Difference between revisions of "Modules:RealignVolume-Documentation-3.4"
From Slicer Wiki
(New page: Return to Slicer 3.4 Documentation __NOTOC__ ===Realign Volume=== Realign Volume {| |thumb|280px|GUI |} == General Information == =...) |
|||
| Line 1: | Line 1: | ||
[[Documentation-3.4|Return to Slicer 3.4 Documentation]] | [[Documentation-3.4|Return to Slicer 3.4 Documentation]] | ||
__NOTOC__ | __NOTOC__ | ||
| − | === | + | ===ACPC Transform=== |
| − | + | ACPC Transform | |
{| | {| | ||
| − | |[[Image: | + | |[[Image:SlicerACPCTransformGUI-3.4.jpg|thumb|280px|GUI]] |
|} | |} | ||
| Line 21: | Line 21: | ||
===Module Description=== | ===Module Description=== | ||
| − | + | Calculate a transformation from two input fiducial lists. This transformation can then be applied to a volume using the Resample Scalar/Vector/DWI Volume module. | |
== Usage == | == Usage == | ||
| Line 30: | Line 30: | ||
===Quick Tour of Features and Use=== | ===Quick Tour of Features and Use=== | ||
| − | |||
| − | * '''Transform panel:''' Calculate a transform from midline and ACPC fiducial lists, | + | * '''Transform panel:''' Calculate a transform from midline and ACPC fiducial lists, and specify an output transform. |
**ACPC Line: pick a fiducial list from the scene that defines the ACPC line. | **ACPC Line: pick a fiducial list from the scene that defines the ACPC line. | ||
**Midline: pick a fiducial list from the scene that defines the midline. | **Midline: pick a fiducial list from the scene that defines the midline. | ||
| − | **Output transform: An output transform - load | + | **Output transform: An output transform - load the calculated transform in this node. |
| − | * ''' | + | * '''Debug panel:''' Set debugging flag |
| − | + | ** Debug: click to see print outs | |
| − | ** | ||
| − | |||
| − | |||
| − | |||
== Development == | == Development == | ||
| Line 47: | Line 42: | ||
===Dependencies=== | ===Dependencies=== | ||
| − | The fiducials | + | The fiducials module is required for this module's use. The Resample Scalar/Vector/DWI Volume module can be used to apply the transform once it has been calcualted. |
===Known bugs=== | ===Known bugs=== | ||
Revision as of 00:21, 14 April 2009
Home < Modules:RealignVolume-Documentation-3.4Return to Slicer 3.4 Documentation
ACPC Transform
ACPC Transform
General Information
Module Type & Category
Type: CLI
Category: Registration
Authors, Collaborators & Contact
- Nicole Aucoin: Brigham and Women's Hospital
- Contact: Nicole Aucoin, nicole@bwh.harvard.edu
Module Description
Calculate a transformation from two input fiducial lists. This transformation can then be applied to a volume using the Resample Scalar/Vector/DWI Volume module.
Usage
Examples, Use Cases & Tutorials
- Useful when can place fiducials in two orthogonal lines in a an image to define the midline and the ACPC line
Quick Tour of Features and Use
- Transform panel: Calculate a transform from midline and ACPC fiducial lists, and specify an output transform.
- ACPC Line: pick a fiducial list from the scene that defines the ACPC line.
- Midline: pick a fiducial list from the scene that defines the midline.
- Output transform: An output transform - load the calculated transform in this node.
- Debug panel: Set debugging flag
- Debug: click to see print outs
Development
Dependencies
The fiducials module is required for this module's use. The Resample Scalar/Vector/DWI Volume module can be used to apply the transform once it has been calcualted.
Known bugs
Follow this link to the Slicer3 bug tracker.
Usability issues
Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing.
Source code & documentation
Source Code:
Doxygen documentation:
- []
More Information
Acknowledgment
This work is part of the National Alliance for Medical Image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.
