Difference between revisions of "Slicer3:XND"

From Slicer Wiki
Jump to: navigation, search
Line 42: Line 42:
 
===Fixing misspecified tags===
 
===Fixing misspecified tags===
  
Back in "Folder view", any or all tags can be removed from managed files using the "Remove tag" or "Remove all" menu options as shown below. If you see any errors, remove a tag, and re-specify its value if appropriate.
+
Any or all tags can be removed from managed files using the "Remove tag" or "Remove all" menu options as shown below (in "Folder view"). If you see any errors, remove a tag, and re-specify its value if appropriate.
  
 
[[image:XNDremovetags.png]]
 
[[image:XNDremovetags.png]]

Revision as of 18:46, 6 August 2008

Home < Slicer3:XND

Example: Uploading data (non-dicom) to central.xnat.org using XNAT Desktop

Manage files to upload

First, select local directories/folders or individual files to manage with XNAT Desktop.

Select the Add managed directory icon, choose Repository->Add dir, or right click on a directory/folder for a menu option to manage that folder with XNAT Desktop, as shown below. Or, right click on an individual file for a menu option to manage that file.

XNDmanage2.png


Select tags for local data

Next, choose tags for describing your data using the icon on the toolbar, or the Repository->Manage tags menu option. XNAT has a set of default tags that are important to use, and custom tags can be added using the "New" option on the pop-up, as shown below.

XNDchoosetags2.png

Provide tag values for files you want to upload

Using the "Set Default tags" option, select datasets to be described, and quickly add values for the tags you chose in the previous step. These values will apply to all selected datasets.

XNDsetdefaulttags1.png

XNDsetdefaulttags2.png

Or select individual datasets to be described, and add values for appropriate tags to each through the "Set tag" menu option. Note, in this example, the Experiment tag for each subject 01030 and 01053 are unique: Normal_Subjects_01030 and Normal_Subjects_01053, respectively.

XNDsettag1.png

XNDsettag2.png


Switch to tag view and check data description

XNDtagview.png


Fixing misspecified tags

Any or all tags can be removed from managed files using the "Remove tag" or "Remove all" menu options as shown below (in "Folder view"). If you see any errors, remove a tag, and re-specify its value if appropriate.

XNDremovetags.png

Create a project on the hosted repository

In this example, the hosted respository is http://central.xnat.org

XNDcreateproject.png


New project on hosted repository should correspond to local data description

XNDnewproject.png

Create a subject for each subject in the data to be uploaded

XNDcreatesubjects.png


New subjects should correspond to local data description

Adding subject 01030.

XNDnewsubject1.png

Project display after adding two subjects.

XNDnewsubject2.png


Upload files to the hosted repository

The current release version of XNAT Desktop actually can only upload one experiment at a time. Using this version, to upload each experiment, select it in the tag view hierarchy and use the upload tool as shown below.

A new version of XNAT Desktop to be released soon supports uploading multiple experiments, and has also a number of important upload bug fixes.

XNDupload1.png

XNDupload2.png


Check progress in the XND console

XNDconsole.png


Check hosted repository for upload results

XNDresult.png


Adding more data to the project on hosted repository