Slicer4:VisualBlog
This is the Slicer 4 visual blog. Please click here if you are looking for the old Slicer 3 visual blog.
- 2014
Multiplanar and volume rendered view of a CT scan of a Granny Smith apple. In plane resolution is 0.33 mm, and 1.25 mm slice thickness.
Render created in Blender of data segmented and exported from Slicer. Taimur Alavi created this from a CT scan of a friend who had broken his neck.
3D Print of the same broken neck model, given to the friend as a kind of "good luck charm". The friend recovered.
- 2013
The Multidimensional data extension allows creating, editing, and visualizing multidimensional data sets in 3D Slicer. Browsing, replaying 4D volumes, reviewing deforming 3D models, replaying tracked ultrasound, tool navigation data in 3D, applying time-varying transforms are now all possible.
UKFTractography is a module for computing tractography of DWI images using an unscented Kalman filter. Because of its 2-tensor algorithm, it is able to model fiber crossings and capture many more fibers than a single tensor algorithm.
Some applications of the SlicerIGT extension for image-guided and navigated medical interventions. For more information see the Slicer IGT website.
ShapePopulationViewer is an external tool that allows the user to dynamically interact with multiple surfaces at the same time : an interesting tool for shape visualisation and comparison. It now is available as a Slicer Extension.
The Subject hierarchy module and mechanism organizes and handles loaded data in the RT extension package, providing processing and analysis features through plugins. It aspires to be a convenient central organizing point for many of the operations that 3D Slicer and its extensions perform.
The Data Store allows a user to easily upload and download MRB files.
The Contours module manages contours in the RT extension package.
MultiVolumeExplorer module has been updated to include the capability to plot multivolume pixel values from 2 multivolumes at the same time. This feature is particularly helpful while visualizing the results of model fits, such as those produced by the updated PkModeling extension.
A new extension allows to run matlab scripts without having to recompile Slicer. For more information see here
Extension Manager, the slicer multiplatform Appstore is open for business and free.
Semi-automatic lobe segmentation for regional lung disease analysis as part of the Chest Imaging Platform funded by NHLBI 1R01HL116931
The Cardiac MR Extension provides tools for segmentation and analysis of heart tissue and structure for treatment and diagnosis of Atrial Fibrillation.
CarreraSlice is an interactive segmentation tool. It combines a fast implementation of the GrowCut algorithm for the 'initialization' phase with KSlice, an interactive algorithm based on Level Sets, for the 'refinement' stage.
- 2012
A box plot
Fetal brain development. The visualization is using volume rendering and the Multivolume modules in Slicer 4. Click here for the full movie (~24mb). Data downloaded from Imperial College.
Leveraging multi viewer layout to arrange 6 slices in the 3D viewer
Visualization of complex query "motor system + mass + straight gyrus" using the faceted query module
Fibers colored by their mean orientation is now available in the Tractography Display module
SlicerRT 0.2 has been released! SlicerRT is 3D Slicer with extensions for radiotherapy research, which is developed by SparKit project with the contributions from Slicer community.
The new extension manager
Up to date download statistics
A combination of ROI cropping of streamlines, fiducial based seeding and labelmap seeding allows to assess the deformation of streamlines which are due to tumor based deformations.
New download page which highlights the operating system of the downloading system.
New look for the Welcome module and the "Load/Save" toolbar
Step one of the DWI to Full-brain tractography wizard
Improved 2-stage user interface for the Slice Viewer Controllers
Updated Dicom Module
Updated Icons for the Core Modules
Updated CompareViewers and Viewer Controler Module
MultiVolumeExplorer with support for charting. See here for more information.
Label Statistics with charting and visualization
Image Quantification with Label Statistics, Charting, and Volume Rendering
Frame from a movie of slicer code activity in 2011. See the full movie here. Made with gource. Inspired by a an ITKv4 gource movie
A ChartView using QWebView and jqPlot with plots defined in MRML
A ChartView using QWebView and jqPlot with plots defined in MRML
A bar chart tie MRML to a QWebView
- 2011
Compareviewers
ChangeTracker visualization of analysis results
Sceneview Module
Dicom widget
Endoscopy module
Volumerendering of a CT angiogram
Volumerendering of a subvolume of a post Gadolinium T1 weighted image of a GBM. Note the relation of surrounding vessels to the tumor.
Note the deformation of the corpus callosum fibers
Using an ROI to crop streamlines from a whole brain tractography. The streamlines display color by orientation, the ellipsoids are displaying fractional anisotropy.
Annotation module 2011-11
Main Gui with pop-up slice controllers
The Data Probe
Models organized in a hierarchy
New Look Oct 2011
Dual camera, dual 3D viewer
After the facelift for the GUI
New models module appearance
Slicer4 with Volume Rendering
Slicer4 Annotation Module
Glyph display on cross-sections
First CompareView in Slicer4 2011
Slicer 4 Annotation Module 2011-01-24
Slicer 4 Annotation Module 2011-01-24
Slicer 4 Live ultrasound module for IGT spine procedures
Slicer 4 Live ultrasound module for IGT prostate procedures
- 2010
Slicer 4 Annotation Module
Slicer with Qt only
ROI Module
