Difference between revisions of "Slicer3:Mori-Atlas labels"
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*Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords | *Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords | ||
| − | * [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format. '''WARNING''': the conversion fails on the alpha channel, | + | * [http://labelpage.halle.us/ Go here] to create a text file in Slicer LUT format. '''WARNING''': the conversion fails on the alpha channel if using rgba(R, G, B, 255) instead of rgb(R, G, B) or rgba(R, G, B, 1.0). If the last column of the generated text file contains 65025, change it to 255. |
* [[Slicer3:Mori-Atlas_labels_JHU-MNI_SS_Type-I]] | * [[Slicer3:Mori-Atlas_labels_JHU-MNI_SS_Type-I]] | ||
* [[Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-II]] | * [[Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-II]] | ||
Latest revision as of 17:31, 19 May 2010
Home < Slicer3:Mori-Atlas labelsBack to LUTs and Ontologies
- Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
- Go here to create a text file in Slicer LUT format. WARNING: the conversion fails on the alpha channel if using rgba(R, G, B, 255) instead of rgb(R, G, B) or rgba(R, G, B, 1.0). If the last column of the generated text file contains 65025, change it to 255.
- Slicer3:Mori-Atlas_labels_JHU-MNI_SS_Type-I
- Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-II
- Slicer3:Mori_Atlas_labels_JHU-MNI_SS_Type-III
- List
Look-up Table for the Mori WM Atlas labels
Work in progress.
| integer_label | text_label | color |
|---|---|---|
| 0 | Background | rgba(0,0,0,0) |
| 1 | MCP_Middle_cerebellar_peduncle | gold |
| 2 | PCT_Pontine_crossing_tract_(a_part_of_MCP) genotype | navajowhite |
| 3 | GCC_Genu_of_corpus_callosum | plum |
| 4 | BCC_Body_of_corpus_callosum | pink |
| 5 | SCC_Splenium_of_corpus_callosum | deeppink |
| 6 | FX_Fornix_(column_and_body_of_fornix) | peru |
| 7 | CST-R_Corticospinal_tract_right | tan |
| 8 | CST-L_Corticospinal_tract_left | tan |
| 9 | ML-R_Medial_lemniscus_right | mediumspringgreen |
| 10 | ML-L_Medial_lemniscus_left | mediumspringgreen |
| 11 | ICP-R_Inferior_cerebellar_peduncle_right | palegreen |
| 12 | ICP-L_Inferior_cerebellar_peduncle_left | palegreen |
| 13 | SCP-R_Superior_cerebellar_peduncle_right | bisque |
| 14 | SCP-L_Superior_cerebellar_peduncle_left | bisque |
| 15 | CP-R_Cerebral_peduncle_right | khaki |
| 16 | CP-L_Cerebral_peduncle_left | khaki |
| 17 | ALIC-R_Anterior_limb_of_internal_capsule_right | lightskyblue |
| 18 | ALIC-L_Anterior_limb_of_internal_capsule_left | lightskyblue |
| 19 | PLIC-R_Posterior_limb_of_internal_capsule_right | dodgerblue |
| 20 | PLIC-L_Posterior_limb_of_internal_capsule_left | dodgerblue |
| 21 | RLIC-R_Retrolenticular_part_of_internal_capsule_right | deepskyblue |
| 22 | RLIC-L_Retrolenticular_part_of_internal_capsule_left | deepskyblue |
| 23 | ACR-R_Anterior_corona_radiata_right | powderblue |
| 24 | ACR-L_Anterior_corona_radiata_left | powderblue |
| 25 | SCR-R_Superior_corona_radiata_right | blue |
| 26 | SCR-L_Superior_corona_radiata_left | blue |
| 27 | PCR-R_Posterior_corona_radiata_right | skyblue |
| 28 | PCR-L_Posterior_corona_radiata_left | skyblue |
| 29 | PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right | sandybrown |
| 30 | PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left | sandybrown |
| 31 | SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right | peachpuff |
| 32 | SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left | peachpuff |
| 33 | EC-R_External_capsule_right | darksalmon |
| 34 | EC-L_External_capsule_left | darksalmon |
| 35 | CGC-R_Cingulum_(cingulate_gyrus)_right | mediumseagreen |
| 36 | CGC-L_Cingulum_(cingulate_gyrus)_left | mediumseagreen |
| 37 | CGH-R_Cingulum_(hippocampus)_right | darkkhaki |
| 38 | CGH-L_Cingulum_(hippocampus)_left | darkkhaki |
| 39 | FX-R_Fornix_Stria_terminalis_right | darkgoldenrod |
| 40 | FX-L_Fornix_Stria_terminalis_left | darkgoldenrod |
| 41 | SLF-R_Superior_longitudinal_fasciculus_right | lightgray |
| 42 | SLF-L_Superior_longitudinal_fasciculus_left | lightgray |
| 43 | SFO-R_Superior_fronto-occipital_fasciculus_right | darkgrey |
| 44 | SFO-R_Superior_fronto-occipital_fasciculus_left | darkgrey |
| 45 | IFO-R_Inferior_fronto-occipital_fasciculus_right | gray |
| 46 | IFO-L_Inferior_fronto-occipital_fasciculus_left | gray |
| 47 | UNC-R_Uncinate_fasciculus_right | brown |
| 48 | UNC-L_Uncinate_fasciculus_left | brown |
| 49 | TAP-R_Tapetum_right | mistyrose |
| 50 | TAP-L_Tapetum_left | mistyrose |
