Stanford Simbios group

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To develop a generic semi-automatic segmentation toolkit to convert images of musculoskeletal structures to 3D models.

Process Flowchart

Process Diagram.


Atlas Generation from Input MR Images

Model Generation from Input MR Images

Pre-Segmented models for femur, patella and tibia are obtained for a patient (in .stl format). This models can be prepared using the hypermesh software. The models contain vertices of triangles representing femur, tibia and patella regions.

Pre-Segmented Femur/Patella/Tibia Model

Create a filled label map using PolyDataToFilledLabelMap module in slicer

EM Segmentation based on the atlas

Register Images

Register Images Module in Slicer