Difference between revisions of "Slicer3:Mori-Atlas labels"
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| − | =Mori WM Atlas= | + | =Look-up Table for the Mori WM Atlas labels= |
Work in progress. | Work in progress. | ||
{| class="wikitable sortable labelpage labelpagetable" border="1" | {| class="wikitable sortable labelpage labelpagetable" border="1" | ||
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| − | + | 3 GCC_Genu_of_corpus_callosum | |
| − | + | 4 BCC_Body_of_corpus_callosum | |
| − | + | 5 SCC_Splenium_of_corpus_callosum | |
| − | + | 6 FX_Fornix_(column_and_body_of_fornix) | |
| − | + | 7 CST-R_Corticospinal_tract_right | |
| − | + | 8 CST-L_Corticospinal_tract_left | |
| − | + | 9 ML-R_Medial_lemniscus_right | |
| − | + | 10 ML-L_Medial_lemniscus_left | |
| − | + | 11 ICP-R_Inferior_cerebellar_peduncle_right | |
| − | + | 12 ICP-L_Inferior_cerebellar_peduncle_left | |
| − | + | 13 SCP-R_Superior_cerebellar_peduncle_right | |
| − | + | 14 SCP-L_Superior_cerebellar_peduncle_left | |
| − | + | 15 CP-R_Cerebral_peduncle_right | |
| − | + | 16 CP-L_Cerebral_peduncle_left | |
| − | + | 17 ALIC-R_Anterior_limb_of_internal_capsule_right | |
| − | + | 18 ALIC-L_Anterior_limb_of_internal_capsule_left | |
| − | + | 19 PLIC-R_Posterior_limb_of_internal_capsule_right | |
| − | + | 20 PLIC-L_Posterior_limb_of_internal_capsule_left | |
| − | + | 21 RLIC-R_Retrolenticular_part_of_internal_capsule_right | |
| − | + | 22 RLIC-L_Retrolenticular_part_of_internal_capsule_left | |
| − | + | 23 ACR-R_Anterior_corona_radiata_right | |
| − | + | 24 ACR-L_Anterior_corona_radiata_left | |
| − | + | 25 SCR-R_Superior_corona_radiata_right | |
| − | + | 26 SCR-L_Superior_corona_radiata_left | |
| − | + | 27 PCR-R_Posterior_corona_radiata_right | |
| − | + | 28 PCR-L_Posterior_corona_radiata_left | |
| − | + | 29 PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right | |
| − | + | 30 PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left | |
| − | + | 31 SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right | |
| − | + | 32 SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left | |
| − | + | 33 EC-R_External_capsule_right | |
| − | + | 34 EC-L_External_capsule_left | |
| − | + | 35 CGC-R_Cingulum_(cingulate_gyrus)_right | |
| − | + | 36 CGC-L_Cingulum_(cingulate_gyrus)_left | |
| − | + | 37 CGH-R_Cingulum_(hippocampus)_right | |
| − | + | 38 CGH-L_Cingulum_(hippocampus)_left | |
| − | + | 39 FX-R_Fornix_Stria_terminalis_right | |
| − | + | 40 FX-L_Fornix_Stria_terminalis_left | |
| − | + | 41 SLF-R_Superior_longitudinal_fasciculus_right | |
| − | + | 42 SLF-L_Superior_longitudinal_fasciculus_left | |
| − | + | 43 SFO-R_Superior_fronto-occipital_fasciculus_right | |
| − | + | 44 SFO-R_Superior_fronto-occipital_fasciculus_left | |
| − | + | 45 IFO-R_Inferior_fronto-occipital_fasciculus_right | |
| − | + | 46 IFO-L_Inferior_fronto-occipital_fasciculus_left | |
| − | + | 47 UNC-R_Uncinate_fasciculus_right | |
| − | + | 48 UNC-L_Uncinate_fasciculus_left | |
| − | + | 49 TAP-R_Tapatum_right | |
| − | + | 50 TAP-L_Tapatum_left | |
| − | |||
Revision as of 12:11, 21 April 2010
Home < Slicer3:Mori-Atlas labelsBack to LUTs and Ontologies
- Standard color names and values: http://www.w3.org/TR/SVG/types.html#ColorKeywords
- Go here to create a text file in Slicer LUT format.
