Difference between revisions of "EMSegmenter-Tasks:Non-Human-Primate"

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==Description==
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Non Human Primate pipeline ...'''TODO'''
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==Anatomical Tree==
 
==Anatomical Tree==
  

Revision as of 17:09, 30 November 2010

Home < EMSegmenter-Tasks:Non-Human-Primate

Description

Non Human Primate pipeline ...TODO

Anatomical Tree

  • Root
    • Head
      • intracranial cavity (ICC)
        • TODO (WGC)
          • grey matter (GM)
            • TODO (lSGM)
              • left caudate (lCaudate)
              • left putamen (lPutamen)
              • left hippocampus (lHippocampus)
            • TODO (rSGM)
              • right caudate (rCaudate)
              • right putamen (rPutamen)
              • right hippocampus (rHippocampus)
            • TODO (CGM)
          • white matter (WM)
          • cerebrospinal fluid (CSF)
        • Brainstem
        • Cerebellum
      • background (BG)

Atlas

Image Dimension = 256 x 256 x 252
Image Spacing = 0.4688 x 0.4688 x 0.50002


Pre-Processing

  • 1 step: image inhomogeneity correction N4ITKBiasFieldCorrection
  • 2 step: atlas-to-target registration BRAINSFit
  • 3 step: automatic mean/covariance calculation. (TODO Kilian)

Result

NHP.png


Collaborators

Andriy Fedorov (BWH)

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