Difference between revisions of "Slicer3:2010 GenericAnatomyColors"

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2010 Atlas label lookup table, with colors chosen based on traditional anatomic atlases.
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2010 Generic Anatomy Colors for use with the Slicer3 Editor Module as a default color table for editing medical image data with no prior knowledge of the condition, modality, or specific anatomical region being displayed.  When additional protocol knowledge is available (i.e. angiography of the brain) a different color table with more specific labels may be chosen.
  
 
Authors: Michael Halle, Florin Talos, Ron Kikinis, Steve Pieper, Nicole Aucoin.
 
Authors: Michael Halle, Florin Talos, Ron Kikinis, Steve Pieper, Nicole Aucoin.

Revision as of 12:39, 10 June 2010

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Back to LUT and ontologies page

2010 Generic Anatomy Colors for use with the Slicer3 Editor Module as a default color table for editing medical image data with no prior knowledge of the condition, modality, or specific anatomical region being displayed. When additional protocol knowledge is available (i.e. angiography of the brain) a different color table with more specific labels may be chosen.

Authors: Michael Halle, Florin Talos, Ron Kikinis, Steve Pieper, Nicole Aucoin.

Lookup table

integer_label text_label color notes
0 background rgba(0,0,0,0)
1 unsegmented region rgb(100,100,130)
2 gray matter rgb(200,200,235)
3 white matter rgb(250,250,210)
4 nerve rgb(244,214,49)
5 vein rgb(0,151,206)
6 artery rgb(216,101,79)
7 capillary rgb(183,156,220)
8 ligament rgb(183,214,211)
9 tendon rgb(152,189,207)
10 cartilage rgb(111,184,210)
11 meniscus rgb(178,212,242)
12 muscle rgb(192,104,88)
13 skin rgb(177,122,101)
14 bone rgb(241,214,145)
15 lymph node rgb(68,172,100)
16 lymphatic vessel rgb(111,197,131)
17 blood rgb(216,101,79)
18 cerebro-spinal fluid rgb(85,188,255)
19 bile rgb(0,145,30)
20 urine rgb(214,230,130)
21 feces rgb(78,63,0)
22 gas rgb(218,255,255)
23 fluid rgb(170,250,250)
24 tumor rgb(144,238,144)
25 edema rgb(140,224,228)
26 bleeding rgb(188,65,28)
27 necrosis rgb(216,191,216)
28 clot rgb(145,60,66)
29 embolism rgb(150,98,83)
30 head rgb(177,122,101)
31 central nervous system rgb(244,214,49)
32 brain rgb(250,250,225)
33 gray matter of brain rgb(200,200,215)
34 telencephalon rgb(68,131,98)
35 cerebral cortex rgb(128,174,128)
36 right frontal lobe rgb(83,146,164)
37 left frontal lobe rgb(83,146,164)
38 right temporal lobe rgb(162,115,105)
39 left temporal lobe rgb(162,115,105)
40 right parietal lobe rgb(141,93,137)
41 left parietal lobe rgb(141,93,137)
42 right occipital lobe rgb(182,166,110)
43 left occipital lobe rgb(182,166,110)
44 right insular lobe rgb(188,135,166)
45 left insular lobe rgb(188,135,166)
46 right limbic lobe rgb(154,150,201)
47 left limbic lobe rgb(154,150,201)
48 right striatum rgb(177,140,190)
49 left striatum rgb(177,140,190)
50 right caudate nucleus rgb(30,111,85)
51 left caudate nucleus rgb(30,111,85)
52 right putamen rgb(210,157,166)
53 left putamen rgb(210,157,166)
54 right pullidum rgb(48,129,126)
55 left pallidum rgb(48,129,126)
56 right amygdaloid complex rgb(98,153,112)
57 left amygdaloid complex rgb(98,153,112)
58 diencephalon rgb(69,110,53)
59 thalamus rgb(166,113,137)
60 right thalamus rgb(122,101,38)
61 left thalamus rgb(122,101,38)
62 pineal gland rgb(253,135,192)
63 midbrain rgb(145,92,109)
64 substantia nigra rgb(46,101,131)
65 right substantia nigra rgb(0,108,112)
66 left substantia nigra rgb(0,108,112)
67 cerebral white matter rgb(250,250,225)
68 right superior longitudinal fasciculus rgb(127,150,88)
69 left superior longitudinal fasciculus rgb(127,150,88)
70 right inferior longitudinal fasciculus rgb(159,116,163)
71 left inferior longitudinal fasciculus rgb(159,116,163)
72 right arcuate fasciculus rgb(125,102,154)
73 left arcuate fasciculus rgb(125,102,154)
74 right uncinate fasciculus rgb(106,174,155)
75 left uncinate fasciculus rgb(106,174,155)
76 right cingulum bundle rgb(154,146,83)
