thingiverse Browser extension)
TrackerStabilizer
- Tracker Stabilizer (loadable, bundled in Tracker Stabilizer extension)
VolumeClip
- Volume Clip With Model (scripted, bundled in Volume Clip extension)
- Volume Clip With Roi (scripted, bundled in Volume Clip extension)
WindowLevelEffect
- Window Level Effect (scripted, bundled in Window Level Effect extension)
XNATSlicer
- Xnat Slicer (scripted, bundled in XNATSlicer extension)
Modules by extension
46 extensions:
- ABC
- Airway Segmentation
- builtin
- Carrera Slice
- CBC 3D I2MConversion
- Change Tracker
- Cleaver Extension
- CMFreg
- Corner Annotation
- Curve Maker
- Dice Computation
- Erode Dilate Label
- Fast Grow Cut Effect
- Finsler Tractography
- Gel Dosimetry Analysis
- Gyro Guide
- IASEM
- i Gyne
- Image Maker
- Intensity Segmenter
- LAScar Segmenter
- Longitudinal PETCT
- MABMIS
- Matlab Bridge
- Multidim Data
- Needle Finder
- PBNRR
- Percutaneous Approach Analysis
- Perk Tutor
- PETDICOMExtension
- Pk Modeling
- Port Placement
- Py Dev Remote Debug
- Reporting
- Scoliosis
- Segmentation Aided Registration
- Slicer To Kiwi Exporter
- Sobolev Segmenter
- Swiss Skull Stripper
- TCIABrowser
- Thingiverse Browser
- Tracker Stabilizer
- Volume Clip
- Window Level Effect
- XNATSlicer
Working extensions by name
45 working extensions:
- ABC
- Airway Segmentation
- Carrera Slice
- CBC 3D I2MConversion
- Change Tracker
- Cleaver Extension
- CMFreg
- Corner Annotation
- Curve Maker
- Dice Computation
- Erode Dilate Label
- Fast Grow Cut Effect
- Finsler Tractography
- Gel Dosimetry Analysis
- Gyro Guide
- IASEM
- i Gyne
- Image Maker
- Intensity Segmenter
- LAScar Segmenter
- Longitudinal PETCT
- MABMIS
- Matlab Bridge
- Multidim Data
- Needle Finder
- PBNRR
- Percutaneous Approach Analysis
- Perk Tutor
- PETDICOMExtension
- Pk Modeling
- Port Placement
- Py Dev Remote Debug
- Reporting
- Resection Planner
- Scoliosis
- Segmentation Aided Registration
- Slicer To Kiwi Exporter
- Sobolev Segmenter
- Swiss Skull Stripper
- TCIABrowser
- Thingiverse Browser
- Tracker Stabilizer
- Volume Clip
- Window Level Effect
- XNATSlicer
Working extensions by category
26 categories:
- Cardiac
- Cardiac MRI toolkit
- Converters
- Developer Tools
- Diffusion
- Editor Effects
- Exporter
- Filtering
- IGT
- Informatics
- Mesh Generation
- Microscopy
- Multidimensional data
- Quantification
- Radiotherapy
- Registration
- Remote
- Scoliosis
- Segmentation
- Shape Analysis
- Surface Models
- Tractography
- Training
- Utilities
- Vascular Modeling Toolkit
- Wizards
Cardiac
Cardiac MRI toolkit
Converters
Developer Tools
Diffusion
Editor Effects
Exporter
Filtering
Morphology
IGT
- Port Placement
- Gyro Guide
- Corner Annotation
- i Gyne
- Percutaneous Approach Analysis
- Needle Finder
- Tracker Stabilizer
- Resection Planner
Informatics
Mesh Generation
Microscopy
Multidimensional data
Quantification
Radiotherapy
Registration
Remote
Scoliosis
Segmentation
- Swiss Skull Stripper
- Carrera Slice
