Slicer 3.6:Training

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Slicer 3.6 Tutorials

  • The following table contains "How to" tutorials with matched sample data sets. They demonstrate how to use the 3D Slicer environment (version 3.6 release) to accomplish certain tasks.
  • For tutorials for other versions of Slicer, please visit the Slicer training portal.
  • For questions related to the Slicer3 Compendium, please send an e-mail to Sonia Pujol, Ph.D


Category Tutorial Sample Data Image
Core Slicer3Minute Tutorial

The Slicer3Minute tutorial is an introduction to the advanced 3D visualization capabilities of Slicer3.6.

Audience: First time users.
Slicer3Minute Data

The Slicer3Minute dataset contains an MR scan of the brain and 3D reconstructions of the anatomy
Slicer3Minute 3.6RC2.png
Core Slicer3Visualization Tutorial

The Slicer3Visualization tutorial guides through 3D data loading and visualization in Slicer3.6.

Audience: All beginners including clinicians, scientists, engineers and programmers.
Slicer3Visualization Data

The Slicer3VisualizationDataset contains two MR scans of the brain, a pre-computed labelmap and 3D reconstructions of the anatomy.
VisualizationTutorial 3.6RC3.png
Core Programming in Slicer3 Tutorial

The Programming in Slicer3 tutorial is an introduction to the the integration of stand-alone programs outside of the Slicer3 source tree.

Audience: Programmers and Engineers.
HelloWorld Plugin

The HelloWorld tutorial dataset contains an MR scan of the brain and pre-computed xml and C++ files for integrating the Hello World plug-in to Slicer3.
Programming
Core Interactive Editor-PDF
Interactive Editor-PPT

Shows how to use the interactive editing tools in Slicer.
Audience: All users and developers.
Editor Data

This dataset contains a MR dataset of the brain.
InteractiveEditor.png
Core Manual Registration-PDF

Shows how to manually/interactively align two images in Slicer3.6

Audience: First time & early users.
Manual Registration Data

This dataset contains two brain MRI of a single subject, obtained in different orientations.
Slicer3 ManualRegistrationTutorial.gif
Specialized Diffusion MRI tutorial-PDF
Diffusion MRI tutorial-PPT

This tutorial guides you through the process of loading diffusion MR data, estimating diffusion tensors, and performing tractography of white matter bundles.

Audience: All users and developers.
Diffusion Data Cc.PNG
Specialized Change Tracker Tutorial

This tutorial describes the use of ChangeTracker module to detect changes in tumor volume from two MRI scans.

Audience: All users interested in longitudinal analysis of pathology.
Training Data download is integrated with the ChangeTracker module (see Tutorial) Slicer3.4.1-ChangeTracker.jpg

Summer 2010 Tutorial Contest Entries (under construction)

Category Tutorial Sample Data Image
Specialized Meshing Workflow tutorial

Audience: All users and developers.
Meshing Workflow Data

FEMesh.png
Specialized Fiducials tutorial

Audience: All users and developers.
Fiducials Data

Fiducials.png
Specialized Robust Statistic Segmenter

Audience: All users and developers.
Robust Statistic Segmenter Data

RSS.png
Specialized Longitudinal lesion comparison

Audience: All users and developers.
Longitudinal Lesion Comparison Data Longitudinal Lesion.png
Specialized Robot-Assisted MRI-Guided Prostate Biopsy

Audience: All users and developers.
Robot-Assisted MRI-Guided Prostate Biopsy ProstateNav.png
Specialized Atlas Label Fusion & Surface Registration

Audience: All users and developers.
Atlas Label Fusion & Surface Registration AtlasLabelFusion.png

Software Installation

  • The Slicer download page contains information on how to obtain a compiled version of Slicer for a variety of platforms and where to find the source code for Slicer 3.

Software Documentation

  • For the Slicer 3.6 manual pages please click here. These pages are the reference manual for Slicer 3.6 and briefly explain the functionality found in panels and modules.