Difference between revisions of "Training-3.4"
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= Welcome to the 3D Slicer3.4 User Training 101= | = Welcome to the 3D Slicer3.4 User Training 101= | ||
− | The information on this page applies to '''3D Slicer version 3'''. | + | The information on this page applies to '''3D Slicer version 3.4'''. Please visit the following links for training materials on [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training Slicer3.2] or [http://wiki.na-mic.org/Wiki/index.php/Slicer:Workshops:User_Training_101 Slicer2]. |
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|- style="background:#b3b3e7; color:black" align="left" | |- style="background:#b3b3e7; color:black" align="left" | ||
| style="width:5%" | '''Category''' | | style="width:5%" | '''Category''' | ||
− | | style="width: | + | | style="width:40%" | '''Tutorial''' |
− | | style="width: | + | | style="width:40%" | '''Sample Data''' |
− | | style="width: | + | | style="width:15%" | '''Image''' |
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| style="background:#e5e5ff; color:black" align="Center"| '''1.1''' | | style="background:#e5e5ff; color:black" align="Center"| '''1.1''' | ||
| style="background:#e5e5ff; color:black"| [[Media:3DVisualization_SoniaPujol_Munich2008_2.ppt| Data Loading and 3D Visualization in Slicer3 ]] | | style="background:#e5e5ff; color:black"| [[Media:3DVisualization_SoniaPujol_Munich2008_2.ppt| Data Loading and 3D Visualization in Slicer3 ]] | ||
− | | style="background:#e5e5ff; color:black"| [http://www.na-mic.org/Wiki/index.php/Image:SlicerSampleVisualization.tar.gz | + | | style="background:#e5e5ff; color:black"| [http://www.na-mic.org/Wiki/index.php/Image:SlicerSampleVisualization.tar.gz Slicer3 Visualization Sample Data] (.tar.gz) <br> [http://www.na-mic.org/Wiki/index.php/media:SlicerSampleVisualization.zip Slicer3 Visualization Sample Data] (.zip) |
| style="background:#e5e5ff; color:black" align="Center"| [[Image:SceneRestore.png|200px|LoadingandVisualization]] | | style="background:#e5e5ff; color:black" align="Center"| [[Image:SceneRestore.png|200px|LoadingandVisualization]] | ||
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| style="background:#e5e5ff; color:black" align="Center"| [[Image:OrbitSegmentationt.png|200px]] | | style="background:#e5e5ff; color:black" align="Center"| [[Image:OrbitSegmentationt.png|200px]] | ||
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| style="background:#b3b3e7; color:black" align="Center"| '''2.2''' | | style="background:#b3b3e7; color:black" align="Center"| '''2.2''' | ||
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This tutorial takes the trainee through a complete workup for neurosurgical patient specific mapping.See pages 58 to 80 of this tutorial on using the '''"Simple region growing"''' segmentation module. | This tutorial takes the trainee through a complete workup for neurosurgical patient specific mapping.See pages 58 to 80 of this tutorial on using the '''"Simple region growing"''' segmentation module. | ||
<br>Background Materials: [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Neurosurgical-Planning Neurosurgical Planning]. | <br>Background Materials: [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Neurosurgical-Planning Neurosurgical Planning]. | ||
− | | style="background:#e5e5ff; color:black"|[[Media:NeurosurgicalPlanningTutorialData.zip| | + | | style="background:#e5e5ff; color:black"|[[Media:NeurosurgicalPlanningTutorialData.zip|Neurosurgical Planning TutorialData]] (.zip) |
| style="background:#e5e5ff; color:black" align="Center"| [[Image:NeurosurgicalPlanningOverview.png|200px|Neurosurgical Planning Overview]] | | style="background:#e5e5ff; color:black" align="Center"| [[Image:NeurosurgicalPlanningOverview.png|200px|Neurosurgical Planning Overview]] | ||
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** [http://issues.nbirn.net/browse/GWE issue tracking system] | ** [http://issues.nbirn.net/browse/GWE issue tracking system] | ||
** [http://www.gridwizardenterprise.org/mail-lists.html mailing lists] | ** [http://www.gridwizardenterprise.org/mail-lists.html mailing lists] | ||
− | | style="background:#e5e5ff; color:black" align="Center"| [[Image:GWE-overview.jpg|200px|GWE Overview]]<br>[http://www.youtube.com/watch?v=yXdRks5Wu5Q Featured Study Case (YouTube) | + | | style="background:#e5e5ff; color:black" align="Center"| [[Image:GWE-overview.jpg|200px|GWE Overview]]<br>[http://www.youtube.com/watch?v=yXdRks5Wu5Q Featured Study Case] (YouTube) |
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* <span style="background-color: #9595d5"> Category 3</span> = Specialized application packages | * <span style="background-color: #9595d5"> Category 3</span> = Specialized application packages | ||
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=Additional Materials= | =Additional Materials= | ||
For a variety of data sets for downloading, check the following [http://www.na-mic.org/publications/pages/display/?collection=13 '''link''']. | For a variety of data sets for downloading, check the following [http://www.na-mic.org/publications/pages/display/?collection=13 '''link''']. |
Revision as of 18:06, 31 March 2009
Home < Training-3.4Welcome to the 3D Slicer3.4 User Training 101
The information on this page applies to 3D Slicer version 3.4. Please visit the following links for training materials on Slicer3.2 or Slicer2.
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Slicer Logo | |
Software Installation
The Slicer download page contains links for downloading the different versions of Slicer 3.
Training Compendium
Category | Tutorial | Sample Data | Image |
1.1 | Data Loading and 3D Visualization in Slicer3 | Slicer3 Visualization Sample Data (.tar.gz) Slicer3 Visualization Sample Data (.zip) |
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1.2 | Manual segmentation with 3D Slicer | ||
2.2 | Image Guided Therapy Planning Tutorial This tutorial takes the trainee through a complete workup for neurosurgical patient specific mapping.See pages 58 to 80 of this tutorial on using the "Simple region growing" segmentation module.
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Neurosurgical Planning TutorialData (.zip) | |
3.1 | Slicer3 as a research tool for image guided therapy research (IGT)
This tutorial is intended for engineers and scientists who want to use Slicer 3 for IGT research. |
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3.2 | SPL-PNL Brain Atlas Tutorial
This three-dimensional brain atlas dataset, derived from a volumetric, whole-head MRI scan, contains the original MRI-scan, a complete set of label maps, three-dimensional reconstructions (200+ structures) and a tutorial. |
SPL-PNL Brain Atlas | |
3.3 | SPL Abdominal Atlas Tutorial
This three-dimensional abdominal atlas was derived from a computed tomography (CT) scan, using semi-automated image segmentation and three-dimensional reconstruction techniques. The dataset contains the original CT scan, detailed label maps, three-dimensional reconstructions and a tutorial.
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SPL Abdominal Atlas | |
3.4 | Using XNAT Desktop and Slicer3 for remote data handling
This tutorial is intended for researchers who wish to upload local datasets to a remote XNAT repository like XNAT Central and retrieve catalog files that can be opened inside Slicer. |
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3.5 | Harnessing Grid Computational Resources and integration with Slicer through the Grid Wizard Enterprise system
These tutorials are intended for researchers who wish to utilize distributed computational resources. |
Grid Wizard Enterprise | Featured Study Case (YouTube) |
- Category 1 = Basic functionality
- Category 2 = Advanced functionality
- Category 3 = Specialized application packages
Additional Materials
For a variety of data sets for downloading, check the following link.