- Airway Segmentation
- LAScar Segmenter
- ABC
- MABMIS
- Sobolev Segmenter
- Fast Grow Cut Effect
- Intensity Segmenter
- Volume Clip
Shape Analysis
Surface Models
Tractography
Training
Utilities
Vascular Modeling Toolkit
Wizards
Working extensions by contributing organization
54 contributing organizations:
- Asclepios INRIA) and Nikos Chrisochoides (CRTC
- Brigham and Women's Hospital
- BWH
- BWH & MGH
- BWH, SPL
- BWH/UAB
- College of Information Engineering, Zhejiang University of Technology, Hangzhou, China
- Crisalix
- CRTC
- Department of Neurosurgery, PLA General Hospital, Beijing, China
- Department of Orthodontics, UNC
- GE
- GE GLobal Research
- GT
- Isomics
- Kitware
- Moka Creative LLC, Washington University in St. Louis
- NIRAL, UNC
- Noware
- Perk Lab at Queen's University
- Perk Lab, Queen's
- Perk Lab, Queen's University
- PMH
- Queen's University
- Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
- SBU
- SCI Institute
- Shiga University of Medical Science, Japan
- Shiga University of Medical Science, Japan, SPL
- SPL
- SPL and BWH
- SPL B&W Harvard
- SRI
- Stony Brook University
- Surgical Planning Lab
- UAB
- UNC
- Univ of Michigan
- University College Cork
- University of Bern
- University of Heidelberg
- University of Iowa
- University of Utah
- Utah
- UWA
- Washington University in St. Louis
Asclepios INRIA) and Nikos Chrisochoides (CRTC
Brigham and Women's Hospital
BWH
- Change Tracker
- Curve Maker
- Dice Computation
- Fast Grow Cut Effect
- Pk Modeling
- Segmentation Aided Registration
- Tracker Stabilizer
BWH & MGH
BWH, SPL
BWH/UAB
College of Information Engineering, Zhejiang University of Technology, Hangzhou, China
Crisalix
CRTC
Department of Neurosurgery, PLA General Hospital, Beijing, China
Department of Orthodontics, UNC
GE
GE GLobal Research
GT
Isomics
Kitware
Moka Creative LLC, Washington University in St. Louis
NIRAL, UNC
Noware
PerkLab at Queen's University
PerkLab, Queen's
PerkLab, Queen's University
PMH
Queen's University
Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
SBU
SCI Institute
Shiga University of Medical Science, Japan
Shiga University of Medical Science, Japan, SPL
SPL
SPL and BWH
SPL B&W Harvard
SRI
Stony Brook University
Surgical Planning Lab
UAB
- Carrera Slice
- Fast Grow Cut Effect
- LAScar Segmenter
- Segmentation Aided Registration
- Sobolev Segmenter
UNC
Univ of Michigan
University College Cork
University of Bern
University of Heidelberg
University of Iowa
University of Utah
Utah
UWA
Washington University in St. Louis
Working extensions by contributing individual
125 contributing individuals:
- Akila Viswanathan
- Alan Morris
- Alex Yarmarkovich
- Alireza Mehrtash
- Allen Tannenbaum
- Andinet Enquobahrie
- Andras Lasso
- Andre Mastmeyer
- Andrey Fedorov
- Andriy Fedorov
- Andriy Kot
- Antonio Damato
- Antonio Tristan-Vega
- Arie Nakhmani
- Arnaud Gelas
- Atsushi Yamada
- Beatriz Paniagua
- Bill Lorensen
- Bradley Lowekamp
- Brig Bagley
