Difference between revisions of "Stanford Simbios group"

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==Atlas Generation from Input MR Images==
 
==Atlas Generation from Input MR Images==
 
===Model Generation from Input MR Images===
 
===Model Generation from Input MR Images===
Pre-Segmented models for femur, patella and tibia are obtained for a patient (in .stl format). This models can be prepared using the hypermesh software. The models contain vertices of triangles representing femur, tibia and patella regions.
+
Pre-Segmented models for femur, patella and tibia are obtained for a patient (in .stl format). This models can be prepared using the hypermesh software. The models contain vertices of triangles representing femur, tibia and patella regions.  
 +
[[Image:All_Three.JPG|left|thumb| Pre-Segmented Femur/Patella/Tibia Model]]
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===Create a filled label map using PolyDataToFilledLabelMap module in slicer===
 
===Create a filled label map using PolyDataToFilledLabelMap module in slicer===
 
===EM Segmentation based on the atlas===
 
===EM Segmentation based on the atlas===

Revision as of 18:03, 28 April 2009

Home < Stanford Simbios group


Aim

To develop a generic semi-automatic segmentation toolkit to convert images of musculoskeletal structures to 3D models.

Process Flowchart

Process Diagram.

Progress

Atlas Generation from Input MR Images

Model Generation from Input MR Images

Pre-Segmented models for femur, patella and tibia are obtained for a patient (in .stl format). This models can be prepared using the hypermesh software. The models contain vertices of triangles representing femur, tibia and patella regions.

Pre-Segmented Femur/Patella/Tibia Model

Create a filled label map using PolyDataToFilledLabelMap module in slicer

EM Segmentation based on the atlas

Register Images

Register Images Module in Slicer

Datasets