Difference between revisions of "Slicer4:Download Data"

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=Introduction=
 
=Introduction=
 
*This is a first generation mock-up for a database display/download schema for Slicer
 
*This is a first generation mock-up for a database display/download schema for Slicer
 +
*The NA-MIC download data can be used for prototyping.
 
*thumbnails should be extracted for now from the center slice of the volume. Mechanism to replace manually. Down the road, we will use the thumbnail from the mrml file.
 
*thumbnails should be extracted for now from the center slice of the volume. Mechanism to replace manually. Down the road, we will use the thumbnail from the mrml file.
 
*Annotation should be extracted from the DICOM headers, if available. We will need a painless way to edit the annotation (with wiki style history). Once the slicer annotation module is working (summer 2011), we can extract information from there.
 
*Annotation should be extracted from the DICOM headers, if available. We will need a painless way to edit the annotation (with wiki style history). Once the slicer annotation module is working (summer 2011), we can extract information from there.
 
*Pack as many thumbnails as possible horizontally (based on width of browser window and font size)
 
*Pack as many thumbnails as possible horizontally (based on width of browser window and font size)
 
*Only list one or two lines of text, the rest pops up on rollover.
 
*Only list one or two lines of text, the rest pops up on rollover.
 +
*Pack densly, use space sparingly
  
 
=Top Level=
 
=Top Level=

Revision as of 13:50, 13 October 2010

Home < Slicer4:Download Data

Introduction

  • This is a first generation mock-up for a database display/download schema for Slicer
  • The NA-MIC download data can be used for prototyping.
  • thumbnails should be extracted for now from the center slice of the volume. Mechanism to replace manually. Down the road, we will use the thumbnail from the mrml file.
  • Annotation should be extracted from the DICOM headers, if available. We will need a painless way to edit the annotation (with wiki style history). Once the slicer annotation module is working (summer 2011), we can extract information from there.
  • Pack as many thumbnails as possible horizontally (based on width of browser window and font size)
  • Only list one or two lines of text, the rest pops up on rollover.
  • Pack densly, use space sparingly

Top Level

Schiz-thumb.png Brain: Multi-modality (sMRI, DTI, fMRI) from Schizophrenia Study

There are 20 cases: ten are Normal Controls and ten are Schizophrenic. Each case includes a weighted T1 scan, a weighted T2 scan, an fMRI scan, a DTI volume, the DWI with 51 directions, and several masks and labelmaps. Available from Harvard.

Child-i.png Brain: 2-4 Year Old from Autism Study

Data for 2 autistic children and 2 normal controls (male, female) scanned at 2 years with follow up at 4 years from a 1.5T Siemens scanner. Files include structural data, tissue segmentation label map and subcortical structures segmentation. Available from UNC.

Lupus-i.png Brain: White Matter Lesions for Lupus Study

Data for 5 cases of Lupus White Matter Lesion patients. The data is co-registered. Each case contains: T1-weighted, T2-weighted, FLAIR, and masks for brain and lesions. Available from MIND.


One Level Down

  • Case 1, study 1
    • Lupus001
    • last update on 2010-04-12 14:32:11 (13.4 MB in 8 files)
    • Brain MRI study of a subject with Lupus Erythematodes.
    • Download this study: Just the data, data with a mrml file for Slicer 3.6
  • Case 1, study 2
    • Lupus002
    • last update on 2010-04-12 14:32:11 (13.4 MB in 8 files)
    • Brain MRI study of a subject with Lupus Erythematodes.
    • Download this study: Just the data, data with a mrml file for Slicer 3.6