77 left cingulum bundle rgb(154,146,83)
78 projection fibers rgb(126,126,55)
79 right corticospinal tract rgb(201,160,133)
80 left corticospinal tract rgb(201,160,133)
81 right optic radiation rgb(78,152,141)
82 left optic radiation rgb(78,152,141)
83 right medial lemniscus rgb(174,140,103)
84 left medial lemniscus rgb(174,140,103)
85 right superior cerebellar peduncle rgb(139,126,177)
86 left superior cerebellar peduncle rgb(139,126,177)
87 right middle cerebellar peduncle rgb(148,120,72)
88 left middle cerebellar peduncle rgb(148,120,72)
89 right inferior cerebellar peduncle rgb(186,135,135)
90 left inferior cerebellar peduncle rgb(186,135,135)
91 optic chiasm rgb(99,106,24)
92 right optic tract rgb(156,171,108)
93 left optic tract rgb(156,171,108)
94 right fornix rgb(64,123,147)
95 left fornix rgb(64,123,147)
96 commissural fibers rgb(138,95,74)
97 corpus callosum rgb(97,113,158)
98 posterior commissure rgb(126,161,197)
99 cerebellar white matter rgb(194,195,164)
100 CSF space rgb(85,188,255)
101 ventricles of brain rgb(88,106,215)
102 right lateral ventricle rgb(88,106,215)
103 left lateral ventricle rgb(88,106,215)
104 right third ventricle rgb(88,106,215)
105 left third ventricle rgb(88,106,215)
106 cerebral aqueduct rgb(88,106,215)
107 fourth ventricle rgb(88,106,215)
108 subarachnoid space rgb(88,106,215)
109 spinal cord rgb(244,214,49)
110 gray matter of spinal cord rgb(200,200,215)
111 white matter of spinal cord rgb(250,250,225)
112 endocrine system of brain rgb(82,174,128)
113 pituitary gland rgb(57,157,110)
114 adenohypophysis rgb(60,143,83)
115 neurohypophysis rgb(92,162,109)
116 meninges rgb(255,244,209)
117 dura mater rgb(255,244,209)
118 arachnoid rgb(255,244,209)
119 pia mater rgb(255,244,209)
120 muscles of head rgb(201,121,77)
121 salivary glands rgb(70,163,117)
122 lips rgb(188,91,95)
123 nose rgb(177,122,101)
124 tongue rgb(166,84,94)
125 soft palate rgb(182,105,107)
126 right inner ear rgb(229,147,118)
127 left inner ear rgb(229,147,118)
128 right external ear rgb(174,122,90)
129 left external ear rgb(174,122,90)
130 right middle ear rgb(201,112,73)
131 left middle ear rgb(201,112,73)
132 right eyeball rgb(194,142,0)
133 left eyeball rgb(194,142,0)
134 skull rgb(241,213,144)
135 right frontal bone rgb(203,179,77)
136 left frontal bone rgb(203,179,77)
137 right parietal bone rgb(229,204,109)
138 left parietal bone rgb(229,204,109)
139 right temporal bone rgb(255,243,152)
140 left temporal bone rgb(255,243,152)
141 right sphenoid bone rgb(209,185,85)
142 left sphenoid bone rgb(209,185,85)
143 right ethmoid bone rgb(248,223,131)
144 left ethmoid bone rgb(248,223,131)
145 occipital bone rgb(255,230,138)
146 maxilla rgb(196,172,68)
147 right zygomatic bone rgb(255,255,167)
148 right lacrimal bone rgb(255,250,160)
149 vomer bone rgb(255,237,145)
150 right palatine bone rgb(242,217,123)
151 left palatine bone rgb(242,217,123)
152 mandible rgb(222,198,101)
153 teeth rgb(255,250,220)
154 neck rgb(177,122,101)
155 muscles of neck rgb(213,124,109)
156 pharynx rgb(184,105,108)
157 larynx rgb(150,208,243)
158 thyroid gland rgb(62,162,114)
159 right parathyroid glands rgb(62,162,114)
160 left parathyroid glands rgb(62,162,114)
161 skeleton of neck rgb(242,206,142)
162 hyoid bone rgb(250,210,139)
163 cervical vertebral column rgb(255,255,207)
164 thorax rgb(177,122,101)
165 trachea rgb(182,228,255)
166 bronchi rgb(175,216,244)
167 right lung rgb(197,165,145)
168 left lung rgb(197,165,145)
169 superior lobe of right lung rgb(172,138,115)
170 superior lobe of left lung rgb(172,138,115)
171 middle lobe of right lung rgb(202,164,140)
172 inferior lobe of right lung rgb(224,186,162)
173 inferior lobe of left lung rgb(224,186,162)
174 pleura rgb(255,245,217)
175 heart rgb(206,110,84)
176 right atrium rgb(210,115,89)
177 left atrium rgb(203,108,81)
178 atrial septum rgb(233,138,112)
179 ventricular septum rgb(195,100,73)
180 right ventricle of heart rgb(181,85,57)
181 left ventricle of heart rgb(152,55,13)
182 mitral valve rgb(159,63,27)
183 tricuspid valve rgb(166,70,38)
184 aortic valve rgb(218,123,97)
185 pulmonary valve rgb(225,130,104)
