Difference between revisions of "Modules:BRAINSDemonWarp"

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===Module Type & Category===
 
===Module Type & Category===
  
Type: Interactive or CLI
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Type: Interactive  
  
Category: Base or (Filtering, Registration, ''etc.'')
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Category: Registration
  
 
===Authors, Collaborators & Contact===
 
===Authors, Collaborators & Contact===
* Author1: Affiliation & logo, if desired
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* Author: Tom Vercauteren : Institut National de Recherche En Informatique Et En Automatique
* Contributor1: Affiliation & logo, if desired
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* Contributor: Hans J. Johnson : University of Iowa
* Contributor2: Affiliation & logo, if desired
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* Contributor2: Kent WIlliams : University of Iowa
* Contact: name, email
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* Contact: Hans J. Johnson hans-johnson@uiowa.edu
  
 
===Module Description===
 
===Module Description===
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== Usage ==
 
== Usage ==
 
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BrainDemonsWarp is a command line program for image registration by using different methods including Thirion and diffeomorphic demons algorithms. The function takes in a template image and a target image along with other optional parameters and registers the template image onto the target image. The resultant deformation fields and metric values can be written to a file. The program uses the Insight Toolkit (www.ITK.org) for all the computations, and can operate on any of the image types supported by that library.
 
===Use Cases, Examples===
 
===Use Cases, Examples===
  

Revision as of 16:54, 5 May 2010

Home < Modules:BRAINSDemonWarp

Return to Slicer 3.6 Documentation

Gallery of New Features


Module Name

MyModule

User Interface
Output
Caption

General Information

Module Type & Category

Type: Interactive

Category: Registration

Authors, Collaborators & Contact

  • Author: Tom Vercauteren : Institut National de Recherche En Informatique Et En Automatique
  • Contributor: Hans J. Johnson : University of Iowa
  • Contributor2: Kent WIlliams : University of Iowa
  • Contact: Hans J. Johnson hans-johnson@uiowa.edu

Module Description

Overview of what the module does goes here.

Usage

BrainDemonsWarp is a command line program for image registration by using different methods including Thirion and diffeomorphic demons algorithms. The function takes in a template image and a target image along with other optional parameters and registers the template image onto the target image. The resultant deformation fields and metric values can be written to a file. The program uses the Insight Toolkit (www.ITK.org) for all the computations, and can operate on any of the image types supported by that library.

Use Cases, Examples

This module is especially appropriate for these use cases:

  • Use Case 1:
  • Use Case 2:

Examples of the module in use:

  • Example 1
  • Example 2

Tutorials

Links to tutorials explaining how to use this module:

  • Tutorial 1
    • Data Set 1

Quick Tour of Features and Use

A list panels in the interface, their features, what they mean, and how to use them. For instance:

  • Input panel:
    • First input
    • Second input
  • Parameters panel:
    • First parameter
    • Second parameter
  • Output panel:
    • First output
    • Second output
  • Viewing panel:
User Interface

Development

Notes from the Developer(s)

Algorithms used, library classes depended upon, use cases, etc.

Dependencies

Other modules or packages that are required for this module's use.

Tests

On the Dashboard, these tests verify that the module is working on various platforms:

Known bugs

Links to known bugs in the Slicer3 bug tracker


Usability issues

Follow this link to the Slicer3 bug tracker. Please select the usability issue category when browsing or contributing.

Source code & documentation

Links to the module's source code:

Source code:

Doxygen documentation:

More Information

Acknowledgment

Include funding and other support here.

References

Publications related to this module go here. Links to pdfs would be useful.