Difference between revisions of "Slicer4:Diffusion"
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=Jan 2011= | =Jan 2011= | ||
| − | + | ==Outline of plans== | |
Define new infrastructure to allow efficient tractography (Demain, Lauren, Alex) | Define new infrastructure to allow efficient tractography (Demain, Lauren, Alex) | ||
| + | |||
| + | * Single ROI selection module | ||
| + | ** Generalization to model hierarchies | ||
| + | * Labelmap selection module | ||
| + | * Bundle representation | ||
| + | ** Reduce the memory footprint of bundles. First start, store in memory only the upper or lower triangular section of the matrix | ||
Port the fiducial tractography seeding to new infrastructure (Alex) | Port the fiducial tractography seeding to new infrastructure (Alex) | ||
| Line 18: | Line 24: | ||
Fiber laterality module (Lauren) | Fiber laterality module (Lauren) | ||
| + | Define new infrastructure to allow several different representations of diffusivity (ODF, fODF, two-tensor, tensor, etc.) | ||
| + | |||
| + | |||
| + | |||
| + | ==Schedule until June== | ||
| − | * | + | ===Features to be addressed=== |
| + | * Porting/profiling of existing functionality (Alex) | ||
| + | ** Tensor estimation, visualization and scalar extraction | ||
| + | ** Tractography (fiducial/labelmap) and visualization | ||
| + | ** Displayable manager infrastructure | ||
| + | * Workflows (Demian) | ||
| + | ** From DWI to full-brain tractography | ||
| + | ** Peritumoral tractography | ||
| + | * DBP/High-end post-processing modules for tractography (Lauren) | ||
| + | ** Cluster interaction | ||
| + | ** Laterality analysis | ||
| + | ** Tumor distance-transform (Isaiah) | ||
| + | * Fluid tractography exploration (Alex, this will be taken care of after the porting/profiling ) | ||
| + | ** Picking of fibers | ||
| + | ** ROI-based selection of fibers | ||
| + | ** Labelmap selection of fibers | ||
| + | * Usability testing / consultants (Isaiah, Ron, CF, Lauren, Demian) | ||
| + | * Extraction of statistical indices from a fiber bundle ( e.g.: Mean / std FA, length, ??volume?? ) | ||
Plan to meet weekly on Tuesday afternoons, 1249 Boylston. | Plan to meet weekly on Tuesday afternoons, 1249 Boylston. | ||
Revision as of 19:47, 1 February 2011
Home < Slicer4:DiffusionContents
Introduction
This page contains descriptions and plans for the dMRI framework in Slicer 4
Jan 2011
Outline of plans
Define new infrastructure to allow efficient tractography (Demain, Lauren, Alex)
- Single ROI selection module
- Generalization to model hierarchies
- Labelmap selection module
- Bundle representation
- Reduce the memory footprint of bundles. First start, store in memory only the upper or lower triangular section of the matrix
Port the fiducial tractography seeding to new infrastructure (Alex)
Port tensor estimation tools (Demian)
Implement quick and fluid exploration of pre-calculated full-brain tractographies
Cluster interactive exploration, cluster labeling (Lauren)
Fiber laterality module (Lauren)
Define new infrastructure to allow several different representations of diffusivity (ODF, fODF, two-tensor, tensor, etc.)
Schedule until June
Features to be addressed
- Porting/profiling of existing functionality (Alex)
- Tensor estimation, visualization and scalar extraction
- Tractography (fiducial/labelmap) and visualization
- Displayable manager infrastructure
- Workflows (Demian)
- From DWI to full-brain tractography
- Peritumoral tractography
- DBP/High-end post-processing modules for tractography (Lauren)
- Cluster interaction
- Laterality analysis
- Tumor distance-transform (Isaiah)
- Fluid tractography exploration (Alex, this will be taken care of after the porting/profiling )
- Picking of fibers
- ROI-based selection of fibers
- Labelmap selection of fibers
- Usability testing / consultants (Isaiah, Ron, CF, Lauren, Demian)
- Extraction of statistical indices from a fiber bundle ( e.g.: Mean / std FA, length, ??volume?? )
Plan to meet weekly on Tuesday afternoons, 1249 Boylston.
Feb 1, Discuss overall plan
Feb 8, Define new infrastructure to allow efficient tractography
Feb 15, Define new infrastructure to allow efficient tractography
Feb 22, Discuss user-interface work flow
Deliverables Feb: Have detailed plan for March and April
Mar 1
Mar 8
Mar 15
Mar 22
Mar 29
Deliverables Mar: Interactive tractography
Apr 5
Apr 12
Apr 19
Apr 26
Deliverables Apr:
May 3
May 10
May17
May 24
May 31
Deliverable May:
June: debug, test
June (AHM),
