Difference between revisions of "Modules:SPECTRE-Documentation-3.6"

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** '''Image Modality'''
 
** '''Image Modality'''
 
** '''Output in Original Image Space'''
 
** '''Output in Original Image Space'''
 +
** '''Find Midsaggital Plane'''
 
* '''Advanced panel:'''
 
* '''Advanced panel:'''
** '''First parameter'''
+
** '''Run Smooth Brain Mask'''
** '''Second parameter'''
+
** '''Resample Data to Isotropic Voxels'''
 +
** '''Initial Probability Threshold'''
 +
** '''Minimum Probability threshold'''
 +
** '''MMC Dilation Distance'''
 +
** '''MMC Erosion Distance'''
 
* '''MSP panel:'''
 
* '''MSP panel:'''
 
** '''First parameter'''
 
** '''First parameter'''

Revision as of 19:41, 4 April 2011

Home < Modules:SPECTRE-Documentation-3.6

Return to Slicer 3.6 Documentation

UNDER CONSTRUCTION - extension file is not checked in to Slicer 3.6 branch nor trunk yet.


SPECTRE

SPECTRE

User Interface
Output
Caption

General Information

Module Type & Category

Type: Extension

Category: Segmentation

Authors, Collaborators & Contact

  • Nicole Aucoin, BWH
  • Min Chen, JHU
  • Aaron Carass, JHU
  • Contact: Nicole Aucoin nicole@bwh.harvard.edu, Min Chen mchen55@jhu.edu

Module Description

Overview of what the module does goes here.

Usage

Use Cases, Examples

This module is especially appropriate for these use cases:

  • Use Case 1:
  • Use Case 2:

Examples of the module in use:

  • Example 1
  • Example 2

Tutorials

Links to tutorials explaining how to use this module:

  • Tutorial 1
    • Data Set 1

Quick Tour of Features and Use

A list panels in the interface, their features, what they mean, and how to use them. For instance:

  • Main Panel:
    • Input volume
    • Atlas List
    • Initial Erosion distance
    • Image Modality
    • Output in Original Image Space
    • Find Midsaggital Plane
  • Advanced panel:
    • Run Smooth Brain Mask
    • Resample Data to Isotropic Voxels
    • Initial Probability Threshold
    • Minimum Probability threshold
    • MMC Dilation Distance
    • MMC Erosion Distance
  • MSP panel:
    • First parameter
    • Second parameter
  • Optimized Automated Registration panel:
    • First parameter
    • Second parameter
  • Output panel:
    • First output
    • Second output
  • Viewing panel:
User Interface

Development

Notes from the Developer(s)

Algorithms used, library classes depended upon, use cases, etc.

Dependencies

Other modules or packages that are required for this module's use.

Tests

On the Dashboard, these tests verify that the module is working on various platforms:

Known bugs

Links to known bugs in the Slicer3 bug tracker


Usability issues

Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing.

Source code & documentation

Links to the module's source code:

Source code:

Doxygen documentation:

More Information

Acknowledgment

Include funding and other support here.

References

Publications related to this module go here. Links to pdfs would be useful.