Stanford Simbios group

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To develop a generic semi-automatic segmentation toolkit to convert images of musculoskeletal structures to 3D models.

Process Flowchart

Process Diagram.


Atlas Generation from Input MR Images

Model Generation from Input MR Images

Create a filled label map using PolyDataToFilledLabelMap module in slicer

EM Segmentation based on the atlas

Register Images

Register Images Module in Slicer