- Carl-Fredrik Westin
- Csaba Pinter
- Dan Marcus
- Danny Perry
- Demian Wasssermann
- Dinggang Shen
- Ethan Ulrich
- Fotis Drakopoulos
- Francois Budin
- Franklin King
- Greg Gardner
- Guillaume Pernelle
- Ivan Kolesov
- Jan Egger
- Jayender Jagadeesan
- Jean-Christophe Fillion-Robin
- Jennifer Andrea
- Jiashu Zhang
- Jim Miller
- Jonathan Bronson
- Josh Cates
- Julien Finet
- Junichi Tokuda
- Karl Fritscher
- Kevin Wang
- Kilian Pohl
- Koichiro Murakami
- Lauren Barber
- Laurent Chauvin
- Liang-Jia Zhu
- Liangjia Zhu
- Luis G. Torres
- Luping Fang
- Mahnaz Maddah
- Manson Winsauer
- Marcel Prastawa
- Matt Lougheed
- Mattea Welch
- Matthew Holden
- Matthew S. Holden
- Mauricio Reyes
- Ming-ching Chang
- Minjeong Kim
- Nabgha Fahrat
- Nicole Aucoin
- Nigel Goh
- Nikos Chrisochoides
- Olivier Clatz
- Pat Marion
- Patricio Vela
- Paul Mercea
- Pengdong Xiao
- Peter Black
- Peter Karasev
- Peter Savadjiev
- Pietro Nardelli
- Qing Pan
- Rick Herrick
- Rob Mac Leod
- Ron Kikinis
- Ruifeng Chen
- S
- Sam Song
- Stefan Bauer
- Steve Pieper
- Sunil Kumar
- Sylvain Bouix
- Tamas Ungi
- Thomas Fejes
- Tina Kapur
- Tobias Penzkofer
- Vinicius Boen
- Xiaofeng Liu
- Xiaojun Chen
- Xiaolei Chen
- y Wells
- Yi Gao
- Yingxuan Zhu
- Yixun Liu
Akila Viswanathan
Alan Morris
Alex Yarmarkovich
Alireza Mehrtash
Allen Tannenbaum
- Carrera Slice
- Fast Grow Cut Effect
- LAScar Segmenter
- Segmentation Aided Registration
- Sobolev Segmenter
Andinet Enquobahrie
Andras Lasso
Andre Mastmeyer
Andrey Fedorov
- CBC 3D I2MConversion
- Change Tracker
- Longitudinal PETCT
- PBNRR
- PETDICOMExtension
- Reporting
- TCIABrowser
- Window Level Effect
Andriy Fedorov
Andriy Kot
Antonio Damato
Antonio Tristan-Vega
Arie Nakhmani
Arnaud Gelas
Atsushi Yamada
Beatriz Paniagua
Bill Lorensen
Bradley Lowekamp
Brig Bagley
Carl-Fredrik Westin
Csaba Pinter
Dan Marcus
Danny Perry
Demian Wasssermann
Dinggang Shen
Ethan Ulrich
Fotis Drakopoulos
Francois Budin
Franklin King
Greg Gardner
Guillaume Pernelle
Ivan Kolesov
Jan Egger
Jayender Jagadeesan
Jean-Christophe Fillion-Robin
Jennifer Andrea
Jiashu Zhang
Jim Miller
Jonathan Bronson
Josh Cates
Julien Finet
Junichi Tokuda
Karl Fritscher
Kevin Wang
Kilian Pohl
Koichiro Murakami
Lauren Barber
Laurent Chauvin
Liang-Jia Zhu
Liangjia Zhu
Luis G. Torres
Luping Fang
Mahnaz Maddah
Manson Winsauer
Marcel Prastawa
Matt Lougheed
Mattea Welch
Matthew Holden
Matthew S. Holden
Mauricio Reyes
Ming-ching Chang
Minjeong Kim
Nabgha Fahrat
Nicole Aucoin
Nigel Goh
Nikos Chrisochoides
Olivier Clatz
Pat Marion
Patricio Vela
Paul Mercea
Pengdong Xiao
Peter Black
Peter Karasev
Peter Savadjiev
Pietro Nardelli
Qing Pan
Rick Herrick
Rob MacLeod
Ron Kikinis
Ruifeng Chen
S
Sam Song
Stefan Bauer
Steve Pieper
Sunil Kumar
Sylvain Bouix
Tamas Ungi
Thomas Fejes
Tina Kapur
Tobias Penzkofer
Vinicius Boen
Xiaofeng Liu
Xiaojun Chen
Xiaolei Chen
y Wells
Yi Gao
- Carrera Slice
- Fast Grow Cut Effect
- i Gyne
- LAScar Segmenter
- Needle Finder
- Segmentation Aided Registration
