Difference between revisions of "Slicer3:FAQ"

From Slicer Wiki
Jump to: navigation, search
m (Text replacement - "\[http:\/\/www\.slicer\.org\/slicerWiki\/index\.php\/([^ ]+) ([^]]+)]" to "$2")
 
(15 intermediate revisions by one other user not shown)
Line 1: Line 1:
 +
'''This page has been deprecated. Please refer to the [[Slicer-3-6-FAQ|'''new Slicer 3.6 FAQ here]]'''
 +
 
= User FAQ : installation & general use =  
 
= User FAQ : installation & general use =  
  
Line 10: Line 12:
 
We've seen this sort of thing happen when you have incompatible dll's installed.  E.g. so programs will install a vtkCommon.dll into your window system folder and windows tries to use it instead of the one that comes with windows.  You could try doing a search for vtk*.dll in your system and remove or rename any that are not in slicer as a test.
 
We've seen this sort of thing happen when you have incompatible dll's installed.  E.g. so programs will install a vtkCommon.dll into your window system folder and windows tries to use it instead of the one that comes with windows.  You could try doing a search for vtk*.dll in your system and remove or rename any that are not in slicer as a test.
  
= User FAQ : registration =
 
 
== How do I fix a wrong image orientation? / My image appears upside down / facing the wrong way / I have incorrect/missing axis orientation ==
 
 
== What do the coordinate labels R,A,S and (negative numbers) mean? ==
 
 
== How do I fix incorrect voxel size / aspect ratio of a loaded image volume? ==
 
 
== The images are very far apart / do not overlap ==
 
 
== How do I register a DWI image dataset to a structural reference scan? (Cookbook) ==
 
 
== Can I manually adjust or correct a registration? ==
 
 
== What's the difference between the various registration methods listed in Slicer? ==
 
 
== What's the purpose of masking / VOI in registration? ==
 
 
== Registration failed with an error. What should I try next? ==
 
 
== Registration result is wrong or worse than before? ==
 
 
== How many sample points should I choose for my registration? ==
 
 
== I want to register two images with different intensity/contrast. ==
 
 
== How important is bias field correction / intensity inhomogeneity correction? ==
 
 
== Have the Slicer registration methods been validated? ==
 
 
== I want to register many image pairs of the same type. Can I use Slicer registration in batch mode? ==
 
 
== How can I save the parameter settings I have selected for later use or sharing? ==
 
 
== Registration is too slow. How can I speed up my registration? ==
 
 
== Registration results are inconsistent and don't work on some image pairs. Are there ways to make registration more robust? ==
 
 
== One of my images has a clipped field of view. Can I still use automated registration? ==
 
 
== I ran a registration but cannot see the result. How do I visualize the result transform? ==
 
 
== What's the difference between Rigid and Affine registration? ==
 
 
== What's the difference between Affine and BSpline registration? ==
 
 
== The nonrigid (BSpline) registration transform does not seem to be nonrigid or does not show up correctly. ==
 
 
== Can I combine multiple registrations? ==
 
 
== Can I combine image and surface registration? ==
 
 
== What's the difference between BRAINSfit and BRAINSDemonWarp? ==
 
 
== Is the BRAINSfit registration for brain images only? ==
 
 
== What's the difference between Fast Rigid and Linear Registration? ==
 
 
== Which registration methods offer non-rigid transforms? ==
 
 
== Which registration methods offer masking? ==
 
 
 
 
= User FAQ : segmentation =
 
  
 
= Developer FAQ =
 
= Developer FAQ =

Latest revision as of 02:34, 27 November 2019

Home < Slicer3:FAQ

This page has been deprecated. Please refer to the new Slicer 3.6 FAQ here

User FAQ : installation & general use

Is slicer3 ready for end users yet?

Yes! See the home page.

DLL Problems on Windows

I just download the 3D Slicer binaries for Windows and unpacked it. When I doubleclicked the file "slice2-win32-x86.ext", it gave out the error message can't find package vtk while executing "package require vtk" invoked from within "set::SLICER(VTK_VERSION) [package require vtk]" (file "C:/slicer2/Base/tck/Go.tck" line 483).

We've seen this sort of thing happen when you have incompatible dll's installed. E.g. so programs will install a vtkCommon.dll into your window system folder and windows tries to use it instead of the one that comes with windows. You could try doing a search for vtk*.dll in your system and remove or rename any that are not in slicer as a test.


Developer FAQ

Where can I find out about writing code for slicer3?

The Developers page has lots of information.