Difference between revisions of "Slicer3:Mori-Atlas labels"

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Line 133: Line 133:
 
|7  
 
|7  
 
| CST-R_Corticospinal_tract_right
 
| CST-R_Corticospinal_tract_right
−
| style="background:violet"| tan
+
| style="background:tan"| tan
 
|-
 
|-
 
| 8  
 
| 8  
 
| CST-L_Corticospinal_tract_left
 
| CST-L_Corticospinal_tract_left
−
| style="background:violet"| tan
+
| style="background:tan"| tan
 
|-
 
|-
 
| 9  
 
| 9  
Line 175: Line 175:
 
| style="background:palegreen"| palegreen
 
| style="background:palegreen"| palegreen
 
|-
 
|-
−
| 18 ALIC-L_Anterior_limb_of_internal_capsule_left
+
| 18  
−
19 PLIC-R_Posterior_limb_of_internal_capsule_right
+
| ALIC-L_Anterior_limb_of_internal_capsule_left
−
20 PLIC-L_Posterior_limb_of_internal_capsule_left
+
| style="background:palegreen"| palegreen
−
21 RLIC-R_Retrolenticular_part_of_internal_capsule_right
+
|-
−
22 RLIC-L_Retrolenticular_part_of_internal_capsule_left
+
| 19  
−
23 ACR-R_Anterior_corona_radiata_right
+
| PLIC-R_Posterior_limb_of_internal_capsule_right
−
24 ACR-L_Anterior_corona_radiata_left
+
| style="background:palegreen"| palegreen
−
25 SCR-R_Superior_corona_radiata_right
+
|-
−
26 SCR-L_Superior_corona_radiata_left
+
| 20  
−
27 PCR-R_Posterior_corona_radiata_right
+
| PLIC-L_Posterior_limb_of_internal_capsule_left
−
28 PCR-L_Posterior_corona_radiata_left
+
| style="background:palegreen"| palegreen
−
29 PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right
+
|-
−
30 PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left
+
| 21  
−
31 SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right
+
| RLIC-R_Retrolenticular_part_of_internal_capsule_right
−
32 SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left
+
| style="background:palegreen"| palegreen
−
33 EC-R_External_capsule_right
+
|-
−
34 EC-L_External_capsule_left
+
| 22  
−
35 CGC-R_Cingulum_(cingulate_gyrus)_right
+
| RLIC-L_Retrolenticular_part_of_internal_capsule_left
−
36 CGC-L_Cingulum_(cingulate_gyrus)_left
+
| style="background:palegreen"| palegreen
−
37 CGH-R_Cingulum_(hippocampus)_right
+
|-
−
38 CGH-L_Cingulum_(hippocampus)_left
+
| 23  
−
39 FX-R_Fornix_Stria_terminalis_right
+
| ACR-R_Anterior_corona_radiata_right
−
40 FX-L_Fornix_Stria_terminalis_left
+
| style="background:palegreen"| palegreen
−
41 SLF-R_Superior_longitudinal_fasciculus_right
+
|-
−
42 SLF-L_Superior_longitudinal_fasciculus_left
+
| 24  
−
43 SFO-R_Superior_fronto-occipital_fasciculus_right
+
| ACR-L_Anterior_corona_radiata_left
−
44 SFO-R_Superior_fronto-occipital_fasciculus_left
+
| style="background:palegreen"| palegreen
−
45 IFO-R_Inferior_fronto-occipital_fasciculus_right
+
|-
−
46 IFO-L_Inferior_fronto-occipital_fasciculus_left
+
| 25  
−
47 UNC-R_Uncinate_fasciculus_right
+
| SCR-R_Superior_corona_radiata_right
−
48 UNC-L_Uncinate_fasciculus_left
+
| style="background:palegreen"| palegreen
−
49 TAP-R_Tapatum_right
+
|-
−
50 TAP-L_Tapatum_left
+
| 26  
 +
| SCR-L_Superior_corona_radiata_left
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 27  
 +
| PCR-R_Posterior_corona_radiata_right
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 28  
 +
| PCR-L_Posterior_corona_radiata_left
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 29  
 +
| PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 30  
 +
| PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 31  
 +
| SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 32  
 +
| SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 33  
 +
| EC-R_External_capsule_right
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 34  
 +
| EC-L_External_capsule_left
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 35  
 +
| CGC-R_Cingulum_(cingulate_gyrus)_right
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 36  
 +
| CGC-L_Cingulum_(cingulate_gyrus)_left
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 37  
 +
| CGH-R_Cingulum_(hippocampus)_right
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 38  
 +
| CGH-L_Cingulum_(hippocampus)_left
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 39  
 +
| FX-R_Fornix_Stria_terminalis_right
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 40  
 +
| FX-L_Fornix_Stria_terminalis_left
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 41  
 +
| SLF-R_Superior_longitudinal_fasciculus_right
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 42  
 +
| SLF-L_Superior_longitudinal_fasciculus_left
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 43  
 +
| SFO-R_Superior_fronto-occipital_fasciculus_right
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 44  
 +
| SFO-R_Superior_fronto-occipital_fasciculus_left
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 45  
 +
| IFO-R_Inferior_fronto-occipital_fasciculus_right
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 46  
 +
| IFO-L_Inferior_fronto-occipital_fasciculus_left
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 47  
 +
| UNC-R_Uncinate_fasciculus_right
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 48  
 +
| UNC-L_Uncinate_fasciculus_left
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 49  
 +
| TAP-R_Tapatum_right
 +
| style="background:palegreen"| palegreen
 +
|-
 +
| 50  
 +
| TAP-L_Tapatum_left
 +
| style="background:palegreen"| palegreen
 +
|-
 