- List
2010 Brain LUT for Slicer general applications
| integer_label | text_label | color | notes |
|---|---|---|---|
| 0 | Background | rgba(0,0,0,0) | black |
| 1 | Bone | rgb(240,255,240) | honeydew |
| 2 | Skin | rgb(233, 150, 122) | darksalmon |
| 3 | Muscles | rgb(205,92,92) | indianred |
| 4 | Fat | rgb(238,232,170) | palegoldenrod |
| 5 | CSF | rgb(0,191,255) | deepskyblue |
| 6 | Ventricles | rgb(65,105,225) | royalblue |
| 7 | Arteries | rgb(250,128,114) | salmon |
| 8 | Veins | rgb(70,130,180) | steelblue |
| 9 | Gray matter | rgb(211,211,211) | lightgrey |
| 10 | White matter | rgb(255,255,240) | ivory |
| 11 | Tumor | rgb(144,238,144) | lightgreen |
| 12 | Edema | rgb(224,255,255) | lightcyan |
| 13 | Necrosis | rgb(216,191,216) | thistle |
| 14 | Structure 1 | rgb(238,130,238) | violet |
| 15 | Structure 2 | rgb(255,215,0) | gold |
Look-up Table for the Mori WM Atlas labels
Work in progress.
| integer_label | text_label | color |
|---|---|---|
| 0 | Background | rgba(0,0,0,0) |
| 1 | MCP_Middle_cerebellar_peduncle | gold |
| 2 | PCT_Pontine_crossing_tract_(a_part_of_MCP) | violet |
3 GCC_Genu_of_corpus_callosum 4 BCC_Body_of_corpus_callosum 5 SCC_Splenium_of_corpus_callosum 6 FX_Fornix_(column_and_body_of_fornix) 7 CST-R_Corticospinal_tract_right 8 CST-L_Corticospinal_tract_left 9 ML-R_Medial_lemniscus_right 10 ML-L_Medial_lemniscus_left 11 ICP-R_Inferior_cerebellar_peduncle_right 12 ICP-L_Inferior_cerebellar_peduncle_left 13 SCP-R_Superior_cerebellar_peduncle_right 14 SCP-L_Superior_cerebellar_peduncle_left 15 CP-R_Cerebral_peduncle_right 16 CP-L_Cerebral_peduncle_left 17 ALIC-R_Anterior_limb_of_internal_capsule_right 18 ALIC-L_Anterior_limb_of_internal_capsule_left 19 PLIC-R_Posterior_limb_of_internal_capsule_right 20 PLIC-L_Posterior_limb_of_internal_capsule_left 21 RLIC-R_Retrolenticular_part_of_internal_capsule_right 22 RLIC-L_Retrolenticular_part_of_internal_capsule_left 23 ACR-R_Anterior_corona_radiata_right 24 ACR-L_Anterior_corona_radiata_left 25 SCR-R_Superior_corona_radiata_right 26 SCR-L_Superior_corona_radiata_left 27 PCR-R_Posterior_corona_radiata_right 28 PCR-L_Posterior_corona_radiata_left 29 PTR-R_Posterior_thalamic_radiation_(include_optic_radiation)_right 30 PTR-L_Posterior_thalamic_radiation_(include_optic_radiation)_left 31 SS-R_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_right 32 SS-L_Sagittal_stratum_(include_inferior_longitidinal_fasciculus_and_inferior_fronto-occipital_fasciculus)_left 33 EC-R_External_capsule_right 34 EC-L_External_capsule_left 35 CGC-R_Cingulum_(cingulate_gyrus)_right 36 CGC-L_Cingulum_(cingulate_gyrus)_left 37 CGH-R_Cingulum_(hippocampus)_right 38 CGH-L_Cingulum_(hippocampus)_left 39 FX-R_Fornix_Stria_terminalis_right 40 FX-L_Fornix_Stria_terminalis_left 41 SLF-R_Superior_longitudinal_fasciculus_right 42 SLF-L_Superior_longitudinal_fasciculus_left 43 SFO-R_Superior_fronto-occipital_fasciculus_right 44 SFO-R_Superior_fronto-occipital_fasciculus_left 45 IFO-R_Inferior_fronto-occipital_fasciculus_right 46 IFO-L_Inferior_fronto-occipital_fasciculus_left 47 UNC-R_Uncinate_fasciculus_right 48 UNC-L_Uncinate_fasciculus_left 49 TAP-R_Tapatum_right 50 TAP-L_Tapatum_left
