Difference between revisions of "Modules:GyriContourSegmentation-Documentation-3.5"

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Publications related to this module go here. Links to pdfs would be useful.
 
Publications related to this module go here. Links to pdfs would be useful.
  
  P.A. Karasev, J.G. Malcolm, M. Niethammer, R. Kikinis, A. Tannenbaum.  
+
  P.A. Karasev, J.G. Malcolm, M. Niethammer, R. Kikinis, A. Tannenbaum. User-Driven 3D Mesh Region Targeting. To appear in SPIE Medical Imaging 2010.  
User-Driven 3D Mesh Region Targeting. To appear in SPIE Medical Imaging 2010.  
 
 
[[File:pkmesh-spie.pdf]]
 
[[File:pkmesh-spie.pdf]]

Revision as of 23:48, 4 December 2009

Home < Modules:GyriContourSegmentation-Documentation-3.5

Return to Slicer 3.5 Documentation

Gyri Contour Segmentation

MyModule

Surface Normal Curvature
Initial Points From User
Converged Contour on Surface

General Information

Module Type & Category

Type: CLI

Category: Segmentation

Authors, Collaborators & Contact

  • Peter Karasev (Author): Georgia Tech
  • Allen Tannenbaum (Collaborator): Georgia Tech
  • Ron Kikinis (Collaborator): Harvard Medical School SPL
  • Jimi Macolm (Collaborator): Harvard Medical School SPL / Georgia Tech
  • Contact: Peter Karasev, pkarasev@gatech.edu

Module Description

This module is a tool to generate closed contours on a surface in 3D. The contour is initialized with a set of points, and subsequently 'evolves' according to some geometric criterion of the underlying surface (e.g. Surface Normal, mean curvature, second fundamental form, etc) and the embedded curve (e.g. geodesic & normal curvatures, etc ).

The implementation uses a version of Sparse Field Level Sets (Whitaker et al 1998) modified for a mesh where there is an arbitrary number of vertex neighbors.

While the motivating problem is segmentation of Sulci & Gyri on the cortical surface, the technique is also applicable to analysis of other anatomic structures (e.g. bones and fractures thereof).

Usage

Examples, Use Cases & Tutorials

  • Note use cases for which this module is especially appropriate, and/or link to examples.
  • Link to examples of the module's use
  • Link to any existing tutorials

Quick Tour of Features and Use

List all the panels in your interface, their features, what they mean, and how to use them. For instance:

  • Input panel:
  • Parameters panel:
  • Output panel:
  • Viewing panel:

Development

Dependencies

Other modules or packages that are required for this module's use.

Known bugs

Follow this link to the Slicer3 bug tracker.


Usability issues

Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing.

Source code & documentation

Customize following links for your module.

Links to documentation generated by doxygen.


More Information

Acknowledgment

Include funding and other support here.

References

Publications related to this module go here. Links to pdfs would be useful.

P.A. Karasev, J.G. Malcolm, M. Niethammer, R. Kikinis, A. Tannenbaum. User-Driven 3D Mesh Region Targeting. To appear in SPIE Medical Imaging 2010. 

Pkmesh-spie.pdf