|}
 
|}

Revision as of 12:32, 21 April 2010

Home < Slicer3:Mori-Atlas labels
Back to LUTs and Ontologies
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2010 Brain LUT for Slicer general applications

integer_label text_label color notes
0 Background rgba(0,0,0,0) black
1 Bone rgb(240,255,240) honeydew
2 Skin rgb(233, 150, 122) darksalmon
3 Muscles rgb(205,92,92) indianred
4 Fat rgb(238,232,170) palegoldenrod
5 CSF rgb(0,191,255) deepskyblue
6 Ventricles rgb(65,105,225) royalblue
7 Arteries rgb(250,128,114) salmon
8 Veins rgb(70,130,180) steelblue
9 Gray matter rgb(211,211,211) lightgrey
10 White matter rgb(255,255,240) ivory
11 Tumor rgb(144,238,144) lightgreen
12 Edema rgb(224,255,255) lightcyan
13 Necrosis rgb(216,191,216) thistle
14 Structure 1 rgb(238,130,238) violet
15 Structure 2 rgb(255,215,0) gold


Look-up Table for the Mori WM Atlas labels

Work in progress.

integer_label text_label color
0 Background rgba(0,0,0,0)
1 MCP_Middle_cerebellar_peduncle gold
2 PCT_Pontine_crossing_tract_(a_part_of_MCP) navajowhite
3 GCC_Genu_of_corpus_callosum lightpink
4 BCC_Body_of_corpus_callosum pink
5 SCC_Splenium_of_corpus_callosum deeppink
6 FX_Fornix_(column_and_body_of_fornix) peru
7 CST-R_Corticospinal_tract_right tan
8 CST-L_Corticospinal_tract_left tan
9 ML-R_Medial_lemniscus_right palegreen
10 ML-L_Medial_lemniscus_left palegreen
11 ICP-R_Inferior_cerebellar_peduncle_right palegreen
12 ICP-L_Inferior_cerebellar_peduncle_left palegreen
13 SCP-R_Superior_cerebellar_peduncle_right palegreen
14 SCP-L_Superior_cerebellar_peduncle_left palegreen
15 CP-R_Cerebral_peduncle_right palegreen
16 CP-L_Cerebral_peduncle_left palegreen
17 ALIC-R_Anterior_limb_of_internal_capsule_right palegreen
18 ALIC-L_Anterior_limb_of_internal_capsule_left palegreen
19 PLIC-R_Posterior_limb_of_internal_capsule_right palegreen
20 PLIC-L_Posterior_limb_of_internal_capsule_left palegreen
21 RLIC-R_Retrolenticular_part_of_internal_capsule_right palegreen
22 RLIC-L_Retrolenticular_part_of_internal_capsule_left palegreen
23 ACR-R_Anterior_corona_radiata_right palegreen
24 ACR-L_Anterior_corona_radiata_left palegreen
25 SCR-R_Superior_corona_radiata_right palegreen
26 SCR-L_Superior_corona_radiata_left palegreen
27 PCR-R_Posterior_corona_radiata_right palegreen
28 PCR-L_Posterior_corona_radiata_left palegreen
29 PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right palegreen
30 PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left palegreen
31 SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right palegreen
32 SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left palegreen
33 EC-R_External_capsule_right palegreen
34 EC-L_External_capsule_left palegreen
35 CGC-R_Cingulum_(cingulate_gyrus)_right palegreen
36 CGC-L_Cingulum_(cingulate_gyrus)_left palegreen
37 CGH-R_Cingulum_(hippocampus)_right palegreen
38 CGH-L_Cingulum_(hippocampus)_left palegreen
39 FX-R_Fornix_Stria_terminalis_right palegreen
40 FX-L_Fornix_Stria_terminalis_left palegreen
41 SLF-R_Superior_longitudinal_fasciculus_right palegreen
42 SLF-L_Superior_longitudinal_fasciculus_left palegreen
43 SFO-R_Superior_fronto-occipital_fasciculus_right palegreen
44 SFO-R_Superior_fronto-occipital_fasciculus_left palegreen
45 IFO-R_Inferior_fronto-occipital_fasciculus_right palegreen
46 IFO-L_Inferior_fronto-occipital_fasciculus_left palegreen
47 UNC-R_Uncinate_fasciculus_right palegreen
48 UNC-L_Uncinate_fasciculus_left palegreen
49 TAP-R_Tapatum_right palegreen
50 TAP-L_Tapatum_left palegreen
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