186 aorta rgb(224,97,76)
187 pericardium rgb(255,244,209)
188 pericardial cavity rgb(184,122,154)
189 esophagus rgb(211,171,143)
190 thymus rgb(47,150,103)
191 mediastinum rgb(255,244,209)
192 skin of thoracic wall rgb(173,121,88)
193 muscles of thoracic wall rgb(188,95,76)
194 skeleton of thorax rgb(255,239,172)
195 thoracic vertebral column rgb(226,202,134)
196 ribs rgb(253,232,158)
197 sternum rgb(244,217,154)
198 right clavicle rgb(205,179,108)
199 left clavicle rgb(205,179,108)
200 abdominal cavity rgb(186,124,161)
201 abdomen rgb(177,122,101)
202 peritoneum rgb(255,255,220)
203 omentum rgb(234,234,194)
204 peritoneal cavity rgb(204,142,178)
205 retroperitoneal space rgb(180,119,153)
206 stomach rgb(216,132,105)
207 duodenum rgb(255,253,229)
208 small bowel rgb(205,167,142)
209 colon rgb(204,168,143)
210 anus rgb(255,224,199)
211 liver rgb(221,130,101)
212 biliary tree rgb(0,145,30)
213 gallbladder rgb(139,150,98)
214 pancreas rgb(249,180,111)
215 spleen rgb(157,108,162)
216 urinary system rgb(203,136,116)
217 right kidney rgb(185,102,83)
218 left kidney rgb(185,102,83)
219 right ureter rgb(247,182,164)
220 left ureter rgb(247,182,164)
221 urinary bladder rgb(222,154,132)
222 urethra rgb(124,186,223)
223 right adrenal gland rgb(249,186,150)
224 left adrenal gland rgb(249,186,150)
225 female internal genitalia rgb(244,170,147)
226 uterus rgb(255,181,158)
227 right fallopian tube rgb(255,190,165)
228 left fallopian tube rgb(227,153,130)
229 right ovary rgb(213,141,113)
230 left ovary rgb(213,141,113)
231 vagina rgb(193,123,103)
232 male internal genitalia rgb(216,146,127)
233 prostate rgb(230,158,140)
234 right seminal vesicle rgb(245,172,147)
235 left seminal vesicle rgb(245,172,147)
236 right deferent duct rgb(241,172,151)
237 left deferent duct rgb(241,172,151)
238 skin of abdominal wall rgb(177,124,92)
239 muscles of abdominal wall rgb(171,85,68)
240 skeleton of abdomen rgb(217,198,131)
241 lumbar vertebral column rgb(212,188,102)
242 female external genitalia rgb(185,135,134)
243 male external genitalia rgb(185,135,134)
244 skeleton of upper limb rgb(198,175,125)
245 muscles of upper limb rgb(194,98,79)
246 right upper limb rgb(177,122,101)
247 left upper limb rgb(177,122,101)
248 right shoulder rgb(177,122,101)
249 left shoulder rgb(177,122,101)
250 right arm rgb(177,122,101)
251 left arm rgb(177,122,101)
252 right elbow rgb(177,122,101)
253 left elbow rgb(177,122,101)
254 right forearm rgb(177,122,101)
255 left forearm rgb(177,122,101)
256 right wrist rgb(177,122,101)
257 left wrist rgb(177,122,101)
258 right hand rgb(177,122,101)
259 left hand rgb(177,122,101)
260 skeleton of lower limb rgb(255,238,170)
261 muscles of lower limb rgb(206,111,93)
262 right lower limb rgb(177,122,101)
263 left lower limb rgb(177,122,101)
264 right hip rgb(177,122,101)
265 left hip rgb(177,122,101)
266 right thigh rgb(177,122,101)
267 left thigh rgb(177,122,101)
268 right knee rgb(177,122,101)
269 left knee rgb(177,122,101)
270 right leg rgb(177,122,101)
271 left leg rgb(177,122,101)
272 right foot rgb(177,122,101)
273 left foot rgb(177,122,101)
274 peripheral nervous system rgb(216,186,0)
275 autonomic nerve rgb(255,226,77)
276 sympathetic trunk rgb(255,243,106)
277 cranial nerves rgb(255,234,92)
278 vagus nerve rgb(240,210,35)
279 peripheral nerve rgb(224,194,0)
280 circulatory system rgb(213,99,79)
281 systemic arterial system rgb(217,102,81)
282 systemic venous system rgb(0,147,202)
283 pulmonary arterial system rgb(0,122,171)
284 pulmonary venous system rgb(186,77,64)
285 lymphatic system rgb(111,197,131)
286 foreign object rgb(220,245,20)
287 needle rgb(240,255,30)
288 region 0 rgb(185,232,61)
289 region 1 rgb(0,226,255)
290 region 2 rgb(251,159,255)
291 region 3 rgb(230,169,29)
292 region 4 rgb(0,194,113)
293 region 5 rgb(104,160,249)
294 region 6 rgb(221,108,158)
295 region 7 rgb(137,142,0)
296 region 8 rgb(230,70,0)
297 region 9 rgb(0,147,0)
298 region 10 rgb(0,147,248)
299 region 11 rgb(231,0,206)
300 region 12 rgb(129,78,0)
301 region 13 rgb(0,116,0)
302 region 14 rgb(0,0,255)
303 region 15 rgb(157,0,0)