Yingxuan Zhu
Yixun Liu
Broken extensions by name
22 broken extensions:
- Cardiac MRI Toolkit
- Cardiac Agaston Measures
- DTIAtlas Builder
- DTIAtlas Fiber Analyzer
- DTIPrep
- DTIProcess
- Faceted Visualizer
- Fiber Viewer Light
- hough Transform CLI
- LASegmenter
- Light Weight Robot IGT
- Model Clip
- Model To Model Distance
- Open CAD
- RSSExtension
- Shape Population Viewer
- Skull Stripper
- VMTK
- Slicer IGT
- Slicer RT
- SPHARM-PDM
- UKFTractography
Broken extensions by category
26 categories:
- Cardiac
- Cardiac MRI toolkit
- Converters
- Developer Tools
- Diffusion
- Editor Effects
- Exporter
- Filtering
- IGT
- Informatics
- Mesh Generation
- Microscopy
- Multidimensional data
- Quantification
- Radiotherapy
- Registration
- Remote
- Scoliosis
- Segmentation
- Shape Analysis
- Surface Models
- Tractography
- Training
- Utilities
- Vascular Modeling Toolkit
- Wizards
Cardiac
Cardiac MRI toolkit
Converters
Developer Tools
Diffusion
Editor Effects
Exporter
Filtering
Morphology
IGT
Informatics
Mesh Generation
Microscopy
Multidimensional data
Quantification
Radiotherapy
Registration
Remote
Scoliosis
Segmentation
Shape Analysis
Surface Models
Tractography
Training
Utilities
Vascular Modeling Toolkit
Wizards
Broken extensions by contributing organization
54 contributing organizations:
- Boston Childrens Hospital
- Brigham and Women's Hospital
- BWH
- CARMA
- GE
- Isomics
- Kitware
- LUH
- Massachusetts General Hospital
- NIRAL, UNC
- Orobix
- Perk Lab, Queen's University
- Queen's University
- Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
- SBU
- UAB
- UIowa
- UNC
- Utah
- yogesh@bwh.harvard.edu
Boston Childrens Hospital
Brigham and Women's Hospital
BWH
CARMA
GE
Isomics
Kitware
LUH
Massachusetts General Hospital
NIRAL, UNC
Orobix
PerkLab, Queen's University
Queen's University
Radiation Medicine Program, Princess Margaret Hospital, University Health Network Toronto
SBU
UAB
UIowa
UNC
- DTIAtlas Builder
- DTIAtlas Fiber Analyzer
- DTIPrep
- DTIProcess
- Fiber Viewer Light
- Model To Model Distance
- SPHARM-PDM
Utah
yogesh@bwh.harvard.edu
Broken extensions by contributing individual
125 contributing individuals:
- Adrien Kaiser
- Alan Morris
- Alexis Girault
- Allen Tannenbaum
- Andras Lasso
- Beatriz Paniagua
- Carl-Fredrik Westin
- Christian Baumgartner
- Csaba Pinter
- Daniel Haehn
- Danny Perry
- Eugene Kholmovski
- Francois Budin
- Greg Gardner
- Greg Sharp
- Guillaume Pernelle
- Hans Johnson
- Harini Veeraraghavan
- Ipek Oguz
- Jayender Jagadeesan
- Jean-Christophe Fillion-Robin
- Jessica Forbes
- Josh Cates
- Juliette Pera
- Jun LIN
- Junichi Tokuda
- Kent Williams
- Kevin Wang
- Liangjia Zhu
- Luca Antiga
- Martha Shenton
- Martin Styner
- Peter Savadjiev
- Rob Mac Leod
- Ron Kikinis
- Ryan Eckbo
- Salma Bengali
- Sebastian Tauscher
- Stefan Lienhard
- Steve Pieper
- Sylvain Bouix
- Tamas Ungi
- Vivek Narayan
- Xiaodong Tao
- Xiaojun CHEN
- Yi Gao
- Yinpeng Li
- Yogesh Rathi
- Yundi Shi
